© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6135 |
| Gene name | |
| Location | Contig_3104:282..1011 |
| Strand | + |
| Gene length (bp) | 729 |
| Transcript length (bp) | 675 |
| Coding sequence length (bp) | 675 |
| Protein length (aa) | 225 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04511 | DER1 | Der1-like family | 2.0E-49 | 15 | 204 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8BNI4|DERL2_MOUSE | Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2 | 8 | 212 | 6.0E-53 |
| sp|Q5RC74|DERL2_PONAB | Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1 | 8 | 212 | 1.0E-52 |
| sp|Q9GZP9|DERL2_HUMAN | Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1 | 8 | 212 | 1.0E-52 |
| sp|Q96Q80|DERL3_HUMAN | Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2 | 8 | 217 | 2.0E-49 |
| sp|Q9D8K3|DERL3_MOUSE | Derlin-3 OS=Mus musculus GN=Derl3 PE=1 SV=1 | 1 | 220 | 4.0E-47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8BNI4|DERL2_MOUSE | Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2 | 8 | 212 | 6.0E-53 |
| sp|Q5RC74|DERL2_PONAB | Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1 | 8 | 212 | 1.0E-52 |
| sp|Q9GZP9|DERL2_HUMAN | Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1 | 8 | 212 | 1.0E-52 |
| sp|Q96Q80|DERL3_HUMAN | Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2 | 8 | 217 | 2.0E-49 |
| sp|Q9D8K3|DERL3_MOUSE | Derlin-3 OS=Mus musculus GN=Derl3 PE=1 SV=1 | 1 | 220 | 4.0E-47 |
| sp|Q0P5E4|DERL3_BOVIN | Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1 | 8 | 213 | 1.0E-46 |
| sp|Q9ZS88|DER22_ARATH | Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1 | 8 | 211 | 5.0E-45 |
| sp|Q4G2J4|DER21_MAIZE | Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2 | 8 | 211 | 2.0E-44 |
| sp|Q851X7|DERL2_ORYSJ | Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1 | 8 | 211 | 5.0E-44 |
| sp|Q4G2J3|DER22_MAIZE | Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1 | 8 | 211 | 5.0E-44 |
| sp|Q8VZ96|DER21_ARATH | Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=3 | 8 | 211 | 2.0E-42 |
| sp|Q54NN1|DERL2_DICDI | Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1 | 7 | 221 | 2.0E-42 |
| sp|Q21997|DERL2_CAEEL | Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2 | 1 | 212 | 4.0E-37 |
| sp|Q4G2J5|DER12_MAIZE | Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1 | 11 | 210 | 1.0E-31 |
| sp|Q4G2J6|DER11_MAIZE | Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2 | 11 | 210 | 2.0E-31 |
| sp|Q06397|DERL1_ORYSJ | Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2 | 11 | 210 | 2.0E-28 |
| sp|O94458|YFFH_SCHPO | Uncharacterized derlin-like protein C1687.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1687.17c PE=3 SV=2 | 14 | 189 | 3.0E-28 |
| sp|Q8VZU9|DERL1_ARATH | Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1 | 14 | 210 | 1.0E-24 |
| sp|Q9VQ57|DERL1_DROME | Derlin-1 OS=Drosophila melanogaster GN=Der-1 PE=2 SV=1 | 1 | 210 | 2.0E-22 |
| sp|Q71SS4|DERL1_BOVIN | Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1 | 11 | 209 | 5.0E-22 |
| sp|Q9BUN8|DERL1_HUMAN | Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1 | 11 | 209 | 6.0E-22 |
| sp|Q5R9W3|DERL1_PONAB | Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1 | 11 | 209 | 1.0E-21 |
| sp|Q99J56|DERL1_MOUSE | Derlin-1 OS=Mus musculus GN=Derl1 PE=1 SV=1 | 11 | 209 | 4.0E-21 |
| sp|Q93561|DERL1_CAEEL | Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=2 SV=1 | 6 | 210 | 4.0E-19 |
| sp|Q54IC9|DERL1_DICDI | Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3 SV=1 | 1 | 220 | 1.0E-16 |
| sp|Q9Y7Y0|YGR8_SCHPO | Uncharacterized derlin-like protein C365.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC365.08c PE=3 SV=1 | 8 | 200 | 1.0E-15 |
| sp|P38307|DER1_YEAST | Degradation in the endoplasmic reticulum protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DER1 PE=1 SV=3 | 14 | 209 | 3.0E-12 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 58 | 80 | 22 |
| 3 | 100 | 122 | 22 |
| 4 | 142 | 164 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6135 MDGGRLPLEAWFWEMPTCTRWWTAATVLTSALVQCHIVTPFQLFYSFRAVFVKSQYWRLITTFLYFGPFSLDLLF HVYFLQRYARLLEDSSGRSSAHFSWLLLYAMASLITLSPLVSMPFLGHPLSSTLVYIWSRRNPDTRLSFLGLVVF AAPYLPWVLMGFSLFMHGTVPRDEIMGVVIGHIWYFFTDVYPPLHNGSRPLDPPAWWRRLFDGLARENTDSGMT* |
| Coding | >Hirsu2|6135 ATGGACGGCGGACGCTTACCTTTGGAGGCTTGGTTCTGGGAGATGCCAACATGCACCCGCTGGTGGACTGCTGCC ACTGTCTTAACCAGCGCCTTGGTCCAATGTCACATTGTGACCCCATTCCAACTCTTTTACAGCTTTCGCGCCGTG TTTGTAAAGTCCCAGTACTGGAGATTGATAACGACTTTTCTCTATTTTGGTCCCTTCTCACTCGATCTTCTGTTC CATGTTTACTTCTTACAACGCTACGCCCGTCTACTCGAAGACTCATCGGGCCGCTCTTCGGCTCACTTCTCGTGG TTGCTGCTGTATGCTATGGCAAGCCTTATTACCTTGTCGCCGCTTGTTTCCATGCCGTTTCTTGGTCATCCGTTA TCATCGACGCTGGTTTATATCTGGTCCCGCCGGAACCCAGACACAAGGTTGAGCTTTTTGGGCCTTGTTGTTTTT GCAGCTCCTTACCTACCCTGGGTTCTCATGGGATTCAGTCTGTTCATGCATGGAACCGTTCCCAGAGACGAAATC ATGGGCGTCGTAATCGGACACATATGGTACTTCTTCACGGATGTCTACCCGCCGCTGCATAATGGCTCCCGGCCT CTTGACCCCCCCGCCTGGTGGAGACGACTGTTTGACGGCTTGGCCCGTGAGAATACGGACAGCGGCATGACCTAG |
| Transcript | >Hirsu2|6135 ATGGACGGCGGACGCTTACCTTTGGAGGCTTGGTTCTGGGAGATGCCAACATGCACCCGCTGGTGGACTGCTGCC ACTGTCTTAACCAGCGCCTTGGTCCAATGTCACATTGTGACCCCATTCCAACTCTTTTACAGCTTTCGCGCCGTG TTTGTAAAGTCCCAGTACTGGAGATTGATAACGACTTTTCTCTATTTTGGTCCCTTCTCACTCGATCTTCTGTTC CATGTTTACTTCTTACAACGCTACGCCCGTCTACTCGAAGACTCATCGGGCCGCTCTTCGGCTCACTTCTCGTGG TTGCTGCTGTATGCTATGGCAAGCCTTATTACCTTGTCGCCGCTTGTTTCCATGCCGTTTCTTGGTCATCCGTTA TCATCGACGCTGGTTTATATCTGGTCCCGCCGGAACCCAGACACAAGGTTGAGCTTTTTGGGCCTTGTTGTTTTT GCAGCTCCTTACCTACCCTGGGTTCTCATGGGATTCAGTCTGTTCATGCATGGAACCGTTCCCAGAGACGAAATC ATGGGCGTCGTAATCGGACACATATGGTACTTCTTCACGGATGTCTACCCGCCGCTGCATAATGGCTCCCGGCCT CTTGACCCCCCCGCCTGGTGGAGACGACTGTTTGACGGCTTGGCCCGTGAGAATACGGACAGCGGCATGACCTAG |
| Gene | >Hirsu2|6135 ATGGACGGCGGACGCTTACCTTTGGAGGCTTGGTTCTGGGAGATGCCAACATGCACCCGCTGGTGGACTGCTGCC ACTGTCTTAACCAGCGCCTTGGTCCAATGTCACATTGTGACCCCATTCCAACTCTTTTACAGCTTTCGCGCCGTG TTTGTAAAGTCCCAGGTTGGTTGACTCTGCTACTGTCCACTTTTCGCTCCTATGCTGATTATCTTTCAGTACTGG AGATTGATAACGACTTTTCTCTATTTTGGTCCCTTCTCACTCGATCTTCTGTTCCATGTTTACTTCTTACAACGC TACGCCCGTCTACTCGAAGACTCATCGGGCCGCTCTTCGGCTCACTTCTCGTGGTTGCTGCTGTATGCTATGGCA AGCCTTATTACCTTGTCGCCGCTTGTTTCCATGCCGTTTCTTGGTCATCCGTTATCATCGACGCTGGTTTATATC TGGTCCCGCCGGAACCCAGACACAAGGTTGAGCTTTTTGGGCCTTGTTGTTTTTGCAGCTCCTTACCTACCCTGG GTTCTCATGGGATTCAGTCTGTTCATGCATGGAACCGTTCCCAGAGACGAAATCATGGGCGTCGTAATCGGACAC ATATGGTACTTCTTCACGGATGTCTACCCGCCGCTGCATAATGGCTCCCGGCCTCTTGACCCCCCCGCCTGGTGG AGACGACTGTTTGACGGCTTGGCCCGTGAGAATACGGACAGCGGCATGACCTAG |