Protein ID | Hirsu2|62 |
Gene name | |
Location | Contig_1006:5401..6256 |
Strand | - |
Gene length (bp) | 855 |
Transcript length (bp) | 855 |
Coding sequence length (bp) | 855 |
Protein length (aa) | 285 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1934 | 0.14 | 0.0986 | 0.5801 | 0.1 | 0.0076 | 0.2189 | 0.4549 | 0.3481 | 0.0035 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 18 | 40 | 22 |
2 | 47 | 69 | 22 |
3 | 129 | 151 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3343 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|62 MSNIDMSSFRGIGMVVLQVLRAFTVITLAAVGASCWVLIIKVDKERGYFVFECAVHFFRSLLCLALIVSEFPVLE SVKGYFRRNWPVVSDQRGLSWLGVAMLALGCDMLGNLNRPAYDADKLGPHFSRLTLASSVLAITFGTVNIVCSLV WRDRGEGITCRDIRDNGSLADARRQSLPDYSSATYSNNPSSAATATTEKMRSRFASVFWKKAGGDKEKMKHNISG PFPVRQQDVERQATPPCDNDRLSPIVPGLKRPDTALHPMNTNTNGGRSSVYSEAHMSRF* |
Coding | >Hirsu2|62 ATGTCCAACATCGACATGAGCTCCTTTCGGGGCATCGGCATGGTGGTCCTCCAGGTCCTCCGAGCCTTCACCGTC ATCACGCTGGCCGCCGTCGGTGCCTCGTGCTGGGTCCTGATCATCAAGGTCGACAAGGAGCGCGGCTACTTCGTC TTCGAATGCGCCGTCCACTTCTTCCGATCGCTGCTGTGCCTCGCCCTCATCGTCTCCGAGTTCCCCGTGCTCGAG TCCGTCAAAGGCTACTTCCGCCGCAACTGGCCCGTCGTCTCGGACCAGCGCGGCCTCAGCTGGCTCGGCGTCGCC ATGCTGGCCCTCGGCTGCGACATGCTCGGCAACCTGAACCGCCCCGCCTACGACGCCGACAAGCTCGGCCCGCAC TTCTCCCGCCTCACGCTGGCCTCGTCCGTCCTGGCCATCACCTTCGGCACCGTCAACATCGTCTGCTCCCTCGTC TGGCGCGACCGCGGCGAGGGCATCACCTGCCGCGACATCCGCGACAACGGCTCGCTCGCCGACGCCCGCCGCCAG TCGCTGCCCGACTACTCCTCCGCCACCTACTCCAACAACCCGTCGTCGGCGGCGACGGCGACGACCGAGAAGATG CGGAGCCGGTTCGCCTCCGTGTTCTGGAAGAAGGCCGGCGGCGACAAGGAGAAGATGAAGCACAACATCAGCGGG CCCTTCCCCGTCCGCCAGCAGGACGTCGAGCGCCAGGCCACGCCGCCCTGCGACAACGACCGGCTGAGCCCCATC GTCCCGGGGCTCAAGCGGCCGGACACGGCCCTGCACCCCATGAACACGAACACGAACGGGGGCCGGAGCAGCGTC TACTCGGAGGCGCACATGTCTCGATTCTAA |
Transcript | >Hirsu2|62 ATGTCCAACATCGACATGAGCTCCTTTCGGGGCATCGGCATGGTGGTCCTCCAGGTCCTCCGAGCCTTCACCGTC ATCACGCTGGCCGCCGTCGGTGCCTCGTGCTGGGTCCTGATCATCAAGGTCGACAAGGAGCGCGGCTACTTCGTC TTCGAATGCGCCGTCCACTTCTTCCGATCGCTGCTGTGCCTCGCCCTCATCGTCTCCGAGTTCCCCGTGCTCGAG TCCGTCAAAGGCTACTTCCGCCGCAACTGGCCCGTCGTCTCGGACCAGCGCGGCCTCAGCTGGCTCGGCGTCGCC ATGCTGGCCCTCGGCTGCGACATGCTCGGCAACCTGAACCGCCCCGCCTACGACGCCGACAAGCTCGGCCCGCAC TTCTCCCGCCTCACGCTGGCCTCGTCCGTCCTGGCCATCACCTTCGGCACCGTCAACATCGTCTGCTCCCTCGTC TGGCGCGACCGCGGCGAGGGCATCACCTGCCGCGACATCCGCGACAACGGCTCGCTCGCCGACGCCCGCCGCCAG TCGCTGCCCGACTACTCCTCCGCCACCTACTCCAACAACCCGTCGTCGGCGGCGACGGCGACGACCGAGAAGATG CGGAGCCGGTTCGCCTCCGTGTTCTGGAAGAAGGCCGGCGGCGACAAGGAGAAGATGAAGCACAACATCAGCGGG CCCTTCCCCGTCCGCCAGCAGGACGTCGAGCGCCAGGCCACGCCGCCCTGCGACAACGACCGGCTGAGCCCCATC GTCCCGGGGCTCAAGCGGCCGGACACGGCCCTGCACCCCATGAACACGAACACGAACGGGGGCCGGAGCAGCGTC TACTCGGAGGCGCACATGTCTCGATTCTAA |
Gene | >Hirsu2|62 ATGTCCAACATCGACATGAGCTCCTTTCGGGGCATCGGCATGGTGGTCCTCCAGGTCCTCCGAGCCTTCACCGTC ATCACGCTGGCCGCCGTCGGTGCCTCGTGCTGGGTCCTGATCATCAAGGTCGACAAGGAGCGCGGCTACTTCGTC TTCGAATGCGCCGTCCACTTCTTCCGATCGCTGCTGTGCCTCGCCCTCATCGTCTCCGAGTTCCCCGTGCTCGAG TCCGTCAAAGGCTACTTCCGCCGCAACTGGCCCGTCGTCTCGGACCAGCGCGGCCTCAGCTGGCTCGGCGTCGCC ATGCTGGCCCTCGGCTGCGACATGCTCGGCAACCTGAACCGCCCCGCCTACGACGCCGACAAGCTCGGCCCGCAC TTCTCCCGCCTCACGCTGGCCTCGTCCGTCCTGGCCATCACCTTCGGCACCGTCAACATCGTCTGCTCCCTCGTC TGGCGCGACCGCGGCGAGGGCATCACCTGCCGCGACATCCGCGACAACGGCTCGCTCGCCGACGCCCGCCGCCAG TCGCTGCCCGACTACTCCTCCGCCACCTACTCCAACAACCCGTCGTCGGCGGCGACGGCGACGACCGAGAAGATG CGGAGCCGGTTCGCCTCCGTGTTCTGGAAGAAGGCCGGCGGCGACAAGGAGAAGATGAAGCACAACATCAGCGGG CCCTTCCCCGTCCGCCAGCAGGACGTCGAGCGCCAGGCCACGCCGCCCTGCGACAACGACCGGCTGAGCCCCATC GTCCCGGGGCTCAAGCGGCCGGACACGGCCCTGCACCCCATGAACACGAACACGAACGGGGGCCGGAGCAGCGTC TACTCGGAGGCGCACATGTCTCGATTCTAA |