Protein ID | Hirsu2|6149 |
Gene name | |
Location | Contig_3116:193..898 |
Strand | + |
Gene length (bp) | 705 |
Transcript length (bp) | 546 |
Coding sequence length (bp) | 546 |
Protein length (aa) | 182 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular|Endoplasmic reticulum | Signal peptide | 0.1692 | 0.1218 | 0.814 | 0.1558 | 0.1607 | 0.1347 | 0.6811 | 0.2343 | 0.3614 | 0.0225 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 31 | 0.999719 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 10 | 32 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3325 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6149 MASLAGLLPASRALALLLLLLLLLAPAPALSADGGATTSAEKDVPDWASNNALQLTLSTKPGLQFTTIPLTENLG LNESERTRGVVSIDGFLRPANVSNYNQIGAPDDVVYLSCDKPGGDNFITPDKMLNDLMARRPKAILLFSTSRNWC SLSSEDPLATPPRTRPSTTRAAAAATTRPSP* |
Coding | >Hirsu2|6149 ATGGCCTCGCTGGCCGGCCTGCTCCCGGCCTCCCGCGCCCTCGCCCTGCTGCTGCTGCTGCTGCTGCTGCTCGCG CCCGCGCCCGCGCTGTCGGCCGATGGCGGCGCGACCACGTCGGCCGAGAAGGACGTGCCCGATTGGGCTTCCAAC AACGCCCTGCAGCTCACCCTCTCCACCAAGCCCGGCCTCCAGTTCACGACGATCCCGCTGACCGAGAACCTCGGC CTCAACGAGTCGGAGCGGACCCGTGGCGTCGTCAGCATCGACGGCTTCCTGCGGCCCGCCAACGTCTCCAACTAC AACCAGATCGGCGCCCCGGACGATGTCGTCTACCTCTCGTGCGACAAGCCGGGCGGCGACAACTTCATCACCCCC GACAAGATGCTCAACGACCTCATGGCCCGCCGCCCCAAGGCCATCCTGCTCTTCTCGACCAGCCGCAACTGGTGC TCGCTCAGCAGCGAGGACCCGCTGGCAACACCACCGAGGACCAGGCCGTCAACGACCCGGGCGGCGGCGGCGGCA ACAACTCGGCCGTCGCCATGA |
Transcript | >Hirsu2|6149 ATGGCCTCGCTGGCCGGCCTGCTCCCGGCCTCCCGCGCCCTCGCCCTGCTGCTGCTGCTGCTGCTGCTGCTCGCG CCCGCGCCCGCGCTGTCGGCCGATGGCGGCGCGACCACGTCGGCCGAGAAGGACGTGCCCGATTGGGCTTCCAAC AACGCCCTGCAGCTCACCCTCTCCACCAAGCCCGGCCTCCAGTTCACGACGATCCCGCTGACCGAGAACCTCGGC CTCAACGAGTCGGAGCGGACCCGTGGCGTCGTCAGCATCGACGGCTTCCTGCGGCCCGCCAACGTCTCCAACTAC AACCAGATCGGCGCCCCGGACGATGTCGTCTACCTCTCGTGCGACAAGCCGGGCGGCGACAACTTCATCACCCCC GACAAGATGCTCAACGACCTCATGGCCCGCCGCCCCAAGGCCATCCTGCTCTTCTCGACCAGCCGCAACTGGTGC TCGCTCAGCAGCGAGGACCCGCTGGCAACACCACCGAGGACCAGGCCGTCAACGACCCGGGCGGCGGCGGCGGCA ACAACTCGGCCGTCGCCATGA |
Gene | >Hirsu2|6149 ATGGCCTCGCTGGCCGGCCTGCTCCCGGCCTCCCGCGCCCTCGCCCTGCTGCTGCTGCTGCTGCTGCTGCTCGCG CCCGCGCCCGCGCTGTCGGCCGATGGCGGCGCGACCACGTCGGCCGAGAAGGACGTGCCCGATTGGGCTTCCAAC AACGCCCTGCAGCTCACCCTCTCCACCAAGCCCGGCCTCCAGTTCACGACGATCCCGCTGACCGAGAACCTCGGC CTCAACGAGTCGGAGCGGACCCGTGGCGTGAGTCGTCCCCCCGTCCTTGGCCGTTCTCCGTTGCTAATTCGCCCT CTGTCCAGGTCGTCAGCATCGACGGCTTCCTGCGGCCCGCCAACGTCTCCAACTACAACCAGATCGGCGCCCCGG ACGATGTCGTCTACCTCTCGTGCGACAAGCCGGGCGGCGACAACTTCATCACCCCCGACAAGATGCTCAACGACC TCATGGCCCGCCGCCCCAAGGCCATCCTGCTCTTCTCGACCAGCCGCAACTGGTGCTCGCTCAGCAGCGAGGACC CGCTGTCCTTCACCAGCATCCTGACCATGGCCGACGCCGGCGAGGCCAGCAACGTCCTCAGCTACCTCGGCGGCA ACGGCGGCAACAACGTCCGCGCCCTGATCCAGGGCAACACCACCGAGGACCAGGCCGTCAACGACCCGGGCGGCG GCGGCGGCAACAACTCGGCCGTCGCCATGA |