© 2020 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6481 |
| Gene name | |
| Location | Contig_3331:256..976 |
| Strand | - |
| Gene length (bp) | 720 |
| Transcript length (bp) | 720 |
| Coding sequence length (bp) | 720 |
| Protein length (aa) | 240 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 7.6E-07 | 6 | 182 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36035|JEN1_YEAST | Carboxylic acid transporter protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JEN1 PE=1 SV=1 | 1 | 239 | 2.0E-40 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0044425 | membrane part | No |
| GO:0005575 | cellular_component | No |
| GO:0005215 | transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 59 | 78 | 19 |
| 3 | 161 | 183 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6481 MAGFNFMSHGSQDLYPTMLESQLGFGPTRVTLTQVVSNLGAMLGGTLVGFGSQSVGRRLSILVCCVAGGALLYPY TFVGSDAVMAAAFFQQFCVQGAWGVVPVHLMELSPGAFRTFVVGTSYQLGNLASSASSTIEARLGEQFPLPAPPG GEAAAGERFEYGKVICIFMACVYAYVIALTLLGPEHLHRKLGVAHDADARAAVGSDAVDQAAARPELRGLDLDDA DEEKKMTSAKTVEG* |
| Coding | >Hirsu2|6481 ATGGCCGGCTTCAACTTCATGAGCCACGGCAGCCAGGACCTGTACCCGACCATGCTGGAGAGCCAGCTGGGCTTC GGCCCGACGCGCGTGACGCTGACGCAGGTCGTCTCCAACCTGGGCGCCATGCTGGGCGGCACCCTCGTCGGCTTC GGCAGCCAGTCGGTCGGGCGCCGGCTCAGCATCCTGGTCTGCTGCGTCGCCGGCGGCGCCCTGCTGTACCCCTAC ACCTTCGTCGGCTCCGACGCCGTCATGGCCGCCGCCTTCTTCCAGCAGTTCTGCGTCCAGGGCGCCTGGGGCGTC GTGCCCGTCCACCTGATGGAGCTGTCGCCGGGCGCCTTCCGCACCTTCGTCGTCGGCACCTCGTACCAGCTCGGC AACCTGGCCTCGTCCGCCTCGTCCACCATCGAGGCCCGCCTCGGCGAGCAGTTCCCGCTGCCGGCCCCGCCCGGC GGGGAGGCCGCCGCCGGCGAGCGCTTCGAGTACGGCAAGGTCATCTGCATCTTCATGGCCTGCGTCTACGCCTAC GTCATCGCCCTGACCCTCCTCGGGCCCGAGCACCTGCACCGCAAGCTCGGCGTCGCCCACGACGCCGACGCCCGC GCCGCCGTCGGCTCCGACGCCGTCGACCAAGCCGCCGCCCGCCCCGAGCTGCGCGGCCTGGACCTCGACGACGCC GACGAGGAGAAGAAGATGACGTCGGCCAAGACGGTCGAGGGATGA |
| Transcript | >Hirsu2|6481 ATGGCCGGCTTCAACTTCATGAGCCACGGCAGCCAGGACCTGTACCCGACCATGCTGGAGAGCCAGCTGGGCTTC GGCCCGACGCGCGTGACGCTGACGCAGGTCGTCTCCAACCTGGGCGCCATGCTGGGCGGCACCCTCGTCGGCTTC GGCAGCCAGTCGGTCGGGCGCCGGCTCAGCATCCTGGTCTGCTGCGTCGCCGGCGGCGCCCTGCTGTACCCCTAC ACCTTCGTCGGCTCCGACGCCGTCATGGCCGCCGCCTTCTTCCAGCAGTTCTGCGTCCAGGGCGCCTGGGGCGTC GTGCCCGTCCACCTGATGGAGCTGTCGCCGGGCGCCTTCCGCACCTTCGTCGTCGGCACCTCGTACCAGCTCGGC AACCTGGCCTCGTCCGCCTCGTCCACCATCGAGGCCCGCCTCGGCGAGCAGTTCCCGCTGCCGGCCCCGCCCGGC GGGGAGGCCGCCGCCGGCGAGCGCTTCGAGTACGGCAAGGTCATCTGCATCTTCATGGCCTGCGTCTACGCCTAC GTCATCGCCCTGACCCTCCTCGGGCCCGAGCACCTGCACCGCAAGCTCGGCGTCGCCCACGACGCCGACGCCCGC GCCGCCGTCGGCTCCGACGCCGTCGACCAAGCCGCCGCCCGCCCCGAGCTGCGCGGCCTGGACCTCGACGACGCC GACGAGGAGAAGAAGATGACGTCGGCCAAGACGGTCGAGGGATGA |
| Gene | >Hirsu2|6481 ATGGCCGGCTTCAACTTCATGAGCCACGGCAGCCAGGACCTGTACCCGACCATGCTGGAGAGCCAGCTGGGCTTC GGCCCGACGCGCGTGACGCTGACGCAGGTCGTCTCCAACCTGGGCGCCATGCTGGGCGGCACCCTCGTCGGCTTC GGCAGCCAGTCGGTCGGGCGCCGGCTCAGCATCCTGGTCTGCTGCGTCGCCGGCGGCGCCCTGCTGTACCCCTAC ACCTTCGTCGGCTCCGACGCCGTCATGGCCGCCGCCTTCTTCCAGCAGTTCTGCGTCCAGGGCGCCTGGGGCGTC GTGCCCGTCCACCTGATGGAGCTGTCGCCGGGCGCCTTCCGCACCTTCGTCGTCGGCACCTCGTACCAGCTCGGC AACCTGGCCTCGTCCGCCTCGTCCACCATCGAGGCCCGCCTCGGCGAGCAGTTCCCGCTGCCGGCCCCGCCCGGC GGGGAGGCCGCCGCCGGCGAGCGCTTCGAGTACGGCAAGGTCATCTGCATCTTCATGGCCTGCGTCTACGCCTAC GTCATCGCCCTGACCCTCCTCGGGCCCGAGCACCTGCACCGCAAGCTCGGCGTCGCCCACGACGCCGACGCCCGC GCCGCCGTCGGCTCCGACGCCGTCGACCAAGCCGCCGCCCGCCCCGAGCTGCGCGGCCTGGACCTCGACGACGCC GACGAGGAGAAGAAGATGACGTCGGCCAAGACGGTCGAGGGATGA |