© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6104 |
| Gene name | |
| Location | Contig_3099:627..1023 |
| Strand | - |
| Gene length (bp) | 396 |
| Transcript length (bp) | 396 |
| Coding sequence length (bp) | 396 |
| Protein length (aa) | 132 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04511 | DER1 | Der1-like family | 7.1E-08 | 3 | 77 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5R9W3|DERL1_PONAB | Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1 | 3 | 80 | 2.0E-06 |
| sp|Q9BUN8|DERL1_HUMAN | Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1 | 3 | 80 | 2.0E-06 |
| sp|Q71SS4|DERL1_BOVIN | Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1 | 3 | 80 | 2.0E-06 |
| sp|Q93561|DERL1_CAEEL | Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=2 SV=1 | 3 | 115 | 6.0E-06 |
| sp|Q99J56|DERL1_MOUSE | Derlin-1 OS=Mus musculus GN=Derl1 PE=1 SV=1 | 3 | 80 | 6.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6104 MSYTATQEQRGMKVNYMFITIPAQLSPYAMLAFNLLFPGGAMNMLLQVQGLLAGHLYEFLTRIWPEYGGGRNLIP TPAFMTTVVRTAGTVQARLAAMLGMQGAPAGPGGAGSQRGPLPDSWRTRGPGHRLG* |
| Coding | >Hirsu2|6104 ATGTCGTACACGGCGACGCAGGAACAGCGGGGGATGAAGGTCAACTACATGTTCATCACCATCCCCGCCCAGCTG TCGCCCTACGCCATGCTGGCCTTCAACCTCCTCTTCCCCGGCGGCGCCATGAACATGCTGCTGCAGGTCCAAGGC CTGCTCGCCGGCCATCTGTACGAGTTCCTGACCCGGATTTGGCCCGAGTACGGAGGGGGCAGGAACCTGATTCCC ACGCCTGCCTTCATGACGACGGTGGTGCGGACTGCCGGAACGGTGCAGGCAAGGTTGGCGGCAATGCTGGGAATG CAGGGCGCGCCGGCCGGTCCAGGAGGTGCTGGGTCCCAGAGAGGGCCGCTGCCCGACTCGTGGCGAACTCGGGGT CCTGGGCACCGTCTGGGATGA |
| Transcript | >Hirsu2|6104 ATGTCGTACACGGCGACGCAGGAACAGCGGGGGATGAAGGTCAACTACATGTTCATCACCATCCCCGCCCAGCTG TCGCCCTACGCCATGCTGGCCTTCAACCTCCTCTTCCCCGGCGGCGCCATGAACATGCTGCTGCAGGTCCAAGGC CTGCTCGCCGGCCATCTGTACGAGTTCCTGACCCGGATTTGGCCCGAGTACGGAGGGGGCAGGAACCTGATTCCC ACGCCTGCCTTCATGACGACGGTGGTGCGGACTGCCGGAACGGTGCAGGCAAGGTTGGCGGCAATGCTGGGAATG CAGGGCGCGCCGGCCGGTCCAGGAGGTGCTGGGTCCCAGAGAGGGCCGCTGCCCGACTCGTGGCGAACTCGGGGT CCTGGGCACCGTCTGGGATGA |
| Gene | >Hirsu2|6104 ATGTCGTACACGGCGACGCAGGAACAGCGGGGGATGAAGGTCAACTACATGTTCATCACCATCCCCGCCCAGCTG TCGCCCTACGCCATGCTGGCCTTCAACCTCCTCTTCCCCGGCGGCGCCATGAACATGCTGCTGCAGGTCCAAGGC CTGCTCGCCGGCCATCTGTACGAGTTCCTGACCCGGATTTGGCCCGAGTACGGAGGGGGCAGGAACCTGATTCCC ACGCCTGCCTTCATGACGACGGTGGTGCGGACTGCCGGAACGGTGCAGGCAAGGTTGGCGGCAATGCTGGGAATG CAGGGCGCGCCGGCCGGTCCAGGAGGTGCTGGGTCCCAGAGAGGGCCGCTGCCCGACTCGTGGCGAACTCGGGGT CCTGGGCACCGTCTGGGATGA |