© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6149 |
| Gene name | |
| Location | Contig_3116:193..898 |
| Strand | + |
| Gene length (bp) | 705 |
| Transcript length (bp) | 546 |
| Coding sequence length (bp) | 546 |
| Protein length (aa) | 182 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular|Endoplasmic reticulum | Signal peptide | 0.1692 | 0.1218 | 0.814 | 0.1558 | 0.1607 | 0.1347 | 0.6811 | 0.2343 | 0.3614 | 0.0225 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 31 | 0.999719 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3325 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6149 MASLAGLLPASRALALLLLLLLLLAPAPALSADGGATTSAEKDVPDWASNNALQLTLSTKPGLQFTTIPLTENLG LNESERTRGVVSIDGFLRPANVSNYNQIGAPDDVVYLSCDKPGGDNFITPDKMLNDLMARRPKAILLFSTSRNWC SLSSEDPLATPPRTRPSTTRAAAAATTRPSP* |
| Coding | >Hirsu2|6149 ATGGCCTCGCTGGCCGGCCTGCTCCCGGCCTCCCGCGCCCTCGCCCTGCTGCTGCTGCTGCTGCTGCTGCTCGCG CCCGCGCCCGCGCTGTCGGCCGATGGCGGCGCGACCACGTCGGCCGAGAAGGACGTGCCCGATTGGGCTTCCAAC AACGCCCTGCAGCTCACCCTCTCCACCAAGCCCGGCCTCCAGTTCACGACGATCCCGCTGACCGAGAACCTCGGC CTCAACGAGTCGGAGCGGACCCGTGGCGTCGTCAGCATCGACGGCTTCCTGCGGCCCGCCAACGTCTCCAACTAC AACCAGATCGGCGCCCCGGACGATGTCGTCTACCTCTCGTGCGACAAGCCGGGCGGCGACAACTTCATCACCCCC GACAAGATGCTCAACGACCTCATGGCCCGCCGCCCCAAGGCCATCCTGCTCTTCTCGACCAGCCGCAACTGGTGC TCGCTCAGCAGCGAGGACCCGCTGGCAACACCACCGAGGACCAGGCCGTCAACGACCCGGGCGGCGGCGGCGGCA ACAACTCGGCCGTCGCCATGA |
| Transcript | >Hirsu2|6149 ATGGCCTCGCTGGCCGGCCTGCTCCCGGCCTCCCGCGCCCTCGCCCTGCTGCTGCTGCTGCTGCTGCTGCTCGCG CCCGCGCCCGCGCTGTCGGCCGATGGCGGCGCGACCACGTCGGCCGAGAAGGACGTGCCCGATTGGGCTTCCAAC AACGCCCTGCAGCTCACCCTCTCCACCAAGCCCGGCCTCCAGTTCACGACGATCCCGCTGACCGAGAACCTCGGC CTCAACGAGTCGGAGCGGACCCGTGGCGTCGTCAGCATCGACGGCTTCCTGCGGCCCGCCAACGTCTCCAACTAC AACCAGATCGGCGCCCCGGACGATGTCGTCTACCTCTCGTGCGACAAGCCGGGCGGCGACAACTTCATCACCCCC GACAAGATGCTCAACGACCTCATGGCCCGCCGCCCCAAGGCCATCCTGCTCTTCTCGACCAGCCGCAACTGGTGC TCGCTCAGCAGCGAGGACCCGCTGGCAACACCACCGAGGACCAGGCCGTCAACGACCCGGGCGGCGGCGGCGGCA ACAACTCGGCCGTCGCCATGA |
| Gene | >Hirsu2|6149 ATGGCCTCGCTGGCCGGCCTGCTCCCGGCCTCCCGCGCCCTCGCCCTGCTGCTGCTGCTGCTGCTGCTGCTCGCG CCCGCGCCCGCGCTGTCGGCCGATGGCGGCGCGACCACGTCGGCCGAGAAGGACGTGCCCGATTGGGCTTCCAAC AACGCCCTGCAGCTCACCCTCTCCACCAAGCCCGGCCTCCAGTTCACGACGATCCCGCTGACCGAGAACCTCGGC CTCAACGAGTCGGAGCGGACCCGTGGCGTGAGTCGTCCCCCCGTCCTTGGCCGTTCTCCGTTGCTAATTCGCCCT CTGTCCAGGTCGTCAGCATCGACGGCTTCCTGCGGCCCGCCAACGTCTCCAACTACAACCAGATCGGCGCCCCGG ACGATGTCGTCTACCTCTCGTGCGACAAGCCGGGCGGCGACAACTTCATCACCCCCGACAAGATGCTCAACGACC TCATGGCCCGCCGCCCCAAGGCCATCCTGCTCTTCTCGACCAGCCGCAACTGGTGCTCGCTCAGCAGCGAGGACC CGCTGTCCTTCACCAGCATCCTGACCATGGCCGACGCCGGCGAGGCCAGCAACGTCCTCAGCTACCTCGGCGGCA ACGGCGGCAACAACGTCCGCGCCCTGATCCAGGGCAACACCACCGAGGACCAGGCCGTCAACGACCCGGGCGGCG GCGGCGGCAACAACTCGGCCGTCGCCATGA |