Protein ID | Hirsu2|6111 |
Gene name | |
Location | Contig_31:29335..29653 |
Strand | + |
Gene length (bp) | 318 |
Transcript length (bp) | 318 |
Coding sequence length (bp) | 318 |
Protein length (aa) | 106 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF16541 | AltA1 | Alternaria alternata allergen 1 | 9.7E-08 | 27 | 103 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0821 | 0.0514 | 0.9673 | 0.0772 | 0.0967 | 0.0199 | 0.0525 | 0.0869 | 0.0408 | 0.0067 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 19 | 0.998986 |
Orthofinder run ID | 4 |
Orthogroup | 910 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6111 MRAIAIASSLAALAAAAAAERTENIRISKFLVRKNAAPDGTTIRVVDFKLDGDDAHGLGCTVQAPAYYPKPSEVS TCGSSKYRFALHPGNDTEFSLRIYHETGLA* |
Coding | >Hirsu2|6111 ATGCGCGCCATCGCCATCGCCAGCAGCCTCGCCGCCCTCGCCGCCGCCGCCGCGGCCGAGCGGACGGAGAACATC CGGATCAGCAAGTTCCTGGTCCGCAAGAACGCCGCGCCCGACGGTACCACCATCCGCGTCGTCGACTTCAAGCTC GACGGTGACGATGCCCACGGCCTTGGCTGCACGGTCCAGGCCCCGGCCTACTACCCCAAGCCGTCCGAGGTCAGC ACGTGCGGCAGCTCCAAGTACAGGTTCGCCCTTCATCCCGGCAACGACACCGAGTTCAGCTTGCGCATCTATCAT GAGACGGGCTTAGCGTAA |
Transcript | >Hirsu2|6111 ATGCGCGCCATCGCCATCGCCAGCAGCCTCGCCGCCCTCGCCGCCGCCGCCGCGGCCGAGCGGACGGAGAACATC CGGATCAGCAAGTTCCTGGTCCGCAAGAACGCCGCGCCCGACGGTACCACCATCCGCGTCGTCGACTTCAAGCTC GACGGTGACGATGCCCACGGCCTTGGCTGCACGGTCCAGGCCCCGGCCTACTACCCCAAGCCGTCCGAGGTCAGC ACGTGCGGCAGCTCCAAGTACAGGTTCGCCCTTCATCCCGGCAACGACACCGAGTTCAGCTTGCGCATCTATCAT GAGACGGGCTTAGCGTAA |
Gene | >Hirsu2|6111 ATGCGCGCCATCGCCATCGCCAGCAGCCTCGCCGCCCTCGCCGCCGCCGCCGCGGCCGAGCGGACGGAGAACATC CGGATCAGCAAGTTCCTGGTCCGCAAGAACGCCGCGCCCGACGGTACCACCATCCGCGTCGTCGACTTCAAGCTC GACGGTGACGATGCCCACGGCCTTGGCTGCACGGTCCAGGCCCCGGCCTACTACCCCAAGCCGTCCGAGGTCAGC ACGTGCGGCAGCTCCAAGTACAGGTTCGCCCTTCATCCCGGCAACGACACCGAGTTCAGCTTGCGCATCTATCAT GAGACGGGCTTAGCGTAA |