Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|6322
Gene name
Location	Contig_322:19733..20678
Strand	+
Gene length (bp)	945
Transcript length (bp)	945
Coding sequence length (bp)	945
Protein length (aa)	315

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04616	Glyco_hydro_43	Glycosyl hydrolases family 43	3.2E-25	27	306

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q2U1X8\|ABNC_ASPOR	Probable arabinan endo-1,5-alpha-L-arabinosidase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=abnC PE=3 SV=1	29	314	3.0E-07
sp\|B8NMD3\|ABNC_ASPFN	Probable arabinan endo-1,5-alpha-L-arabinosidase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=abnC PE=3 SV=2	29	314	3.0E-07

GO

GO Term	Description	Terminal node
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Yes
GO:0005975	carbohydrate metabolic process	Yes
GO:0016798	hydrolase activity, acting on glycosyl bonds	No
GO:0071704	organic substance metabolic process	No
GO:0008152	metabolic process	No
GO:0003824	catalytic activity	No
GO:0044238	primary metabolic process	No
GO:0008150	biological_process	No
GO:0016787	hydrolase activity	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 19	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|6322 MFSAFLVLMYRLAQLARGDTLAIDRNFPDPSIVKDRDGAWYAFATNDGERQVQVQAARATSPAGPWEVLDVDLLP DSGGFFTGNHTWAPDVRLLDDGSYVLYFSGQVRSDPAHHCVGVAFSSRIIGPYRPRPAPLLCDLGAGGQIDPAGF RDFDGRRYVTYKVDGNSLGRGGECNNGREPRVSTPIMLQELAANGVDKIGPPVQLLDRVGDEPLVEAPDIYRHPD GTYFLFFSAGCFSEPDYRINYATARNVRGPYTRARSSLLSSQNTLGLVAPGGATVSGADEMPMVFHANCPAGRCM HVQDFRVEGRRIRL*
Coding	>Hirsu2\|6322 ATGTTCTCGGCCTTCCTGGTGCTGATGTACCGGCTGGCGCAGCTGGCCCGGGGCGACACGCTGGCCATCGACCGA AACTTCCCGGACCCGAGCATCGTGAAGGACCGCGACGGCGCCTGGTACGCCTTCGCGACCAACGACGGCGAGCGG CAGGTGCAGGTGCAGGCGGCGCGGGCGACGTCGCCGGCCGGGCCGTGGGAGGTGCTCGACGTCGACCTGCTGCCG GACTCGGGCGGCTTCTTCACCGGCAACCACACGTGGGCGCCCGACGTGCGGCTGCTGGACGACGGCTCGTACGTG CTCTACTTCAGCGGGCAGGTCCGGTCGGACCCGGCCCACCACTGCGTCGGCGTCGCCTTCAGCTCGCGCATCATC GGCCCGTACCGGCCGCGCCCGGCGCCGCTGCTGTGCGACCTCGGCGCCGGCGGCCAGATCGACCCGGCCGGCTTC CGCGACTTCGACGGCCGCCGCTACGTCACTTACAAGGTCGACGGCAACAGCCTCGGCCGCGGCGGCGAGTGCAAC AACGGCCGCGAGCCGCGCGTGTCCACGCCCATCATGCTGCAGGAGCTGGCCGCCAACGGCGTCGACAAGATCGGC CCGCCCGTCCAGCTGCTCGACCGCGTCGGCGACGAGCCGCTCGTCGAGGCCCCCGACATCTACCGCCACCCCGAC GGCACCTACTTCCTCTTCTTCAGCGCCGGCTGCTTCTCCGAGCCCGACTACCGCATCAACTACGCCACCGCCCGC AACGTCCGCGGCCCCTACACCCGCGCCCGCAGCTCCCTGCTGTCCTCCCAGAACACGCTCGGCCTCGTCGCCCCC GGCGGCGCCACCGTCTCCGGCGCCGACGAGATGCCCATGGTCTTCCATGCCAACTGTCCTGCCGGCCGCTGCATG CACGTCCAAGACTTCCGCGTCGAGGGCAGGAGAATAAGACTATAA
Transcript	>Hirsu2\|6322 ATGTTCTCGGCCTTCCTGGTGCTGATGTACCGGCTGGCGCAGCTGGCCCGGGGCGACACGCTGGCCATCGACCGA AACTTCCCGGACCCGAGCATCGTGAAGGACCGCGACGGCGCCTGGTACGCCTTCGCGACCAACGACGGCGAGCGG CAGGTGCAGGTGCAGGCGGCGCGGGCGACGTCGCCGGCCGGGCCGTGGGAGGTGCTCGACGTCGACCTGCTGCCG GACTCGGGCGGCTTCTTCACCGGCAACCACACGTGGGCGCCCGACGTGCGGCTGCTGGACGACGGCTCGTACGTG CTCTACTTCAGCGGGCAGGTCCGGTCGGACCCGGCCCACCACTGCGTCGGCGTCGCCTTCAGCTCGCGCATCATC GGCCCGTACCGGCCGCGCCCGGCGCCGCTGCTGTGCGACCTCGGCGCCGGCGGCCAGATCGACCCGGCCGGCTTC CGCGACTTCGACGGCCGCCGCTACGTCACTTACAAGGTCGACGGCAACAGCCTCGGCCGCGGCGGCGAGTGCAAC AACGGCCGCGAGCCGCGCGTGTCCACGCCCATCATGCTGCAGGAGCTGGCCGCCAACGGCGTCGACAAGATCGGC CCGCCCGTCCAGCTGCTCGACCGCGTCGGCGACGAGCCGCTCGTCGAGGCCCCCGACATCTACCGCCACCCCGAC GGCACCTACTTCCTCTTCTTCAGCGCCGGCTGCTTCTCCGAGCCCGACTACCGCATCAACTACGCCACCGCCCGC AACGTCCGCGGCCCCTACACCCGCGCCCGCAGCTCCCTGCTGTCCTCCCAGAACACGCTCGGCCTCGTCGCCCCC GGCGGCGCCACCGTCTCCGGCGCCGACGAGATGCCCATGGTCTTCCATGCCAACTGTCCTGCCGGCCGCTGCATG CACGTCCAAGACTTCCGCGTCGAGGGCAGGAGAATAAGACTATAA
Gene	>Hirsu2\|6322 ATGTTCTCGGCCTTCCTGGTGCTGATGTACCGGCTGGCGCAGCTGGCCCGGGGCGACACGCTGGCCATCGACCGA AACTTCCCGGACCCGAGCATCGTGAAGGACCGCGACGGCGCCTGGTACGCCTTCGCGACCAACGACGGCGAGCGG CAGGTGCAGGTGCAGGCGGCGCGGGCGACGTCGCCGGCCGGGCCGTGGGAGGTGCTCGACGTCGACCTGCTGCCG GACTCGGGCGGCTTCTTCACCGGCAACCACACGTGGGCGCCCGACGTGCGGCTGCTGGACGACGGCTCGTACGTG CTCTACTTCAGCGGGCAGGTCCGGTCGGACCCGGCCCACCACTGCGTCGGCGTCGCCTTCAGCTCGCGCATCATC GGCCCGTACCGGCCGCGCCCGGCGCCGCTGCTGTGCGACCTCGGCGCCGGCGGCCAGATCGACCCGGCCGGCTTC CGCGACTTCGACGGCCGCCGCTACGTCACTTACAAGGTCGACGGCAACAGCCTCGGCCGCGGCGGCGAGTGCAAC AACGGCCGCGAGCCGCGCGTGTCCACGCCCATCATGCTGCAGGAGCTGGCCGCCAACGGCGTCGACAAGATCGGC CCGCCCGTCCAGCTGCTCGACCGCGTCGGCGACGAGCCGCTCGTCGAGGCCCCCGACATCTACCGCCACCCCGAC GGCACCTACTTCCTCTTCTTCAGCGCCGGCTGCTTCTCCGAGCCCGACTACCGCATCAACTACGCCACCGCCCGC AACGTCCGCGGCCCCTACACCCGCGCCCGCAGCTCCCTGCTGTCCTCCCAGAACACGCTCGGCCTCGTCGCCCCC GGCGGCGCCACCGTCTCCGGCGCCGACGAGATGCCCATGGTCTTCCATGCCAACTGTCCTGCCGGCCGCTGCATG CACGTCCAAGACTTCCGCGTCGAGGGCAGGAGAATAAGACTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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