Protein ID | Hirsu2|6269 |
Gene name | |
Location | Contig_32:5021..6738 |
Strand | - |
Gene length (bp) | 1717 |
Transcript length (bp) | 1473 |
Coding sequence length (bp) | 1473 |
Protein length (aa) | 491 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06863 | DUF1254 | Protein of unknown function (DUF1254) | 9.7E-30 | 65 | 201 |
PF06742 | DUF1214 | Protein of unknown function (DUF1214) | 9.2E-25 | 348 | 468 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.2886 | 0.1295 | 0.8879 | 0.1311 | 0.1703 | 0.0846 | 0.1628 | 0.2259 | 0.3103 | 0.1529 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 19 | 0.999398 |
Orthofinder run ID | 4 |
Orthogroup | 320 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6269 MLSACVYALALGALVGGTASDQKVLSPFADEGGSTAATAFAITYGYPVTQFALTFDSVLSSVGANSIINANDTAS AGSESVIRPNVDTLYSKFVVDLSHADVILTIPDIGDDRYYVFPFYDFWSNNFANLGSLDKTAPGNYLLRPSPAPS QVGIELSDDAASPYRGYVNYPTAYGAVFARILLRNQTEDLEVVHELQAQIGVVEVPRPGPALAPHLTVDLLGGGA LESLAPQFPGSFGRSALQAMFDVVAEVAPFNRPADPREAAAVAQRLAEAGVKDGSYSPPPDVDFTAANKLVSVSI AEVAEHMDSLGNDWENLPDEESGNFGNRYAARCYVGFLGYLQLVQHEAVYPAYTGSGLTGLSLGSDQSYLIKFVS GKPPVDGFWSITAYNNQSYLIDNSLDRYALGDRSNLTYPDGQPVYGDGDRNDPFSLLIQPSDVEPPANWTNNWLP APAGGGNFTVNLRFYGPEGTLLPGGSYVYPVVTKQKAITA* |
Coding | >Hirsu2|6269 ATGCTTTCCGCTTGCGTGTACGCCCTGGCTTTGGGCGCCCTCGTCGGTGGCACGGCGTCTGATCAGAAAGTACTC TCGCCGTTCGCCGACGAGGGCGGCTCGACCGCGGCTACGGCCTTTGCCATCACCTACGGCTATCCCGTTACCCAG TTTGCCTTGACCTTCGACTCGGTCCTGTCTTCGGTGGGGGCGAACTCGATCATCAACGCAAACGACACGGCCTCG GCCGGCTCCGAGAGCGTCATCCGCCCCAACGTCGACACTCTCTACAGCAAGTTCGTCGTCGACCTGTCGCATGCC GACGTCATCCTGACCATCCCCGACATTGGCGACGACCGCTACTACGTCTTCCCCTTCTACGACTTCTGGTCCAAC AACTTTGCGAATCTCGGCAGCCTGGACAAGACGGCCCCAGGCAACTATCTCCTTCGGCCCTCTCCGGCCCCGTCA CAGGTCGGGATCGAGCTGTCCGACGATGCCGCCTCTCCGTATCGCGGCTACGTCAACTACCCCACGGCCTACGGC GCCGTCTTCGCCCGGATCCTGCTGCGCAACCAGACGGAGGACCTCGAGGTCGTCCACGAGCTCCAGGCCCAGATC GGCGTCGTCGAGGTGCCGCGGCCCGGCCCGGCGCTCGCTCCGCACCTCACCGTCGACCTGCTCGGCGGCGGCGCG CTCGAGTCTTTGGCGCCGCAGTTCCCGGGCTCCTTCGGCCGCTCAGCGCTGCAGGCCATGTTCGACGTCGTGGCC GAGGTGGCGCCCTTCAACCGGCCGGCCGACCCTCGCGAAGCGGCGGCCGTGGCGCAGAGACTGGCCGAGGCCGGC GTCAAGGACGGCAGTTACTCTCCGCCGCCGGATGTCGACTTCACCGCCGCCAACAAGCTCGTCTCCGTCTCCATC GCCGAGGTCGCGGAGCACATGGACAGCCTTGGCAACGACTGGGAGAATCTGCCCGACGAGGAAAGCGGCAACTTC GGGAACCGCTATGCCGCCAGATGCTACGTCGGCTTCCTCGGATACCTGCAGCTCGTCCAGCACGAGGCCGTCTAT CCCGCCTACACCGGCTCCGGGCTGACGGGGCTGTCGCTCGGATCGGACCAGTCCTACCTGATAAAGTTCGTCTCC GGCAAGCCGCCGGTGGACGGCTTCTGGAGCATCACGGCCTACAACAACCAGAGCTACCTCATCGACAACTCGCTC GACCGGTACGCGCTCGGCGACCGGAGCAACCTGACCTACCCGGACGGCCAGCCGGTGTACGGCGACGGGGACCGC AACGACCCCTTTTCCCTCCTCATCCAGCCCAGCGACGTGGAGCCTCCGGCCAACTGGACAAACAACTGGTTGCCC GCGCCCGCCGGAGGGGGCAACTTTACGGTAAATTTGCGTTTCTACGGACCGGAAGGGACGCTGCTCCCCGGTGGA TCGTACGTCTATCCGGTTGTGACGAAGCAGAAGGCTATAACTGCCTGA |
Transcript | >Hirsu2|6269 ATGCTTTCCGCTTGCGTGTACGCCCTGGCTTTGGGCGCCCTCGTCGGTGGCACGGCGTCTGATCAGAAAGTACTC TCGCCGTTCGCCGACGAGGGCGGCTCGACCGCGGCTACGGCCTTTGCCATCACCTACGGCTATCCCGTTACCCAG TTTGCCTTGACCTTCGACTCGGTCCTGTCTTCGGTGGGGGCGAACTCGATCATCAACGCAAACGACACGGCCTCG GCCGGCTCCGAGAGCGTCATCCGCCCCAACGTCGACACTCTCTACAGCAAGTTCGTCGTCGACCTGTCGCATGCC GACGTCATCCTGACCATCCCCGACATTGGCGACGACCGCTACTACGTCTTCCCCTTCTACGACTTCTGGTCCAAC AACTTTGCGAATCTCGGCAGCCTGGACAAGACGGCCCCAGGCAACTATCTCCTTCGGCCCTCTCCGGCCCCGTCA CAGGTCGGGATCGAGCTGTCCGACGATGCCGCCTCTCCGTATCGCGGCTACGTCAACTACCCCACGGCCTACGGC GCCGTCTTCGCCCGGATCCTGCTGCGCAACCAGACGGAGGACCTCGAGGTCGTCCACGAGCTCCAGGCCCAGATC GGCGTCGTCGAGGTGCCGCGGCCCGGCCCGGCGCTCGCTCCGCACCTCACCGTCGACCTGCTCGGCGGCGGCGCG CTCGAGTCTTTGGCGCCGCAGTTCCCGGGCTCCTTCGGCCGCTCAGCGCTGCAGGCCATGTTCGACGTCGTGGCC GAGGTGGCGCCCTTCAACCGGCCGGCCGACCCTCGCGAAGCGGCGGCCGTGGCGCAGAGACTGGCCGAGGCCGGC GTCAAGGACGGCAGTTACTCTCCGCCGCCGGATGTCGACTTCACCGCCGCCAACAAGCTCGTCTCCGTCTCCATC GCCGAGGTCGCGGAGCACATGGACAGCCTTGGCAACGACTGGGAGAATCTGCCCGACGAGGAAAGCGGCAACTTC GGGAACCGCTATGCCGCCAGATGCTACGTCGGCTTCCTCGGATACCTGCAGCTCGTCCAGCACGAGGCCGTCTAT CCCGCCTACACCGGCTCCGGGCTGACGGGGCTGTCGCTCGGATCGGACCAGTCCTACCTGATAAAGTTCGTCTCC GGCAAGCCGCCGGTGGACGGCTTCTGGAGCATCACGGCCTACAACAACCAGAGCTACCTCATCGACAACTCGCTC GACCGGTACGCGCTCGGCGACCGGAGCAACCTGACCTACCCGGACGGCCAGCCGGTGTACGGCGACGGGGACCGC AACGACCCCTTTTCCCTCCTCATCCAGCCCAGCGACGTGGAGCCTCCGGCCAACTGGACAAACAACTGGTTGCCC GCGCCCGCCGGAGGGGGCAACTTTACGGTAAATTTGCGTTTCTACGGACCGGAAGGGACGCTGCTCCCCGGTGGA TCGTACGTCTATCCGGTTGTGACGAAGCAGAAGGCTATAACTGCCTGA |
Gene | >Hirsu2|6269 ATGCTTTCCGCTTGCGTGTACGCCCTGGCTTTGGGCGCCCTCGTCGGTGGCACGGCGTCTGATCAGAAAGTACTC TCGCCGTTCGCCGACGAGGGCGGCTCGACCGCGGCTACGGCCTTTGCCATCACCGTCCGTCACGCCCCTGAGCCG CCTCCTCTCGCCGTGCTCCTTGGCGTGTATGATGCCCGGCCGCCTGACTGTGCTCGCAGTACGGCTATCCCGTTA CCCAGTTTGCCTTGACCTTCGACTCGGTCCTGTCTTCGGTGGGGGCGAACTCGATCATCAACGCAAACGACACGG CCTCGGCCGGCTCCGAGAGCGTCATCCGCCCCAACGTCGACACTCTCTACAGCAAGTTCGTCGTCGACCTGTCGC ATGCCGACGTCATCCTGACCATCCCCGACATTGGCGACGACCGCTACTACGTCTTCCCCTTCTACGACTTGTCAG TGACTGTTCCGCCCCCCTTTCGGCCAAACTCGAGACAAGACGAACTGATGGCCAGATGAATCCTTTCGCCCTGTA GCTGGTCCAACAACTTTGCGAATCTCGGCAGCCTGGACAAGACGGCCCCAGGCAACTATCTCCTTCGGCCCTCTC CGGCCCCGTCACAGGTCGGGATCGAGCTGTCCGACGATGCCGCCTCTCCGTATCGCGGCTACGTCAACTACCCCA CGGCCTACGGCGCCGTCTTCGCCCGGATCCTGCTGCGCAACCAGACGGAGGACCTCGAGGTCGTCCACGAGCTCC AGGCCCAGATCGGCGTCGTCGAGGTGCCGCGGCCCGGCCCGGCGCTCGCTCCGCACCTCACCGTCGACCTGCTCG GCGGCGGCGCGCTCGAGTCTTTGGCGCCGCAGTTCCCGGGCTCCTTCGGCCGCTCAGCGCTGCAGGCCATGTTCG ACGTCGTGGCCGAGGTGGCGCCCTTCAACCGGCCGGCCGACCCTCGCGAAGCGGCGGCCGTGGCGCAGAGACTGG CCGAGGCCGGCGTCAAGGACGGCAGTTACTCTCCGCCGCCGGATGTCGACTTCACCGCCGCCAACAAGCTCGTCT CCGTCTCCATCGCCGAGGTCGCGGAGCACATGGACAGCCTTGGCAACGACTGGGAGAATCTGCCCGACGAGGAAA GCGGCAACTTCGGGAACCGCTATGCCGCCAGATGCTACGTCGGCTTCCTCGGATACCTGCAGCTCGTCCAGCACG AGGCCGTCTATCCCGCCTACACCGGCTCCGGGCTGACGGGGCTGTCGCTCGGATCGGACCAGTCCTACCTGATAA AGTTCGTCTCCGGCAAGCCGCCGGTGGACGGCTTCTGGAGCATCACGGCCTACAACAACCAGAGCTACCTCATCG ACAACTCGCTCGACCGGTACGCGCTCGGCGACCGGAGCAACCTGACCTACCCGGACGGCCAGCCGGTGTACGGCG ACGGGGACCGCAACGACCCCTTTTCCCTCCTCATCCAGCCCAGCGACGTGGAGCCTCCGGCCAACTGGACAAACA ACTGGTTGCCCGCGCCCGCCGGAGGGGGCAACTTTACGGTAAATTGTTCGTCGGCTCTCCCCCCCCCCCTCTCGT GACGATTTCAGTTTCACGGCTTCCGAGCTGACTCGAAGCCGTGCGTTCTGCAGTGCGTTTCTACGGACCGGAAGG GACGCTGCTCCCCGGTGGATCGTACGTCTATCCGGTTGTGACGAAGCAGAAGGCTATAACTGCCTGA |