Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6347
Gene name
LocationContig_3238:190..447
Strand+
Gene length (bp)257
Transcript length (bp)204
Coding sequence length (bp)204
Protein length (aa) 68

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00083 Sugar_tr Sugar (and other) transporter 5.0E-06 4 57

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0055085 transmembrane transport Yes
GO:0022857 transmembrane transporter activity Yes
GO:0031224 intrinsic component of membrane No
GO:0008150 biological_process No
GO:0006810 transport No
GO:0051234 establishment of localization No
GO:0003674 molecular_function No
GO:0051179 localization No
GO:0044425 membrane part No
GO:0005575 cellular_component No
GO:0005215 transporter activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 4 26 22
2 31 53 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6347
MNHVGFVAGLAAGLWVGYGMSFWTGPAGQRWGWRVSILVQLLPAGFFAAGLLFLPETCVTVPVTSPP*
Coding >Hirsu2|6347
ATGAACCACGTCGGCTTCGTCGCCGGCCTGGCCGCCGGCCTGTGGGTCGGCTACGGCATGTCCTTCTGGACCGGC
CCGGCCGGCCAGCGCTGGGGCTGGAGGGTGTCGATCCTGGTCCAACTGCTGCCGGCCGGCTTCTTCGCGGCCGGC
CTGCTGTTCTTGCCCGAGACGTGCGTGACCGTCCCCGTTACGTCCCCCCCCTGA
Transcript >Hirsu2|6347
ATGAACCACGTCGGCTTCGTCGCCGGCCTGGCCGCCGGCCTGTGGGTCGGCTACGGCATGTCCTTCTGGACCGGC
CCGGCCGGCCAGCGCTGGGGCTGGAGGGTGTCGATCCTGGTCCAACTGCTGCCGGCCGGCTTCTTCGCGGCCGGC
CTGCTGTTCTTGCCCGAGACGTGCGTGACCGTCCCCGTTACGTCCCCCCCCTGA
Gene >Hirsu2|6347
ATGAACCACGTCGGCTTCGTCGCCGGCCTGGCCGCCGGCCTGTGGTAACGAACGGCCTTTCTCCCTCCATTCTCC
GCGTCCTGCTCACGCGCTCCAGGGTCGGCTACGGCATGTCCTTCTGGACCGGCCCGGCCGGCCAGCGCTGGGGCT
GGAGGGTGTCGATCCTGGTCCAACTGCTGCCGGCCGGCTTCTTCGCGGCCGGCCTGCTGTTCTTGCCCGAGACGT
GCGTGACCGTCCCCGTTACGTCCCCCCCCTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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