Protein ID | Hirsu2|6256 |
Gene name | |
Location | Contig_319:19600..20218 |
Strand | - |
Gene length (bp) | 618 |
Transcript length (bp) | 534 |
Coding sequence length (bp) | 534 |
Protein length (aa) | 178 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide | 0.0684 | 0.0908 | 0.4153 | 0.267 | 0.1387 | 0.0208 | 0.6349 | 0.3175 | 0.2755 | 0.0099 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 21 | 0.999769 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 26 | 19 |
2 | 133 | 155 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3365 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6256 MARSQLLALVLAALMVAIAAASAPTFCKCTCFKNSTIIPLGPASQLKESSSSPSSFLVKRNVHPDSPVPSPSDGF RPQAAVMGNSYGRRSASTSCSECTKAFCLGQGMDFCKEAKEENVMTHCFQRDSNKDKIIVWAFILGTVALLGWAA FKRIVEWREGRAMGHQAINYTPVAAAQ* |
Coding | >Hirsu2|6256 ATGGCGAGGTCGCAGCTGCTGGCGCTCGTGCTTGCAGCGCTCATGGTGGCCATAGCAGCAGCCTCCGCACCGACC TTTTGCAAATGCACTTGCTTCAAGAACAGCACAATCATCCCTCTCGGTCCGGCCAGCCAGCTCAAAGAGTCGTCC TCTTCGCCATCGTCATTCCTCGTCAAGCGGAATGTCCATCCCGATTCCCCCGTCCCGAGCCCGTCAGACGGCTTC CGTCCCCAGGCGGCGGTGATGGGCAACAGCTACGGCCGCCGGTCGGCTTCGACGTCTTGCTCCGAGTGCACCAAG GCCTTCTGCCTCGGCCAGGGCATGGACTTCTGCAAGGAGGCAAAGGAGGAGAACGTCATGACCCACTGCTTCCAG CGCGACAGCAACAAGGATAAGATTATTGTTTGGGCCTTCATTCTGGGCACGGTAGCGCTGCTTGGCTGGGCGGCC TTCAAGCGTATCGTCGAGTGGCGCGAGGGCCGAGCCATGGGTCATCAGGCCATCAACTACACGCCTGTAGCGGCT GCCCAGTAG |
Transcript | >Hirsu2|6256 ATGGCGAGGTCGCAGCTGCTGGCGCTCGTGCTTGCAGCGCTCATGGTGGCCATAGCAGCAGCCTCCGCACCGACC TTTTGCAAATGCACTTGCTTCAAGAACAGCACAATCATCCCTCTCGGTCCGGCCAGCCAGCTCAAAGAGTCGTCC TCTTCGCCATCGTCATTCCTCGTCAAGCGGAATGTCCATCCCGATTCCCCCGTCCCGAGCCCGTCAGACGGCTTC CGTCCCCAGGCGGCGGTGATGGGCAACAGCTACGGCCGCCGGTCGGCTTCGACGTCTTGCTCCGAGTGCACCAAG GCCTTCTGCCTCGGCCAGGGCATGGACTTCTGCAAGGAGGCAAAGGAGGAGAACGTCATGACCCACTGCTTCCAG CGCGACAGCAACAAGGATAAGATTATTGTTTGGGCCTTCATTCTGGGCACGGTAGCGCTGCTTGGCTGGGCGGCC TTCAAGCGTATCGTCGAGTGGCGCGAGGGCCGAGCCATGGGTCATCAGGCCATCAACTACACGCCTGTAGCGGCT GCCCAGTAG |
Gene | >Hirsu2|6256 ATGGCGAGGTCGCAGCTGCTGGCGCTCGTGCTTGCAGCGCTCATGGTGGCCATAGCAGCAGCCTGTACGTGCCCG GCTTCCATTTCACTGCTGTCGCGTGCCCATCGAGCTGGGGCGAACGGCTGACTGACCCGAGTTCAACCTGCAGCC GCACCGACCTTTTGCAAATGCACTTGCTTCAAGAACAGCACAATCATCCCTCTCGGTCCGGCCAGCCAGCTCAAA GAGTCGTCCTCTTCGCCATCGTCATTCCTCGTCAAGCGGAATGTCCATCCCGATTCCCCCGTCCCGAGCCCGTCA GACGGCTTCCGTCCCCAGGCGGCGGTGATGGGCAACAGCTACGGCCGCCGGTCGGCTTCGACGTCTTGCTCCGAG TGCACCAAGGCCTTCTGCCTCGGCCAGGGCATGGACTTCTGCAAGGAGGCAAAGGAGGAGAACGTCATGACCCAC TGCTTCCAGCGCGACAGCAACAAGGATAAGATTATTGTTTGGGCCTTCATTCTGGGCACGGTAGCGCTGCTTGGC TGGGCGGCCTTCAAGCGTATCGTCGAGTGGCGCGAGGGCCGAGCCATGGGTCATCAGGCCATCAACTACACGCCT GTAGCGGCTGCCCAGTAG |