Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6384
Gene name
LocationContig_327:10340..10848
Strand+
Gene length (bp)508
Transcript length (bp)423
Coding sequence length (bp)423
Protein length (aa) 141

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0964 0.0587 0.9778 0.0978 0.0786 0.0176 0.1954 0.0617 0.2067 0.0032

SignalP

SignalP signal predicted Location Score
Yes 1 - 27 0.999618

Transmembrane Domains

Domain # Start End Length
1 5 27 22
2 40 62 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7085
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|845
Ophiocordyceps australis map64 (Brazil) OphauB2|8130
Ophiocordyceps subramaniannii Hirsu2|6384 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6384
MHVTLAASTAMSLVCVLMLGSLQGAVAQPVSKAGLEARAGGGLFGGGGLFGGGGGGLFGGGGGGGGLGQILSDHR
QFIQDPASSEDPIPADENNPAREAHRSVHAALFEATGGGLFGGNKSKGGGRGKASNNDNNDDDDN*
Coding >Hirsu2|6384
ATGCATGTCACTCTCGCTGCGTCCACTGCCATGTCCTTGGTCTGCGTCTTGATGCTCGGGTCGCTTCAGGGCGCA
GTGGCACAACCCGTCAGCAAGGCTGGACTGGAGGCCCGCGCGGGAGGTGGCCTCTTTGGAGGAGGAGGCCTCTTT
GGAGGAGGAGGAGGAGGCCTCTTTGGAGGAGGAGGAGGAGGAGGAGGCCTTGGGCAGATCCTCAGCGACCACAGA
CAATTCATCCAGGACCCTGCGAGCTCCGAGGATCCGATCCCCGCGGACGAGAACAACCCGGCTCGTGAAGCCCAT
CGCTCGGTCCATGCCGCGCTTTTCGAAGCCACCGGGGGCGGCCTATTCGGTGGGAATAAGAGCAAGGGAGGTGGT
CGTGGCAAAGCTTCCAACAACGATAATAACGATGACGATGACAACTGA
Transcript >Hirsu2|6384
ATGCATGTCACTCTCGCTGCGTCCACTGCCATGTCCTTGGTCTGCGTCTTGATGCTCGGGTCGCTTCAGGGCGCA
GTGGCACAACCCGTCAGCAAGGCTGGACTGGAGGCCCGCGCGGGAGGTGGCCTCTTTGGAGGAGGAGGCCTCTTT
GGAGGAGGAGGAGGAGGCCTCTTTGGAGGAGGAGGAGGAGGAGGAGGCCTTGGGCAGATCCTCAGCGACCACAGA
CAATTCATCCAGGACCCTGCGAGCTCCGAGGATCCGATCCCCGCGGACGAGAACAACCCGGCTCGTGAAGCCCAT
CGCTCGGTCCATGCCGCGCTTTTCGAAGCCACCGGGGGCGGCCTATTCGGTGGGAATAAGAGCAAGGGAGGTGGT
CGTGGCAAAGCTTCCAACAACGATAATAACGATGACGATGACAACTGA
Gene >Hirsu2|6384
ATGCATGTCACTCTCGCTGCGTCCACTGCCATGTCCTTGGTCTGCGTCTTGATGCTCGGGTCGCTTCAGGGCGCA
GTGGCACAACCCGTCAGCAAGGGTACGTCTTCTCCTCCAAGCAAAGGTCTTTTGATTTGAAGCGTGAGGGTAAGA
AGCAGGGCCGCTTACAAGTTTCCTCTCTACAGCTGGACTGGAGGCCCGCGCGGGAGGTGGCCTCTTTGGAGGAGG
AGGCCTCTTTGGAGGAGGAGGAGGAGGCCTCTTTGGAGGAGGAGGAGGAGGAGGAGGCCTTGGGCAGATCCTCAG
CGACCACAGACAATTCATCCAGGACCCTGCGAGCTCCGAGGATCCGATCCCCGCGGACGAGAACAACCCGGCTCG
TGAAGCCCATCGCTCGGTCCATGCCGCGCTTTTCGAAGCCACCGGGGGCGGCCTATTCGGTGGGAATAAGAGCAA
GGGAGGTGGTCGTGGCAAAGCTTCCAACAACGATAATAACGATGACGATGACAACTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail