© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|6362 |
| Gene name | |
| Location | Contig_325:810..1669 |
| Strand | - |
| Gene length (bp) | 859 |
| Transcript length (bp) | 732 |
| Coding sequence length (bp) | 732 |
| Protein length (aa) | 244 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09139 | Tam41_Mmp37 | Phosphatidate cytidylyltransferase, mitochondrial | 4.8E-24 | 150 | 240 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53230|TAM41_YEAST | Phosphatidate cytidylyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAM41 PE=1 SV=1 | 131 | 239 | 7.0E-14 |
| sp|O74339|TAM41_SCHPO | Phosphatidate cytidylyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tam41 PE=1 SV=3 | 145 | 239 | 2.0E-08 |
| sp|Q550P4|TAM41_DICDI | Phosphatidate cytidylyltransferase, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0277049 PE=3 SV=1 | 145 | 239 | 4.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004605 | phosphatidate cytidylyltransferase activity | Yes |
| GO:0032049 | cardiolipin biosynthetic process | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0009987 | cellular process | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:0046471 | phosphatidylglycerol metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0006655 | phosphatidylglycerol biosynthetic process | No |
| GO:0032048 | cardiolipin metabolic process | No |
| GO:0046474 | glycerophospholipid biosynthetic process | No |
| GO:0070567 | cytidylyltransferase activity | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0045017 | glycerolipid biosynthetic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006650 | glycerophospholipid metabolic process | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0016779 | nucleotidyltransferase activity | No |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008654 | phospholipid biosynthetic process | No |
| GO:0016740 | transferase activity | No |
| GO:0046486 | glycerolipid metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion|Plastid | Mitochondrial transit peptide | 0.1279 | 0.0815 | 0.096 | 0.1621 | 0.7596 | 0.8516 | 0.0661 | 0.063 | 0.1334 | 0.052 |
| Orthofinder run ID | 4 |
| Orthogroup | 3399 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6362 MAVLELRLAAAAAAPLLASASAFGATRLAPRRLASRRAVHSVSRIRTRTCWQPGTRLKSTSSRESDSSAAATAAA SPPSPTGSSSSEGSPSSSSSSSGKRRESAGGKFNLYGDEWEDSVDFAIKSFEELPHRLFGVNQHMIINYELKEAL RMMLRQFNAPIVYCFAYGSGVFPQESSSRSISEAEFRAVHPRPPAALVRAQKGAPKMIDFIFGVSYTQHWHSINM RQHRGHYSAVAALGWTAC* |
| Coding | >Hirsu2|6362 ATGGCTGTCCTCGAGCTGCGCCTCGCGGCGGCGGCGGCAGCTCCCTTGCTGGCCTCGGCCTCGGCATTCGGCGCC ACGCGGCTTGCTCCTCGACGCCTCGCATCCCGCCGCGCGGTGCACAGCGTATCCCGGATCCGTACACGGACGTGT TGGCAGCCGGGGACGAGGCTGAAATCGACGTCGTCGCGAGAGTCCGACTCGTCCGCCGCCGCCACCGCCGCCGCC TCACCTCCCTCCCCGACCGGCAGCAGCTCGAGCGAGGGCAGCCCGTCGTCGTCGTCGTCGTCGTCGGGCAAGAGA CGAGAGTCGGCGGGCGGCAAGTTCAACCTGTACGGCGACGAGTGGGAGGACTCGGTGGACTTCGCCATCAAGTCG TTCGAGGAGCTGCCGCACCGGCTGTTCGGCGTCAACCAGCACATGATCATCAACTACGAGCTCAAGGAGGCGCTG CGGATGATGCTGCGGCAGTTCAACGCGCCCATCGTCTACTGCTTCGCGTACGGGTCCGGCGTCTTCCCGCAGGAG AGCAGCAGCCGCAGCATCAGCGAGGCCGAGTTCCGGGCGGTGCACCCGCGGCCGCCGGCGGCGCTGGTGCGGGCG CAGAAGGGCGCGCCCAAGATGATCGACTTCATCTTCGGCGTCAGCTACACGCAGCACTGGCACTCGATCAACATG CGGCAGCACCGCGGCCACTACTCGGCCGTGGCCGCGCTCGGATGGACGGCATGCTGA |
| Transcript | >Hirsu2|6362 ATGGCTGTCCTCGAGCTGCGCCTCGCGGCGGCGGCGGCAGCTCCCTTGCTGGCCTCGGCCTCGGCATTCGGCGCC ACGCGGCTTGCTCCTCGACGCCTCGCATCCCGCCGCGCGGTGCACAGCGTATCCCGGATCCGTACACGGACGTGT TGGCAGCCGGGGACGAGGCTGAAATCGACGTCGTCGCGAGAGTCCGACTCGTCCGCCGCCGCCACCGCCGCCGCC TCACCTCCCTCCCCGACCGGCAGCAGCTCGAGCGAGGGCAGCCCGTCGTCGTCGTCGTCGTCGTCGGGCAAGAGA CGAGAGTCGGCGGGCGGCAAGTTCAACCTGTACGGCGACGAGTGGGAGGACTCGGTGGACTTCGCCATCAAGTCG TTCGAGGAGCTGCCGCACCGGCTGTTCGGCGTCAACCAGCACATGATCATCAACTACGAGCTCAAGGAGGCGCTG CGGATGATGCTGCGGCAGTTCAACGCGCCCATCGTCTACTGCTTCGCGTACGGGTCCGGCGTCTTCCCGCAGGAG AGCAGCAGCCGCAGCATCAGCGAGGCCGAGTTCCGGGCGGTGCACCCGCGGCCGCCGGCGGCGCTGGTGCGGGCG CAGAAGGGCGCGCCCAAGATGATCGACTTCATCTTCGGCGTCAGCTACACGCAGCACTGGCACTCGATCAACATG CGGCAGCACCGCGGCCACTACTCGGCCGTGGCCGCGCTCGGATGGACGGCATGCTGA |
| Gene | >Hirsu2|6362 ATGGCTGTCCTCGAGCTGCGCCTCGCGGTGAGTGCTCGTGTCTTGGCCATGCGCGGCGGCCTGCTGACCGACGCC TCACGCTGTCTGCAGGCGGCGGCGGCAGCTCCCTTGCTGGCCTCGGCCTCGGCATTCGGCGCCACGCGGCTTGCT CCTCGACGCCTCGCATCCCGCCGCGCGGTGCACAGCGTATCCCGGATCCGTACACGGACGTGTTGGCAGCCGGGG ACGAGGCTGAAATCGACGTCGTCGCGAGAGTCCGACTCGTCCGCCGCCGCCACCGCCGCCGCCTCACCTCCCTCC CCGACCGGCAGCAGCTCGAGCGAGGGCAGCCCGTCGTCGTCGTCGTCGTCGTCGGGCAAGAGACGAGAGTCGGCG GGCGGCAAGTTCAACCTGTACGGCGACGAGTGGGAGGACTCGGTGGACTTCGCCATCAAGTCGTTCGAGGAGCTG CCGCACCGGCTGTTCGGCGTCAACCAGCACATGATCATCAACTACGAGCTCAAGGAGGCGCTGCGGATGATGCTG CGGCAGTTCAACGCGCCCATCGTCTACTGCTTCGCGTACGGGTCCGGCGTCTTCCCGCAGGAGAGCAGCAGCCGC AGCATCAGCGAGGCCGAGTTCCGGGCGGTGCACCCGCGGCCGCCGGCGGCGCTGGTGCGGGCGCAGAAGGGCGCG CCCAAGATGATCGACTTCATCTTCGGCGTCAGCTACACGCAGCACTGGCACTCGATCAACATGCGGCAGCACCGC GGCCACTACTCGGCCGTGGCCGCGCTCGGGTCGGCCTTTGTGTCGCGCGTGCAGCGCTGGGGCGCCGGCGTCTAC TTCAACCCCTACGTCGAGATGGACGGCATGCTGA |