© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6384 |
| Gene name | |
| Location | Contig_327:10340..10848 |
| Strand | + |
| Gene length (bp) | 508 |
| Transcript length (bp) | 423 |
| Coding sequence length (bp) | 423 |
| Protein length (aa) | 141 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0964 | 0.0587 | 0.9778 | 0.0978 | 0.0786 | 0.0176 | 0.1954 | 0.0617 | 0.2067 | 0.0032 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 27 | 0.999618 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 40 | 62 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 7085 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps australis 1348a (Ghana) | OphauG2|845 |
| Ophiocordyceps australis map64 (Brazil) | OphauB2|8130 |
| Ophiocordyceps subramaniannii | Hirsu2|6384 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6384 MHVTLAASTAMSLVCVLMLGSLQGAVAQPVSKAGLEARAGGGLFGGGGLFGGGGGGLFGGGGGGGGLGQILSDHR QFIQDPASSEDPIPADENNPAREAHRSVHAALFEATGGGLFGGNKSKGGGRGKASNNDNNDDDDN* |
| Coding | >Hirsu2|6384 ATGCATGTCACTCTCGCTGCGTCCACTGCCATGTCCTTGGTCTGCGTCTTGATGCTCGGGTCGCTTCAGGGCGCA GTGGCACAACCCGTCAGCAAGGCTGGACTGGAGGCCCGCGCGGGAGGTGGCCTCTTTGGAGGAGGAGGCCTCTTT GGAGGAGGAGGAGGAGGCCTCTTTGGAGGAGGAGGAGGAGGAGGAGGCCTTGGGCAGATCCTCAGCGACCACAGA CAATTCATCCAGGACCCTGCGAGCTCCGAGGATCCGATCCCCGCGGACGAGAACAACCCGGCTCGTGAAGCCCAT CGCTCGGTCCATGCCGCGCTTTTCGAAGCCACCGGGGGCGGCCTATTCGGTGGGAATAAGAGCAAGGGAGGTGGT CGTGGCAAAGCTTCCAACAACGATAATAACGATGACGATGACAACTGA |
| Transcript | >Hirsu2|6384 ATGCATGTCACTCTCGCTGCGTCCACTGCCATGTCCTTGGTCTGCGTCTTGATGCTCGGGTCGCTTCAGGGCGCA GTGGCACAACCCGTCAGCAAGGCTGGACTGGAGGCCCGCGCGGGAGGTGGCCTCTTTGGAGGAGGAGGCCTCTTT GGAGGAGGAGGAGGAGGCCTCTTTGGAGGAGGAGGAGGAGGAGGAGGCCTTGGGCAGATCCTCAGCGACCACAGA CAATTCATCCAGGACCCTGCGAGCTCCGAGGATCCGATCCCCGCGGACGAGAACAACCCGGCTCGTGAAGCCCAT CGCTCGGTCCATGCCGCGCTTTTCGAAGCCACCGGGGGCGGCCTATTCGGTGGGAATAAGAGCAAGGGAGGTGGT CGTGGCAAAGCTTCCAACAACGATAATAACGATGACGATGACAACTGA |
| Gene | >Hirsu2|6384 ATGCATGTCACTCTCGCTGCGTCCACTGCCATGTCCTTGGTCTGCGTCTTGATGCTCGGGTCGCTTCAGGGCGCA GTGGCACAACCCGTCAGCAAGGGTACGTCTTCTCCTCCAAGCAAAGGTCTTTTGATTTGAAGCGTGAGGGTAAGA AGCAGGGCCGCTTACAAGTTTCCTCTCTACAGCTGGACTGGAGGCCCGCGCGGGAGGTGGCCTCTTTGGAGGAGG AGGCCTCTTTGGAGGAGGAGGAGGAGGCCTCTTTGGAGGAGGAGGAGGAGGAGGAGGCCTTGGGCAGATCCTCAG CGACCACAGACAATTCATCCAGGACCCTGCGAGCTCCGAGGATCCGATCCCCGCGGACGAGAACAACCCGGCTCG TGAAGCCCATCGCTCGGTCCATGCCGCGCTTTTCGAAGCCACCGGGGGCGGCCTATTCGGTGGGAATAAGAGCAA GGGAGGTGGTCGTGGCAAAGCTTCCAACAACGATAATAACGATGACGATGACAACTGA |