© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6256 |
| Gene name | |
| Location | Contig_319:19600..20218 |
| Strand | - |
| Gene length (bp) | 618 |
| Transcript length (bp) | 534 |
| Coding sequence length (bp) | 534 |
| Protein length (aa) | 178 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.0684 | 0.0908 | 0.4153 | 0.267 | 0.1387 | 0.0208 | 0.6349 | 0.3175 | 0.2755 | 0.0099 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 21 | 0.999769 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 133 | 155 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3365 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6256 MARSQLLALVLAALMVAIAAASAPTFCKCTCFKNSTIIPLGPASQLKESSSSPSSFLVKRNVHPDSPVPSPSDGF RPQAAVMGNSYGRRSASTSCSECTKAFCLGQGMDFCKEAKEENVMTHCFQRDSNKDKIIVWAFILGTVALLGWAA FKRIVEWREGRAMGHQAINYTPVAAAQ* |
| Coding | >Hirsu2|6256 ATGGCGAGGTCGCAGCTGCTGGCGCTCGTGCTTGCAGCGCTCATGGTGGCCATAGCAGCAGCCTCCGCACCGACC TTTTGCAAATGCACTTGCTTCAAGAACAGCACAATCATCCCTCTCGGTCCGGCCAGCCAGCTCAAAGAGTCGTCC TCTTCGCCATCGTCATTCCTCGTCAAGCGGAATGTCCATCCCGATTCCCCCGTCCCGAGCCCGTCAGACGGCTTC CGTCCCCAGGCGGCGGTGATGGGCAACAGCTACGGCCGCCGGTCGGCTTCGACGTCTTGCTCCGAGTGCACCAAG GCCTTCTGCCTCGGCCAGGGCATGGACTTCTGCAAGGAGGCAAAGGAGGAGAACGTCATGACCCACTGCTTCCAG CGCGACAGCAACAAGGATAAGATTATTGTTTGGGCCTTCATTCTGGGCACGGTAGCGCTGCTTGGCTGGGCGGCC TTCAAGCGTATCGTCGAGTGGCGCGAGGGCCGAGCCATGGGTCATCAGGCCATCAACTACACGCCTGTAGCGGCT GCCCAGTAG |
| Transcript | >Hirsu2|6256 ATGGCGAGGTCGCAGCTGCTGGCGCTCGTGCTTGCAGCGCTCATGGTGGCCATAGCAGCAGCCTCCGCACCGACC TTTTGCAAATGCACTTGCTTCAAGAACAGCACAATCATCCCTCTCGGTCCGGCCAGCCAGCTCAAAGAGTCGTCC TCTTCGCCATCGTCATTCCTCGTCAAGCGGAATGTCCATCCCGATTCCCCCGTCCCGAGCCCGTCAGACGGCTTC CGTCCCCAGGCGGCGGTGATGGGCAACAGCTACGGCCGCCGGTCGGCTTCGACGTCTTGCTCCGAGTGCACCAAG GCCTTCTGCCTCGGCCAGGGCATGGACTTCTGCAAGGAGGCAAAGGAGGAGAACGTCATGACCCACTGCTTCCAG CGCGACAGCAACAAGGATAAGATTATTGTTTGGGCCTTCATTCTGGGCACGGTAGCGCTGCTTGGCTGGGCGGCC TTCAAGCGTATCGTCGAGTGGCGCGAGGGCCGAGCCATGGGTCATCAGGCCATCAACTACACGCCTGTAGCGGCT GCCCAGTAG |
| Gene | >Hirsu2|6256 ATGGCGAGGTCGCAGCTGCTGGCGCTCGTGCTTGCAGCGCTCATGGTGGCCATAGCAGCAGCCTGTACGTGCCCG GCTTCCATTTCACTGCTGTCGCGTGCCCATCGAGCTGGGGCGAACGGCTGACTGACCCGAGTTCAACCTGCAGCC GCACCGACCTTTTGCAAATGCACTTGCTTCAAGAACAGCACAATCATCCCTCTCGGTCCGGCCAGCCAGCTCAAA GAGTCGTCCTCTTCGCCATCGTCATTCCTCGTCAAGCGGAATGTCCATCCCGATTCCCCCGTCCCGAGCCCGTCA GACGGCTTCCGTCCCCAGGCGGCGGTGATGGGCAACAGCTACGGCCGCCGGTCGGCTTCGACGTCTTGCTCCGAG TGCACCAAGGCCTTCTGCCTCGGCCAGGGCATGGACTTCTGCAAGGAGGCAAAGGAGGAGAACGTCATGACCCAC TGCTTCCAGCGCGACAGCAACAAGGATAAGATTATTGTTTGGGCCTTCATTCTGGGCACGGTAGCGCTGCTTGGC TGGGCGGCCTTCAAGCGTATCGTCGAGTGGCGCGAGGGCCGAGCCATGGGTCATCAGGCCATCAACTACACGCCT GTAGCGGCTGCCCAGTAG |