© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6484 |
| Gene name | |
| Location | Contig_3337:50..755 |
| Strand | - |
| Gene length (bp) | 705 |
| Transcript length (bp) | 534 |
| Coding sequence length (bp) | 534 |
| Protein length (aa) | 178 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00230 | MIP | Major intrinsic protein | 7.1E-11 | 39 | 143 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P29975|AQP1_RAT | Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=1 SV=4 | 31 | 177 | 7.0E-07 |
| sp|Q02013|AQP1_MOUSE | Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3 | 31 | 139 | 4.0E-06 |
| sp|P25794|PIP2_PEA | Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 | 19 | 145 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0015267 | channel activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 38 | 60 | 22 |
| 2 | 73 | 95 | 22 |
| 3 | 118 | 140 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6484 MNESTAEAVSAASISSWPPSMAPSFQTPDRASLVPFRGVWRAAFVEAVAMTCFIFATGQITATLSSYDTKQQGAY SGIGTCVISSLSIYAIGAATGGQINPMITFSAVLAGLCPVSRGVLYMCGQTIGAALASGILTGVWGRERLIRYPS TSFLEFRNTSLILQGFMEVAASSTRRR* |
| Coding | >Hirsu2|6484 ATGAACGAAAGCACTGCCGAGGCGGTGTCCGCGGCAAGCATCTCCAGCTGGCCTCCTTCGATGGCTCCTTCGTTC CAGACGCCAGACCGGGCCTCGCTCGTGCCGTTCCGTGGCGTTTGGCGGGCAGCCTTTGTCGAGGCCGTGGCCATG ACCTGTTTCATCTTCGCCACTGGACAGATAACTGCCACGCTGAGCAGCTATGATACTAAGCAGCAGGGGGCCTAT AGCGGCATAGGCACATGTGTTATATCTTCCTTGTCTATCTACGCCATAGGTGCAGCCACGGGCGGCCAAATCAAC CCCATGATTACCTTCTCCGCCGTCCTCGCGGGACTCTGCCCGGTCTCAAGAGGCGTGCTATACATGTGCGGCCAG ACAATCGGTGCTGCACTGGCCAGTGGGATTTTAACTGGCGTCTGGGGTCGCGAGCGATTAATCAGGTATCCCAGC ACCAGCTTCCTAGAGTTTCGGAATACATCGCTAATTCTTCAAGGATTCATGGAGGTGGCTGCTTCTTCGACTCGT CGCAGATGA |
| Transcript | >Hirsu2|6484 ATGAACGAAAGCACTGCCGAGGCGGTGTCCGCGGCAAGCATCTCCAGCTGGCCTCCTTCGATGGCTCCTTCGTTC CAGACGCCAGACCGGGCCTCGCTCGTGCCGTTCCGTGGCGTTTGGCGGGCAGCCTTTGTCGAGGCCGTGGCCATG ACCTGTTTCATCTTCGCCACTGGACAGATAACTGCCACGCTGAGCAGCTATGATACTAAGCAGCAGGGGGCCTAT AGCGGCATAGGCACATGTGTTATATCTTCCTTGTCTATCTACGCCATAGGTGCAGCCACGGGCGGCCAAATCAAC CCCATGATTACCTTCTCCGCCGTCCTCGCGGGACTCTGCCCGGTCTCAAGAGGCGTGCTATACATGTGCGGCCAG ACAATCGGTGCTGCACTGGCCAGTGGGATTTTAACTGGCGTCTGGGGTCGCGAGCGATTAATCAGGTATCCCAGC ACCAGCTTCCTAGAGTTTCGGAATACATCGCTAATTCTTCAAGGATTCATGGAGGTGGCTGCTTCTTCGACTCGT CGCAGATGA |
| Gene | >Hirsu2|6484 ATGAACGAAAGCACTGCCGAGGCGGTGTCCGCGGCAAGCATCTCCAGCTGGCCTCCTTCGATGGCTCCTTCGTTC CAGACGCCAGACCGGGCCTCGCTCGTGCCGTTCCGTGGTACAGAGACCGCGACTATCTCCTGAGCGGCTGGCTGA GACCAGGCGTTTGGCGGGCAGCCGTAGGTGTCGCGATCCTGCCATGCGTATTCTCGAAGTCCTTGCTTACACGTG GCGCGAATCGCGAAACATAGTTTGTCGAGGCCGTGGCCATGACCTGTTTCATCTTCGCCACTGGACAGATAACTG CCACGCTGAGCAGCTATGATACTAAGCAGCAGGGGGCCTATAGCGGCATAGGCACATGTGTTATATCTTCCTTGT CTATCTACGCCATAGGTGCAGCCACGGGCGGCCAAATCAACCCCATGATTACCTTCTCCGCCGTCCTCGCGGGAC TCTGCCCGGTCTCAAGAGGTCTGTTCGCGATTTTGTGTCCTCCATTAGCCGGCGACGGCTGACCACGGTCAAGGC GTGCTATACATGTGCGGCCAGACAATCGGTGCTGCACTGGCCAGTGGGATTTTAACTGGCGTCTGGGGTCGCGAG CGATTAATCAGGTATCCCAGCACCAGCTTCCTAGAGTTTCGGAATACATCGCTAATTCTTCAAGGATTCATGGAG GTGGCTGCTTCTTCGACTCGTCGCAGATGA |