© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6394 |
| Gene name | |
| Location | Contig_3277:791..1091 |
| Strand | + |
| Gene length (bp) | 300 |
| Transcript length (bp) | 300 |
| Coding sequence length (bp) | 300 |
| Protein length (aa) | 100 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09801 | SYS1 | Integral membrane protein S linking to the trans Golgi network | 1.8E-17 | 12 | 89 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P41544|SYS1_YEAST | Protein SYS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYS1 PE=1 SV=1 | 1 | 98 | 8.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 49 | 19 |
| 2 | 69 | 91 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6394 MPRRRRPPRAGALSELQPVKIAGQMAALQALFYAAALVLMLFTALVAGMPFRLDLVLGWEGVRGDTTRGWLLAFV WLLDGGLCMCVPLLIAPCGPGRLN* |
| Coding | >Hirsu2|6394 ATGCCGCGACGACGCCGGCCGCCGCGCGCGGGCGCCCTGTCGGAGCTGCAGCCGGTCAAGATCGCGGGCCAGATG GCGGCGCTGCAGGCGCTCTTCTACGCGGCCGCGCTCGTCCTCATGCTCTTCACCGCGCTCGTCGCCGGCATGCCC TTCCGTCTTGACCTGGTGCTCGGCTGGGAGGGCGTGCGGGGCGACACGACGCGCGGCTGGCTGCTGGCCTTTGTC TGGCTGCTCGACGGCGGCCTCTGCATGTGCGTTCCTCTCCTCATCGCTCCGTGCGGACCTGGTCGTCTGAATTGA |
| Transcript | >Hirsu2|6394 ATGCCGCGACGACGCCGGCCGCCGCGCGCGGGCGCCCTGTCGGAGCTGCAGCCGGTCAAGATCGCGGGCCAGATG GCGGCGCTGCAGGCGCTCTTCTACGCGGCCGCGCTCGTCCTCATGCTCTTCACCGCGCTCGTCGCCGGCATGCCC TTCCGTCTTGACCTGGTGCTCGGCTGGGAGGGCGTGCGGGGCGACACGACGCGCGGCTGGCTGCTGGCCTTTGTC TGGCTGCTCGACGGCGGCCTCTGCATGTGCGTTCCTCTCCTCATCGCTCCGTGCGGACCTGGTCGTCTGAATTGA |
| Gene | >Hirsu2|6394 ATGCCGCGACGACGCCGGCCGCCGCGCGCGGGCGCCCTGTCGGAGCTGCAGCCGGTCAAGATCGCGGGCCAGATG GCGGCGCTGCAGGCGCTCTTCTACGCGGCCGCGCTCGTCCTCATGCTCTTCACCGCGCTCGTCGCCGGCATGCCC TTCCGTCTTGACCTGGTGCTCGGCTGGGAGGGCGTGCGGGGCGACACGACGCGCGGCTGGCTGCTGGCCTTTGTC TGGCTGCTCGACGGCGGCCTCTGCATGTGCGTTCCTCTCCTCATCGCTCCGTGCGGACCTGGTCGTCTGAATTGA |