© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|62 |
| Gene name | |
| Location | Contig_1006:5401..6256 |
| Strand | - |
| Gene length (bp) | 855 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide|Transmembrane domain | 0.1934 | 0.14 | 0.0986 | 0.5801 | 0.1 | 0.0076 | 0.2189 | 0.4549 | 0.3481 | 0.0035 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 18 | 40 | 22 |
| 2 | 47 | 69 | 22 |
| 3 | 129 | 151 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3343 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|62 MSNIDMSSFRGIGMVVLQVLRAFTVITLAAVGASCWVLIIKVDKERGYFVFECAVHFFRSLLCLALIVSEFPVLE SVKGYFRRNWPVVSDQRGLSWLGVAMLALGCDMLGNLNRPAYDADKLGPHFSRLTLASSVLAITFGTVNIVCSLV WRDRGEGITCRDIRDNGSLADARRQSLPDYSSATYSNNPSSAATATTEKMRSRFASVFWKKAGGDKEKMKHNISG PFPVRQQDVERQATPPCDNDRLSPIVPGLKRPDTALHPMNTNTNGGRSSVYSEAHMSRF* |
| Coding | >Hirsu2|62 ATGTCCAACATCGACATGAGCTCCTTTCGGGGCATCGGCATGGTGGTCCTCCAGGTCCTCCGAGCCTTCACCGTC ATCACGCTGGCCGCCGTCGGTGCCTCGTGCTGGGTCCTGATCATCAAGGTCGACAAGGAGCGCGGCTACTTCGTC TTCGAATGCGCCGTCCACTTCTTCCGATCGCTGCTGTGCCTCGCCCTCATCGTCTCCGAGTTCCCCGTGCTCGAG TCCGTCAAAGGCTACTTCCGCCGCAACTGGCCCGTCGTCTCGGACCAGCGCGGCCTCAGCTGGCTCGGCGTCGCC ATGCTGGCCCTCGGCTGCGACATGCTCGGCAACCTGAACCGCCCCGCCTACGACGCCGACAAGCTCGGCCCGCAC TTCTCCCGCCTCACGCTGGCCTCGTCCGTCCTGGCCATCACCTTCGGCACCGTCAACATCGTCTGCTCCCTCGTC TGGCGCGACCGCGGCGAGGGCATCACCTGCCGCGACATCCGCGACAACGGCTCGCTCGCCGACGCCCGCCGCCAG TCGCTGCCCGACTACTCCTCCGCCACCTACTCCAACAACCCGTCGTCGGCGGCGACGGCGACGACCGAGAAGATG CGGAGCCGGTTCGCCTCCGTGTTCTGGAAGAAGGCCGGCGGCGACAAGGAGAAGATGAAGCACAACATCAGCGGG CCCTTCCCCGTCCGCCAGCAGGACGTCGAGCGCCAGGCCACGCCGCCCTGCGACAACGACCGGCTGAGCCCCATC GTCCCGGGGCTCAAGCGGCCGGACACGGCCCTGCACCCCATGAACACGAACACGAACGGGGGCCGGAGCAGCGTC TACTCGGAGGCGCACATGTCTCGATTCTAA |
| Transcript | >Hirsu2|62 ATGTCCAACATCGACATGAGCTCCTTTCGGGGCATCGGCATGGTGGTCCTCCAGGTCCTCCGAGCCTTCACCGTC ATCACGCTGGCCGCCGTCGGTGCCTCGTGCTGGGTCCTGATCATCAAGGTCGACAAGGAGCGCGGCTACTTCGTC TTCGAATGCGCCGTCCACTTCTTCCGATCGCTGCTGTGCCTCGCCCTCATCGTCTCCGAGTTCCCCGTGCTCGAG TCCGTCAAAGGCTACTTCCGCCGCAACTGGCCCGTCGTCTCGGACCAGCGCGGCCTCAGCTGGCTCGGCGTCGCC ATGCTGGCCCTCGGCTGCGACATGCTCGGCAACCTGAACCGCCCCGCCTACGACGCCGACAAGCTCGGCCCGCAC TTCTCCCGCCTCACGCTGGCCTCGTCCGTCCTGGCCATCACCTTCGGCACCGTCAACATCGTCTGCTCCCTCGTC TGGCGCGACCGCGGCGAGGGCATCACCTGCCGCGACATCCGCGACAACGGCTCGCTCGCCGACGCCCGCCGCCAG TCGCTGCCCGACTACTCCTCCGCCACCTACTCCAACAACCCGTCGTCGGCGGCGACGGCGACGACCGAGAAGATG CGGAGCCGGTTCGCCTCCGTGTTCTGGAAGAAGGCCGGCGGCGACAAGGAGAAGATGAAGCACAACATCAGCGGG CCCTTCCCCGTCCGCCAGCAGGACGTCGAGCGCCAGGCCACGCCGCCCTGCGACAACGACCGGCTGAGCCCCATC GTCCCGGGGCTCAAGCGGCCGGACACGGCCCTGCACCCCATGAACACGAACACGAACGGGGGCCGGAGCAGCGTC TACTCGGAGGCGCACATGTCTCGATTCTAA |
| Gene | >Hirsu2|62 ATGTCCAACATCGACATGAGCTCCTTTCGGGGCATCGGCATGGTGGTCCTCCAGGTCCTCCGAGCCTTCACCGTC ATCACGCTGGCCGCCGTCGGTGCCTCGTGCTGGGTCCTGATCATCAAGGTCGACAAGGAGCGCGGCTACTTCGTC TTCGAATGCGCCGTCCACTTCTTCCGATCGCTGCTGTGCCTCGCCCTCATCGTCTCCGAGTTCCCCGTGCTCGAG TCCGTCAAAGGCTACTTCCGCCGCAACTGGCCCGTCGTCTCGGACCAGCGCGGCCTCAGCTGGCTCGGCGTCGCC ATGCTGGCCCTCGGCTGCGACATGCTCGGCAACCTGAACCGCCCCGCCTACGACGCCGACAAGCTCGGCCCGCAC TTCTCCCGCCTCACGCTGGCCTCGTCCGTCCTGGCCATCACCTTCGGCACCGTCAACATCGTCTGCTCCCTCGTC TGGCGCGACCGCGGCGAGGGCATCACCTGCCGCGACATCCGCGACAACGGCTCGCTCGCCGACGCCCGCCGCCAG TCGCTGCCCGACTACTCCTCCGCCACCTACTCCAACAACCCGTCGTCGGCGGCGACGGCGACGACCGAGAAGATG CGGAGCCGGTTCGCCTCCGTGTTCTGGAAGAAGGCCGGCGGCGACAAGGAGAAGATGAAGCACAACATCAGCGGG CCCTTCCCCGTCCGCCAGCAGGACGTCGAGCGCCAGGCCACGCCGCCCTGCGACAACGACCGGCTGAGCCCCATC GTCCCGGGGCTCAAGCGGCCGGACACGGCCCTGCACCCCATGAACACGAACACGAACGGGGGCCGGAGCAGCGTC TACTCGGAGGCGCACATGTCTCGATTCTAA |