© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6210 |
| Gene name | |
| Location | Contig_316:17672..18612 |
| Strand | - |
| Gene length (bp) | 940 |
| Transcript length (bp) | 663 |
| Coding sequence length (bp) | 663 |
| Protein length (aa) | 221 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 1.1E-11 | 161 | 215 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 45 | 67 | 22 |
| 3 | 171 | 193 | 22 |
| 4 | 200 | 219 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6210 MATESGTSRAILAATLQAALLGCLSNVLAQLITASRNKTELAVDWIPVFQFLLFSIVSTPPNFLWQVFLESTYPA HPPVRHRKKSDEAEAGRRAPLSVRNTAAKFALDQTVGAAVNTLLFSTFIHALQEAMAPAPRLTSLPAAVTYWTGP GAVDFGRVRLDAVLDAARAEFWPIVVAGLKMWPAVSLLNFTVVKTVEARNLVGALAGVAWGIYMSMMAAA* |
| Coding | >Hirsu2|6210 ATGGCGACTGAAAGCGGAACATCTCGCGCCATACTGGCCGCGACGCTGCAGGCGGCTCTGCTCGGCTGCCTGTCG AACGTGCTGGCGCAGCTCATCACGGCCAGCAGGAACAAGACCGAGCTGGCCGTCGACTGGATACCCGTCTTCCAA TTCCTGCTCTTCAGCATCGTCAGCACGCCTCCCAACTTCCTCTGGCAAGTGTTTCTAGAGTCGACGTACCCGGCG CACCCGCCGGTGCGCCACCGCAAGAAGTCGGACGAGGCCGAGGCCGGGCGGCGCGCGCCGCTGTCGGTGCGCAAC ACGGCGGCCAAGTTCGCGCTGGACCAGACGGTCGGGGCGGCCGTCAACACGCTGCTCTTCAGCACCTTCATCCAC GCCCTGCAGGAGGCCATGGCGCCGGCGCCGCGCCTCACCAGCCTGCCGGCGGCCGTCACTTACTGGACCGGCCCG GGGGCCGTCGACTTTGGGCGCGTGCGCCTCGACGCGGTCCTCGACGCCGCGCGCGCTGAGTTCTGGCCCATCGTC GTCGCCGGCCTCAAGATGTGGCCCGCCGTGAGCCTGCTGAACTTTACCGTCGTCAAGACGGTCGAGGCCCGCAAC CTGGTCGGTGCCCTGGCCGGCGTGGCGTGGGGCATCTACATGAGCATGATGGCGGCCGCATAG |
| Transcript | >Hirsu2|6210 ATGGCGACTGAAAGCGGAACATCTCGCGCCATACTGGCCGCGACGCTGCAGGCGGCTCTGCTCGGCTGCCTGTCG AACGTGCTGGCGCAGCTCATCACGGCCAGCAGGAACAAGACCGAGCTGGCCGTCGACTGGATACCCGTCTTCCAA TTCCTGCTCTTCAGCATCGTCAGCACGCCTCCCAACTTCCTCTGGCAAGTGTTTCTAGAGTCGACGTACCCGGCG CACCCGCCGGTGCGCCACCGCAAGAAGTCGGACGAGGCCGAGGCCGGGCGGCGCGCGCCGCTGTCGGTGCGCAAC ACGGCGGCCAAGTTCGCGCTGGACCAGACGGTCGGGGCGGCCGTCAACACGCTGCTCTTCAGCACCTTCATCCAC GCCCTGCAGGAGGCCATGGCGCCGGCGCCGCGCCTCACCAGCCTGCCGGCGGCCGTCACTTACTGGACCGGCCCG GGGGCCGTCGACTTTGGGCGCGTGCGCCTCGACGCGGTCCTCGACGCCGCGCGCGCTGAGTTCTGGCCCATCGTC GTCGCCGGCCTCAAGATGTGGCCCGCCGTGAGCCTGCTGAACTTTACCGTCGTCAAGACGGTCGAGGCCCGCAAC CTGGTCGGTGCCCTGGCCGGCGTGGCGTGGGGCATCTACATGAGCATGATGGCGGCCGCATAG |
| Gene | >Hirsu2|6210 ATGGCGACTGAAAGCGGAACATCTCGCGCCATACTGGCCGCGACGCTGCAGGCGGCTCTGCTCGGCTGCCTGTCG AACGTGCTGGCGCAGCTCATCACGGCCAGCAGGAACAAGGTGAGTCGGGGCCAGCAATCCGGGCTCCCAGGCCCC CTCGGCTCTCCAGACCGTCCGTCTGCTGACTCTGCCTCGTCTGCGTGCGCGGCTCCGGGCGGGATGCAGACCGAG CTGGCCGTCGACTGGATACCCGTCTTCCAATTCCTGCTCTTCAGCATCGTCAGCACGCCTCCCAACTTCCTCTGG TGAGCCTCCGGCCTCGTCCCCTCCCGTCGCGGCCCCCCGCCAGCCAGACATTCGGTTGCTCATCATCGGAGACNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCTTTGT CTCTCTCCCGCCTCCCGTCAGGCAAGTGTTTCTAGAGTCGACGTACCCGGCGCACCCGCCGGTGCGCCACCGCAA GAAGTCGGACGAGGCCGAGGCCGGGCGGCGCGCGCCGCTGTCGGTGCGCAACACGGCGGCCAAGTTCGCGCTGGA CCAGACGGTCGGGGCGGCCGTCAACACGCTGCTCTTCAGCACCTTCATCCACGCCCTGCAGGAGGCCATGGCGCC GGCGCCGCGCCTCACCAGCCTGCCGGCGGCCGTCACTTACTGGACCGGCCCGGGGGCCGTCGACTTTGGGCGCGT GCGCCTCGACGCGGTCCTCGACGCCGCGCGCGCTGAGTTCTGGCCCATCGTCGTCGCCGGCCTCAAGATGTGGCC CGCCGTGAGCCTGCTGAACTTTACCGTCGTCAAGACGGTCGAGGCCCGCAACCTGGTCGGTGCCCTGGCCGGCGT GGCGTGGGGCATCTACATGAGCATGATGGCGGCCGCATAG |