© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6211 |
| Gene name | |
| Location | Contig_316:19245..20428 |
| Strand | - |
| Gene length (bp) | 1183 |
| Transcript length (bp) | 969 |
| Coding sequence length (bp) | 969 |
| Protein length (aa) | 323 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03878 | YIF1 | YIF1 | 1.1E-99 | 68 | 320 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87148|YIF1_SCHPO | Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrf1 PE=3 SV=1 | 10 | 320 | 8.0E-79 |
| sp|Q4FZQ0|YF1BB_XENLA | Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1 | 66 | 320 | 5.0E-45 |
| sp|Q3T196|YIF1A_BOVIN | Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1 | 27 | 284 | 2.0E-44 |
| sp|Q6GN58|YF1BA_XENLA | Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1 | 66 | 320 | 3.0E-44 |
| sp|Q6P301|YIF1B_XENTR | Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1 | 66 | 320 | 1.0E-43 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87148|YIF1_SCHPO | Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrf1 PE=3 SV=1 | 10 | 320 | 8.0E-79 |
| sp|Q4FZQ0|YF1BB_XENLA | Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1 | 66 | 320 | 5.0E-45 |
| sp|Q3T196|YIF1A_BOVIN | Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1 | 27 | 284 | 2.0E-44 |
| sp|Q6GN58|YF1BA_XENLA | Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1 | 66 | 320 | 3.0E-44 |
| sp|Q6P301|YIF1B_XENTR | Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1 | 66 | 320 | 1.0E-43 |
| sp|Q5U3G6|YIF1B_DANRE | Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2 | 23 | 320 | 2.0E-43 |
| sp|Q6PC24|YIF1A_DANRE | Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1 | 21 | 287 | 4.0E-42 |
| sp|Q5BJH7|YIF1B_HUMAN | Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1 | 33 | 320 | 2.0E-41 |
| sp|O95070|YIF1A_HUMAN | Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2 | 27 | 284 | 2.0E-40 |
| sp|Q9CX30|YIF1B_MOUSE | Protein YIF1B OS=Mus musculus GN=Yif1b PE=1 SV=2 | 66 | 320 | 2.0E-39 |
| sp|Q91XB7|YIF1A_MOUSE | Protein YIF1A OS=Mus musculus GN=Yif1a PE=1 SV=1 | 30 | 284 | 6.0E-36 |
| sp|P53845|YIF1_YEAST | Protein transport protein YIF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIF1 PE=1 SV=1 | 33 | 319 | 1.0E-30 |
| sp|Q6PEC3|YIF1B_RAT | Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 SV=2 | 66 | 187 | 7.0E-20 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005789 | endoplasmic reticulum membrane | Yes |
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Yes |
| GO:0051649 | establishment of localization in cell | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0051641 | cellular localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005575 | cellular_component | No |
| GO:0031090 | organelle membrane | No |
| GO:0016020 | membrane | No |
| GO:0046907 | intracellular transport | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 159 | 178 | 19 |
| 2 | 193 | 215 | 22 |
| 3 | 222 | 244 | 22 |
| 4 | 248 | 270 | 22 |
| 5 | 303 | 320 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6211 MQRASYGQSPPLHHPVPQHVSSVPQLRSPPPPTGSAQSQQQAYGGTPYQQQGAAAAGNAFGGYGQFMNDPTAQVA AQFGQTAFKHGQEYVEQNFGRYVNVSALKHYFNVSNFYVVNKLFLVLFPWRHKPWSRKQAVGANGQEGWYLPPRE DINSPDMYIPVMALVTYILLSTLIAGLGGKFQPELLGYTATRGLVVVIVEIIALKLGCYLLSISSQSQLLDLIAY SGYKFVGIIATIAIAQVVNGGKGTGGVAGWTVFVYTFLATSFFLMRSLKYVLLPETSGGTGGPMQTDSRAKRNQR TQFLFFYSYAVQGFFMGMLTSS* |
| Coding | >Hirsu2|6211 ATGCAACGGGCGTCGTACGGGCAGTCGCCCCCGTTGCACCACCCGGTGCCCCAGCACGTTTCGTCGGTCCCCCAG CTCCGGTCGCCGCCGCCGCCGACGGGCTCGGCCCAGTCGCAACAGCAGGCCTATGGCGGGACACCCTACCAGCAG CAGGGCGCCGCGGCGGCCGGCAACGCCTTTGGCGGCTACGGCCAGTTCATGAACGACCCGACCGCTCAGGTGGCT GCCCAGTTCGGCCAGACGGCCTTCAAGCACGGCCAGGAATACGTGGAGCAAAATTTCGGCCGCTATGTCAACGTC TCTGCCCTCAAGCACTACTTCAACGTCTCCAACTTCTACGTCGTCAACAAGCTCTTCCTCGTCCTCTTCCCTTGG AGGCACAAGCCTTGGTCGCGCAAGCAAGCTGTCGGCGCCAACGGCCAGGAGGGATGGTATCTGCCTCCGCGAGAG GACATCAACAGTCCTGACATGTACATCCCAGTCATGGCCCTGGTCACGTACATTCTCTTGTCGACACTCATCGCC GGGCTGGGAGGCAAATTCCAGCCGGAACTGCTGGGATATACGGCAACGCGAGGGCTGGTGGTGGTCATTGTCGAG ATCATTGCGCTTAAGCTCGGCTGTTACCTGTTGAGCATCTCGAGCCAGTCCCAACTCCTCGACCTCATTGCCTAC TCCGGGTACAAGTTTGTCGGTATCATCGCCACCATCGCCATTGCCCAGGTTGTCAACGGCGGCAAGGGCACGGGT GGCGTGGCTGGTTGGACCGTTTTCGTCTACACCTTTTTGGCCACCTCCTTCTTTCTTATGCGGTCCCTGAAATAC GTCCTACTGCCAGAGACATCTGGGGGTACAGGCGGCCCCATGCAAACCGACTCACGGGCGAAGCGGAACCAGCGG ACCCAGTTTCTCTTTTTTTACTCATACGCCGTCCAGGGCTTCTTCATGGGGATGCTCACCTCGTCTTGA |
| Transcript | >Hirsu2|6211 ATGCAACGGGCGTCGTACGGGCAGTCGCCCCCGTTGCACCACCCGGTGCCCCAGCACGTTTCGTCGGTCCCCCAG CTCCGGTCGCCGCCGCCGCCGACGGGCTCGGCCCAGTCGCAACAGCAGGCCTATGGCGGGACACCCTACCAGCAG CAGGGCGCCGCGGCGGCCGGCAACGCCTTTGGCGGCTACGGCCAGTTCATGAACGACCCGACCGCTCAGGTGGCT GCCCAGTTCGGCCAGACGGCCTTCAAGCACGGCCAGGAATACGTGGAGCAAAATTTCGGCCGCTATGTCAACGTC TCTGCCCTCAAGCACTACTTCAACGTCTCCAACTTCTACGTCGTCAACAAGCTCTTCCTCGTCCTCTTCCCTTGG AGGCACAAGCCTTGGTCGCGCAAGCAAGCTGTCGGCGCCAACGGCCAGGAGGGATGGTATCTGCCTCCGCGAGAG GACATCAACAGTCCTGACATGTACATCCCAGTCATGGCCCTGGTCACGTACATTCTCTTGTCGACACTCATCGCC GGGCTGGGAGGCAAATTCCAGCCGGAACTGCTGGGATATACGGCAACGCGAGGGCTGGTGGTGGTCATTGTCGAG ATCATTGCGCTTAAGCTCGGCTGTTACCTGTTGAGCATCTCGAGCCAGTCCCAACTCCTCGACCTCATTGCCTAC TCCGGGTACAAGTTTGTCGGTATCATCGCCACCATCGCCATTGCCCAGGTTGTCAACGGCGGCAAGGGCACGGGT GGCGTGGCTGGTTGGACCGTTTTCGTCTACACCTTTTTGGCCACCTCCTTCTTTCTTATGCGGTCCCTGAAATAC GTCCTACTGCCAGAGACATCTGGGGGTACAGGCGGCCCCATGCAAACCGACTCACGGGCGAAGCGGAACCAGCGG ACCCAGTTTCTCTTTTTTTACTCATACGCCGTCCAGGGCTTCTTCATGGGGATGCTCACCTCGTCTTGA |
| Gene | >Hirsu2|6211 ATGCAACGGGCGTCGTACGGGCAGTCGCCCCCGTTGCACCACCCGGTGCCCCAGCACGTTTCGTCGGTCCCCCAG CTCCGGTCGCCGCCGCCGCCGACGGGCTCGGCCCAGTCGCAACAGCAGGCCTATGGCGGGACACCCTACCAGCAG CAGGGCGCCGCGGCGGCCGGCAACGCCTTTGGCGGCTACGGCCAGTTCATGAACGACCCGACCGCTCAGGTGGCT GCCCAGTTCGGCCAGACGGCCTTCAAGCACGGCCAGGAATACGTGGAGCAAAATGTTGGTCGCGACGCCCTGGGT CCCGGGCCTCTTTTGCCCTTGACCGCATCACTCTAACCCAGCCCCCCTTTGCAGTTCGGCCGCTATGTCAACGTC TCTGCCCTCAAGCACTACTTCAACGTCTCCAACTTCTACGTCGTCAACAAGCTCTTCCTCGTCCTCTTCCCTTGG AGGCACAAGCCTTGGTCGCGCAAGCAAGCTGTCGGCGCCAACGGCCAGGAGGGATGGTATCTGCCTCCGCGAGAG GACATCAACAGTCCTGACATGTACATCCCAGGTCAGCAAGCTGTTTTCCGCACTCACCCACCCCCACCCCTCGCG TGGCGCTGACAAACTCTCTCTCCAGTCATGGCCCTGGTCACGTACATTCTCTTGTCGACACTCATCGCCGGGCTG GGAGGCAAATTCCAGCCGGAACTGCTGGGATATACGGCAACGCGAGGGCTGGTGGTGGTCATTGTCGAGATCATT GCGCTTAAGCTCGGCTGTTACCTGTTGAGCATCTCGAGCCAGTCCCAACTCCTCGACCTCATTGCCTACTCCGGG TACAAGTTTGTCGGTATCATCGCCACCATCGCCATTGCCCAGGTTGTCAACGGCGGCAAGGGCACGGGTGGCGTG GCTGGTTGGACCGTTTTCGTCTACACCTTTTTGGCCACCTCCTTCTTTCTTGTAGGTGCTCTCACGCCCTCTCGG CTCGTCGTCAGGCCGCTTGGTGCTTTCTGGCTAACAGACCTTCCAGATGCGGTCCCTGAAATACGTCCTACTGCC AGAGACATCTGGGGGTACAGGCGGCCCCATGCAAACCGACTCACGGGCGAAGCGGAACCAGCGGACCCAGTTTCT CTTTTTTTACTCATACGCCGTCCAGGGCTTCTTCATGGGGATGCTCACCTCGTCTTGA |