© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6365 |
| Gene name | |
| Location | Contig_325:6612..7473 |
| Strand | - |
| Gene length (bp) | 861 |
| Transcript length (bp) | 714 |
| Coding sequence length (bp) | 714 |
| Protein length (aa) | 238 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00957 | Synaptobrevin | Synaptobrevin | 6.6E-30 | 148 | 231 |
| PF13774 | Longin | Regulated-SNARE-like domain | 2.8E-28 | 38 | 130 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FMR5|VA714_ARATH | Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1 | 11 | 230 | 3.0E-29 |
| sp|O49377|VA711_ARATH | Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=1 SV=2 | 11 | 213 | 4.0E-29 |
| sp|Q86AQ7|VAM7B_DICDI | Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1 | 10 | 219 | 6.0E-29 |
| sp|Q9LFP1|VA713_ARATH | Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1 | 11 | 226 | 2.0E-28 |
| sp|Q9SIQ9|VA712_ARATH | Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1 | 11 | 213 | 3.0E-28 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FMR5|VA714_ARATH | Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1 | 11 | 230 | 3.0E-29 |
| sp|O49377|VA711_ARATH | Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=1 SV=2 | 11 | 213 | 4.0E-29 |
| sp|Q86AQ7|VAM7B_DICDI | Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1 | 10 | 219 | 6.0E-29 |
| sp|Q9LFP1|VA713_ARATH | Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1 | 11 | 226 | 2.0E-28 |
| sp|Q9SIQ9|VA712_ARATH | Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1 | 11 | 213 | 3.0E-28 |
| sp|Q9MAS5|VA726_ARATH | Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2 | 10 | 214 | 6.0E-25 |
| sp|P47192|VA722_ARATH | Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2 | 11 | 214 | 1.0E-24 |
| sp|Q54NW7|VAM7A_DICDI | Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1 | 9 | 233 | 2.0E-24 |
| sp|O48850|VA725_ARATH | Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2 | 11 | 214 | 5.0E-24 |
| sp|Q9ZTW3|VA721_ARATH | Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=1 SV=1 | 11 | 214 | 1.0E-23 |
| sp|Q5ZL74|VAMP7_CHICK | Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1 | 11 | 214 | 3.0E-22 |
| sp|Q9JHW5|VAMP7_RAT | Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1 | 11 | 216 | 3.0E-22 |
| sp|Q9M376|VA727_ARATH | Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1 | 11 | 228 | 3.0E-22 |
| sp|P51809|VAMP7_HUMAN | Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3 | 11 | 214 | 7.0E-22 |
| sp|Q17QI5|VAMP7_BOVIN | Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1 | 11 | 214 | 8.0E-22 |
| sp|Q5RF94|VAMP7_PONAB | Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3 | 11 | 214 | 2.0E-21 |
| sp|P70280|VAMP7_MOUSE | Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=1 SV=1 | 11 | 214 | 6.0E-21 |
| sp|O23429|VA724_ARATH | Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2 | 11 | 214 | 6.0E-19 |
| sp|Q3T0Y8|VAMP8_BOVIN | Vesicle-associated membrane protein 8 OS=Bos taurus GN=VAMP8 PE=3 SV=1 | 142 | 219 | 6.0E-16 |
| sp|Q12255|NYV1_YEAST | Vacuolar v-SNARE NYV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NYV1 PE=1 SV=2 | 151 | 228 | 7.0E-15 |
| sp|Q5REQ5|VAMP8_PONAB | Vesicle-associated membrane protein 8 OS=Pongo abelii GN=VAMP8 PE=3 SV=1 | 142 | 219 | 2.0E-14 |
| sp|Q9BV40|VAMP8_HUMAN | Vesicle-associated membrane protein 8 OS=Homo sapiens GN=VAMP8 PE=1 SV=1 | 142 | 219 | 2.0E-14 |
| sp|O75379|VAMP4_HUMAN | Vesicle-associated membrane protein 4 OS=Homo sapiens GN=VAMP4 PE=1 SV=2 | 141 | 218 | 3.0E-14 |
| sp|Q32L97|VAMP4_BOVIN | Vesicle-associated membrane protein 4 OS=Bos taurus GN=VAMP4 PE=2 SV=1 | 141 | 218 | 3.0E-14 |
| sp|O70480|VAMP4_MOUSE | Vesicle-associated membrane protein 4 OS=Mus musculus GN=Vamp4 PE=1 SV=1 | 141 | 214 | 4.0E-13 |
| sp|O70404|VAMP8_MOUSE | Vesicle-associated membrane protein 8 OS=Mus musculus GN=Vamp8 PE=1 SV=1 | 137 | 214 | 9.0E-13 |
| sp|Q9WUF4|VAMP8_RAT | Vesicle-associated membrane protein 8 OS=Rattus norvegicus GN=Vamp8 PE=1 SV=1 | 142 | 214 | 2.0E-12 |
| sp|Q8VY69|VA723_ARATH | Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1 | 11 | 214 | 2.0E-12 |
| sp|P18489|SYB_DROME | Synaptobrevin OS=Drosophila melanogaster GN=Syb PE=2 SV=3 | 157 | 233 | 3.0E-12 |
| sp|Q92356|SYB1_SCHPO | Synaptobrevin homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=syb1 PE=3 SV=1 | 155 | 214 | 8.0E-12 |
| sp|P33328|SNC2_YEAST | Synaptobrevin homolog 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC2 PE=1 SV=2 | 155 | 218 | 2.0E-11 |
| sp|Q9Y7L0|SEC22_SCHPO | Protein transport protein sec22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec22 PE=3 SV=2 | 38 | 226 | 4.0E-11 |
| sp|Q7ZV15|S22BA_DANRE | Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1 | 36 | 226 | 1.0E-10 |
| sp|Q60WU2|SYB1_CAEBR | Synaptobrevin-1 OS=Caenorhabditis briggsae GN=snb-1 PE=3 SV=1 | 139 | 218 | 5.0E-10 |
| sp|Q5ZJW4|SC22B_CHICK | Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1 | 32 | 226 | 7.0E-10 |
| sp|O02495|SYB1_CAEEL | Synaptobrevin-1 OS=Caenorhabditis elegans GN=snb-1 PE=1 SV=1 | 157 | 219 | 8.0E-10 |
| sp|Q4KM74|SC22B_RAT | Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3 | 32 | 226 | 2.0E-09 |
| sp|Q5RAI9|SC22B_PONAB | Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3 | 32 | 226 | 2.0E-09 |
| sp|O08547|SC22B_MOUSE | Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3 | 32 | 226 | 2.0E-09 |
| sp|O08595|SC22B_CRIGR | Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3 | 32 | 226 | 3.0E-09 |
| sp|Q54GB3|SYBB_DICDI | Synaptobrevin-B OS=Dictyostelium discoideum GN=sybB PE=3 SV=1 | 145 | 233 | 4.0E-09 |
| sp|P63045|VAMP2_RAT | Vesicle-associated membrane protein 2 OS=Rattus norvegicus GN=Vamp2 PE=1 SV=2 | 157 | 220 | 1.0E-08 |
| sp|P63044|VAMP2_MOUSE | Vesicle-associated membrane protein 2 OS=Mus musculus GN=Vamp2 PE=1 SV=2 | 157 | 220 | 1.0E-08 |
| sp|Q9N0Y0|VAMP2_MACMU | Vesicle-associated membrane protein 2 OS=Macaca mulatta GN=VAMP2 PE=3 SV=3 | 157 | 220 | 1.0E-08 |
| sp|P63027|VAMP2_HUMAN | Vesicle-associated membrane protein 2 OS=Homo sapiens GN=VAMP2 PE=1 SV=3 | 157 | 220 | 1.0E-08 |
| sp|P63026|VAMP2_BOVIN | Vesicle-associated membrane protein 2 OS=Bos taurus GN=VAMP2 PE=1 SV=2 | 157 | 220 | 1.0E-08 |
| sp|Q62442|VAMP1_MOUSE | Vesicle-associated membrane protein 1 OS=Mus musculus GN=Vamp1 PE=1 SV=1 | 157 | 221 | 1.0E-08 |
| sp|Q0V7N0|VAMP1_BOVIN | Vesicle-associated membrane protein 1 OS=Bos taurus GN=VAMP1 PE=3 SV=2 | 157 | 221 | 1.0E-08 |
| sp|Q7SXP0|S22BB_DANRE | Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1 | 33 | 226 | 2.0E-08 |
| sp|Q4R8T0|VAMP3_MACFA | Vesicle-associated membrane protein 3 OS=Macaca fascicularis GN=VAMP3 PE=3 SV=1 | 141 | 217 | 2.0E-08 |
| sp|Q15836|VAMP3_HUMAN | Vesicle-associated membrane protein 3 OS=Homo sapiens GN=VAMP3 PE=1 SV=3 | 144 | 217 | 2.0E-08 |
| sp|O75396|SC22B_HUMAN | Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=4 | 32 | 226 | 2.0E-08 |
| sp|P63025|VAMP3_RAT | Vesicle-associated membrane protein 3 OS=Rattus norvegicus GN=Vamp3 PE=1 SV=1 | 142 | 216 | 3.0E-08 |
| sp|P63024|VAMP3_MOUSE | Vesicle-associated membrane protein 3 OS=Mus musculus GN=Vamp3 PE=1 SV=1 | 142 | 216 | 3.0E-08 |
| sp|P35589|SYB_APLCA | Synaptobrevin OS=Aplysia californica PE=2 SV=1 | 157 | 218 | 3.0E-08 |
| sp|P47193|VAMP2_XENLA | Vesicle-associated membrane protein 2 OS=Xenopus laevis GN=vamp2 PE=3 SV=3 | 157 | 220 | 3.0E-08 |
| sp|P13701|SYB_TORCA | Synaptobrevin OS=Torpedo californica PE=2 SV=1 | 157 | 218 | 5.0E-08 |
| sp|P31109|SNC1_YEAST | Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC1 PE=1 SV=1 | 157 | 214 | 5.0E-08 |
| sp|P23763|VAMP1_HUMAN | Vesicle-associated membrane protein 1 OS=Homo sapiens GN=VAMP1 PE=1 SV=1 | 157 | 221 | 5.0E-08 |
| sp|Q63666|VAMP1_RAT | Vesicle-associated membrane protein 1 OS=Rattus norvegicus GN=Vamp1 PE=1 SV=2 | 157 | 221 | 7.0E-08 |
| sp|Q6P7L4|SC22B_XENTR | Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1 | 33 | 226 | 7.0E-08 |
| sp|Q757A4|YKT6_ASHGO | Synaptobrevin homolog YKT6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YKT6 PE=3 SV=1 | 80 | 201 | 1.0E-07 |
| sp|P47194|SYB_DORPE | Synaptobrevin OS=Doryteuthis pealeii PE=1 SV=1 | 157 | 218 | 1.0E-07 |
| sp|Q2KJD2|VAMP3_BOVIN | Vesicle-associated membrane protein 3 OS=Bos taurus GN=VAMP3 PE=3 SV=1 | 151 | 216 | 1.0E-07 |
| sp|Q6BSL0|YKT6_DEBHA | Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YKT6 PE=3 SV=1 | 80 | 201 | 2.0E-07 |
| sp|Q6C880|SEC22_YARLI | Protein transport protein SEC22 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC22 PE=3 SV=1 | 32 | 208 | 3.0E-07 |
| sp|Q6C537|YKT6_YARLI | Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YKT6 PE=3 SV=1 | 78 | 196 | 5.0E-07 |
| sp|Q27236|SYBL_SCHMA | Synaptobrevin-like protein OS=Schistosoma mansoni PE=2 SV=1 | 157 | 216 | 9.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 214 | 233 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6365 MASSSTPATPLLYSCIAHKTTILSECTTSASSQASSLASLILPKIEHATPQKLTYTHGQHQIHYLSEAPSEHPEH PAAGGLTFLVVADAALGRRVPFGFLLEIRRRFLDAFPPASTDLAELPNYGAGAFNAELRRLMVDYGATAGGRDDA IGNARREIDDVRGIMTRNIESLLERGERVDLLVDKTDRLGGSAREFRVRSRGLKRQMWWKNVKLMALLALVLVLI VVAIVIGVKNAS* |
| Coding | >Hirsu2|6365 ATGGCGTCGTCATCCACACCGGCCACGCCCCTGCTATACTCGTGCATCGCGCACAAGACGACGATCCTGTCGGAA TGCACGACGTCGGCGTCGTCGCAGGCGTCGTCGCTGGCGTCGCTGATCCTGCCCAAGATCGAGCACGCGACGCCG CAGAAGTTGACGTACACGCACGGCCAGCACCAGATCCACTACCTGTCGGAGGCGCCGTCGGAGCACCCGGAGCAC CCGGCGGCGGGCGGGCTGACGTTCCTGGTGGTGGCGGACGCGGCGCTGGGCCGGCGCGTGCCCTTCGGCTTCCTG CTCGAGATCCGGCGGCGCTTCCTCGACGCCTTCCCGCCCGCCAGCACCGACCTGGCCGAGCTGCCCAACTACGGC GCCGGCGCCTTCAACGCCGAGCTGCGCCGCCTCATGGTCGACTACGGCGCCACGGCCGGCGGCCGCGACGACGCC ATCGGCAACGCCCGCCGCGAGATTGACGACGTCCGCGGCATCATGACGCGCAACATCGAGAGCCTGCTCGAGCGC GGCGAGCGCGTCGACCTGCTCGTCGACAAGACGGACCGCCTCGGCGGCAGCGCCCGCGAGTTCCGCGTCCGCAGC CGCGGCCTCAAGCGCCAGATGTGGTGGAAGAACGTCAAGCTCATGGCCCTGCTCGCCCTCGTCCTCGTCCTCATC GTCGTCGCCATCGTCATCGGCGTCAAGAACGCCTCCTGA |
| Transcript | >Hirsu2|6365 ATGGCGTCGTCATCCACACCGGCCACGCCCCTGCTATACTCGTGCATCGCGCACAAGACGACGATCCTGTCGGAA TGCACGACGTCGGCGTCGTCGCAGGCGTCGTCGCTGGCGTCGCTGATCCTGCCCAAGATCGAGCACGCGACGCCG CAGAAGTTGACGTACACGCACGGCCAGCACCAGATCCACTACCTGTCGGAGGCGCCGTCGGAGCACCCGGAGCAC CCGGCGGCGGGCGGGCTGACGTTCCTGGTGGTGGCGGACGCGGCGCTGGGCCGGCGCGTGCCCTTCGGCTTCCTG CTCGAGATCCGGCGGCGCTTCCTCGACGCCTTCCCGCCCGCCAGCACCGACCTGGCCGAGCTGCCCAACTACGGC GCCGGCGCCTTCAACGCCGAGCTGCGCCGCCTCATGGTCGACTACGGCGCCACGGCCGGCGGCCGCGACGACGCC ATCGGCAACGCCCGCCGCGAGATTGACGACGTCCGCGGCATCATGACGCGCAACATCGAGAGCCTGCTCGAGCGC GGCGAGCGCGTCGACCTGCTCGTCGACAAGACGGACCGCCTCGGCGGCAGCGCCCGCGAGTTCCGCGTCCGCAGC CGCGGCCTCAAGCGCCAGATGTGGTGGAAGAACGTCAAGCTCATGGCCCTGCTCGCCCTCGTCCTCGTCCTCATC GTCGTCGCCATCGTCATCGGCGTCAAGAACGCCTCCTGA |
| Gene | >Hirsu2|6365 ATGGCGTCGTCATCCACACCGGCCACGCCCCTGCTATAGTACGTTTCCCCCTCCGCTTTCCCCTCTCGCCCTCGC TTCCCTTCAGGAGGAAGAACAAGAAAAGGGGACGGGAGGGGAGGGTGGGGAGAAGGGAAGGGCGCAGACTCGGGC GCGGCTAAAATATATATATCAACAAAAACACACAGCTCGTGCATCGCGCACAAGACGACGATCCTGTCGGAATGC ACGACGTCGGCGTCGTCGCAGGCGTCGTCGCTGGCGTCGCTGATCCTGCCCAAGATCGAGCACGCGACGCCGCAG AAGTTGACGTACACGCACGGCCAGCACCAGATCCACTACCTGTCGGAGGCGCCGTCGGAGCACCCGGAGCACCCG GCGGCGGGCGGGCTGACGTTCCTGGTGGTGGCGGACGCGGCGCTGGGCCGGCGCGTGCCCTTCGGCTTCCTGCTC GAGATCCGGCGGCGCTTCCTCGACGCCTTCCCGCCCGCCAGCACCGACCTGGCCGAGCTGCCCAACTACGGCGCC GGCGCCTTCAACGCCGAGCTGCGCCGCCTCATGGTCGACTACGGCGCCACGGCCGGCGGCCGCGACGACGCCATC GGCAACGCCCGCCGCGAGATTGACGACGTCCGCGGCATCATGACGCGCAACATCGAGAGCCTGCTCGAGCGCGGC GAGCGCGTCGACCTGCTCGTCGACAAGACGGACCGCCTCGGCGGCAGCGCCCGCGAGTTCCGCGTCCGCAGCCGC GGCCTCAAGCGCCAGATGTGGTGGAAGAACGTCAAGCTCATGGCCCTGCTCGCCCTCGTCCTCGTCCTCATCGTC GTCGCCATCGTCATCGGCGTCAAGAACGCCTCCTGA |