© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6478 |
| Gene name | |
| Location | Contig_333:18996..19608 |
| Strand | + |
| Gene length (bp) | 612 |
| Transcript length (bp) | 369 |
| Coding sequence length (bp) | 369 |
| Protein length (aa) | 123 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0972 | 0.0443 | 0.9562 | 0.0657 | 0.0769 | 0.0128 | 0.115 | 0.1846 | 0.0739 | 0.0024 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.999342 |
| Orthofinder run ID | 4 |
| Orthogroup | 7563 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3299 |
| Ophiocordyceps subramaniannii | Hirsu2|6478 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6478 MKPQALLSLAALCVVASGRLIPKAQNQCSDRGSKAEEWCKRHYTELPDKPPEQPQDEPPEQPVTKDKHVACQNKA FNEECLKGLGRELKDTGNKWCDAVKPSAGIPKCYELVEKLLSLHKGC* |
| Coding | >Hirsu2|6478 ATGAAGCCACAAGCTCTCCTCTCTCTCGCGGCCTTGTGCGTCGTTGCCAGCGGCCGCCTGATCCCCAAGGCCCAG AACCAGTGTTCCGACAGAGGCAGCAAGGCCGAAGAATGGTGTAAAAGGCACTACACTGAGCTACCTGATAAGCCA CCCGAGCAGCCTCAGGACGAGCCACCCGAGCAGCCGGTGACTAAAGACAAACACGTGGCGTGTCAAAACAAGGCC TTCAATGAAGAGTGCCTCAAAGGCTTGGGCCGAGAGCTGAAGGATACTGGCAACAAGTGGTGCGACGCCGTTAAG CCATCAGCGGGTATACCAAAGTGTTACGAACTTGTCGAAAAACTCCTTTCTCTTCATAAAGGGTGCTAG |
| Transcript | >Hirsu2|6478 ATGAAGCCACAAGCTCTCCTCTCTCTCGCGGCCTTGTGCGTCGTTGCCAGCGGCCGCCTGATCCCCAAGGCCCAG AACCAGTGTTCCGACAGAGGCAGCAAGGCCGAAGAATGGTGTAAAAGGCACTACACTGAGCTACCTGATAAGCCA CCCGAGCAGCCTCAGGACGAGCCACCCGAGCAGCCGGTGACTAAAGACAAACACGTGGCGTGTCAAAACAAGGCC TTCAATGAAGAGTGCCTCAAAGGCTTGGGCCGAGAGCTGAAGGATACTGGCAACAAGTGGTGCGACGCCGTTAAG CCATCAGCGGGTATACCAAAGTGTTACGAACTTGTCGAAAAACTCCTTTCTCTTCATAAAGGGTGCTAG |
| Gene | >Hirsu2|6478 ATGAAGCCACAAGCTCTCCTCTCTCTCGCGGCCTTGTGCGTCGTTGCCAGCGGCCGCCTGATCCCCAAGGCCCAG AACCAGTCAGTGGAGTGGCCGGAGTGGATAGGCTTTCCAAGTTGGTGTTCTGGACCGGGCCGAAAAGAATACAAA AAGTGCACAAAAGCAAAAGGGGTACAGTCGGGCGAAGGCAGGGACTGTTTCAAACAGATCTTTTCGGACCTTTGT GCCGGCAAGGGGCCTGGCTACTCTCAAGAAACGTGCATAAACGTGAGTGGCGAGGCCTACTATTGGTGTTTGCAT GTCTATGGACAAACAGACAAAAGGTGTTCCGACAGAGGCAGCAAGGCCGAAGAATGGTGTAAAAGGCACTACACT GAGCTACCTGATAAGCCACCCGAGCAGCCTCAGGACGAGCCACCCGAGCAGCCGGTGACTAAAGACAAACACGTG GCGTGTCAAAACAAGGCCTTCAATGAAGAGTGCCTCAAAGGCTTGGGCCGAGAGCTGAAGGATACTGGCAACAAG TGGTGCGACGCCGTTAAGCCATCAGCGGGTATACCAAAGTGTTACGAACTTGTCGAAAAACTCCTTTCTCTTCAT AAAGGGTGCTAG |