Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|610
Gene name
LocationContig_112:35647..37187
Strand+
Gene length (bp)1540
Transcript length (bp)1350
Coding sequence length (bp)1350
Protein length (aa) 450

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04791 LMBR1 LMBR1-like membrane protein 9.6E-92 14 438

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7ZYA0|LMBD2_XENLA LMBR1 domain-containing protein 2 OS=Xenopus laevis GN=lmbrd2 PE=2 SV=1 67 382 1.0E-22
sp|Q54TM2|LMD2B_DICDI LMBR1 domain-containing protein 2 homolog B OS=Dictyostelium discoideum GN=DDB_G0281669 PE=3 SV=1 8 437 5.0E-22
sp|O94599|YC8B_SCHPO LIMR family protein C622.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC622.11 PE=3 SV=1 49 220 3.0E-19
sp|Q6P4P2|LMD2B_DANRE LMBR1 domain-containing protein 2-B OS=Danio rerio GN=lmbrd2b PE=2 SV=1 21 393 7.0E-15
sp|Q8C561|LMBD2_MOUSE LMBR1 domain-containing protein 2 OS=Mus musculus GN=Lmbrd2 PE=1 SV=1 82 393 6.0E-14
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Swissprot ID Swissprot Description Start End E-value
sp|Q7ZYA0|LMBD2_XENLA LMBR1 domain-containing protein 2 OS=Xenopus laevis GN=lmbrd2 PE=2 SV=1 67 382 1.0E-22
sp|Q54TM2|LMD2B_DICDI LMBR1 domain-containing protein 2 homolog B OS=Dictyostelium discoideum GN=DDB_G0281669 PE=3 SV=1 8 437 5.0E-22
sp|O94599|YC8B_SCHPO LIMR family protein C622.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC622.11 PE=3 SV=1 49 220 3.0E-19
sp|Q6P4P2|LMD2B_DANRE LMBR1 domain-containing protein 2-B OS=Danio rerio GN=lmbrd2b PE=2 SV=1 21 393 7.0E-15
sp|Q8C561|LMBD2_MOUSE LMBR1 domain-containing protein 2 OS=Mus musculus GN=Lmbrd2 PE=1 SV=1 82 393 6.0E-14
sp|Q54Q92|LMD2A_DICDI LMBR1 domain-containing protein 2 homolog A OS=Dictyostelium discoideum GN=DDB_G0284019 PE=3 SV=1 92 383 7.0E-14
sp|Q8MRQ4|LMBD2_DROME LMBR1 domain-containing protein 2 homolog OS=Drosophila melanogaster GN=CG8135 PE=2 SV=2 83 436 2.0E-13
sp|Q5F3F5|LMBD2_CHICK LMBR1 domain-containing protein 2 OS=Gallus gallus GN=LMBRD2 PE=2 SV=1 82 394 3.0E-13
sp|Q29BL9|LMBD2_DROPS LMBR1 domain-containing protein 2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA20843 PE=3 SV=1 83 436 3.0E-12
sp|Q68DH5|LMBD2_HUMAN LMBR1 domain-containing protein 2 OS=Homo sapiens GN=LMBRD2 PE=2 SV=1 82 393 5.0E-12
sp|Q61ZW5|LMBD2_CAEBR LMBR1 domain-containing protein 2 homolog OS=Caenorhabditis briggsae GN=CBG02934 PE=3 SV=1 21 325 2.0E-10
sp|Q18695|LMBD2_CAEEL LMBR1 domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=C47G2.4 PE=3 SV=1 21 309 5.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 43 65 22
3 89 111 22
4 132 154 22
5 164 186 22
6 362 384 22
7 410 432 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|610
MPHVTSASAPVGSILFCLAALLVISLVVLLILRHYLPLRSTPAFYLVPIFFALWLPSIVVLLVPVDLASSAATDD
EATRGIWLPQRVVLVSWRITYWLTFVLTWFILPILAEYSDAGYRDPNDRLRYSLRQNAQFYAILALAGIAGLVYI
AVVYKFTFEYLKALVMALSYCWGLVLAIYLMGHGLVSIPRRLIRSARLSGSIMRLYTRAPRAYERMQDSLVALEE
VEAQVSELGRRKVGTAADFRDWIEELQESVEVAPAQLAQSGARGPGPHDRTVPTVITDKFLADLTRRLDRARHAR
SRYVDEWNGLVQEAMETQAILDSAGSKRLELGGVSPHAGVWARTTVLSPYARYICHFHVLPYARLALGLLLALAS
VCILWSELVRYPLPALSVVRLSVIHHWVGDKAQVGFAGQTIAALWICYMCAAALTSVTEVKVWPSCASRSPTTS*
Coding >Hirsu2|610
ATGCCTCACGTCACGAGCGCCTCGGCGCCCGTCGGCTCCATCCTCTTCTGCCTTGCCGCCCTGCTCGTCATCTCG
CTCGTAGTGCTGCTCATCCTCCGGCACTACCTCCCTCTGCGCTCGACGCCCGCCTTCTACCTCGTCCCCATCTTC
TTCGCCCTCTGGCTCCCGTCCATCGTCGTCCTGCTCGTCCCCGTGGACCTCGCCTCGAGCGCTGCCACCGACGAC
GAGGCCACTCGCGGCATATGGCTTCCGCAACGTGTCGTCTTGGTCTCGTGGAGGATCACGTACTGGCTGACATTC
GTCCTTACTTGGTTCATACTCCCGATCCTCGCCGAGTACTCCGACGCCGGTTACCGCGACCCCAACGACAGGCTC
CGATATTCGCTCCGACAAAATGCGCAGTTCTACGCGATACTGGCCCTCGCCGGCATCGCCGGCCTGGTCTACATC
GCCGTCGTCTACAAGTTCACGTTTGAATACCTCAAGGCCCTCGTCATGGCGCTCTCGTACTGCTGGGGCCTGGTG
CTCGCCATCTACCTCATGGGCCACGGGCTGGTGTCGATCCCGAGGCGGCTGATCCGCAGCGCCAGGCTCAGCGGA
AGCATCATGCGCCTCTACACCAGAGCGCCCCGGGCCTACGAGCGGATGCAGGACTCGCTCGTCGCCCTCGAGGAG
GTCGAGGCCCAGGTGTCGGAGCTGGGCCGGCGCAAGGTCGGCACCGCGGCCGACTTCCGGGACTGGATAGAGGAG
CTGCAAGAGTCGGTCGAGGTGGCGCCCGCGCAGCTCGCGCAGTCGGGCGCCCGCGGCCCGGGCCCTCACGACCGC
ACCGTCCCGACCGTCATCACGGACAAGTTCCTGGCGGACCTGACGCGGAGGCTCGACCGCGCGCGCCACGCGAGG
TCCCGGTACGTCGACGAATGGAACGGCCTGGTGCAGGAGGCGATGGAGACGCAGGCGATCCTCGACTCGGCCGGA
TCCAAGAGGCTCGAGTTGGGCGGCGTCTCGCCCCACGCCGGCGTCTGGGCCAGGACGACGGTCCTGTCGCCGTAC
GCCCGGTACATCTGCCACTTCCACGTGCTGCCGTACGCGCGCCTGGCGCTCGGCCTGTTGCTGGCGCTCGCGTCG
GTCTGCATCCTGTGGTCGGAGCTGGTGCGGTACCCGCTGCCGGCGCTGTCCGTCGTCCGGCTCAGCGTCATCCAC
CACTGGGTGGGCGACAAGGCGCAGGTCGGCTTCGCCGGGCAGACGATCGCGGCGCTGTGGATCTGCTACATGTGC
GCGGCGGCGCTGACGTCGGTGACCGAGGTCAAGGTGTGGCCAAGCTGTGCATCCCGCTCTCCTACAACTTCATGA
Transcript >Hirsu2|610
ATGCCTCACGTCACGAGCGCCTCGGCGCCCGTCGGCTCCATCCTCTTCTGCCTTGCCGCCCTGCTCGTCATCTCG
CTCGTAGTGCTGCTCATCCTCCGGCACTACCTCCCTCTGCGCTCGACGCCCGCCTTCTACCTCGTCCCCATCTTC
TTCGCCCTCTGGCTCCCGTCCATCGTCGTCCTGCTCGTCCCCGTGGACCTCGCCTCGAGCGCTGCCACCGACGAC
GAGGCCACTCGCGGCATATGGCTTCCGCAACGTGTCGTCTTGGTCTCGTGGAGGATCACGTACTGGCTGACATTC
GTCCTTACTTGGTTCATACTCCCGATCCTCGCCGAGTACTCCGACGCCGGTTACCGCGACCCCAACGACAGGCTC
CGATATTCGCTCCGACAAAATGCGCAGTTCTACGCGATACTGGCCCTCGCCGGCATCGCCGGCCTGGTCTACATC
GCCGTCGTCTACAAGTTCACGTTTGAATACCTCAAGGCCCTCGTCATGGCGCTCTCGTACTGCTGGGGCCTGGTG
CTCGCCATCTACCTCATGGGCCACGGGCTGGTGTCGATCCCGAGGCGGCTGATCCGCAGCGCCAGGCTCAGCGGA
AGCATCATGCGCCTCTACACCAGAGCGCCCCGGGCCTACGAGCGGATGCAGGACTCGCTCGTCGCCCTCGAGGAG
GTCGAGGCCCAGGTGTCGGAGCTGGGCCGGCGCAAGGTCGGCACCGCGGCCGACTTCCGGGACTGGATAGAGGAG
CTGCAAGAGTCGGTCGAGGTGGCGCCCGCGCAGCTCGCGCAGTCGGGCGCCCGCGGCCCGGGCCCTCACGACCGC
ACCGTCCCGACCGTCATCACGGACAAGTTCCTGGCGGACCTGACGCGGAGGCTCGACCGCGCGCGCCACGCGAGG
TCCCGGTACGTCGACGAATGGAACGGCCTGGTGCAGGAGGCGATGGAGACGCAGGCGATCCTCGACTCGGCCGGA
TCCAAGAGGCTCGAGTTGGGCGGCGTCTCGCCCCACGCCGGCGTCTGGGCCAGGACGACGGTCCTGTCGCCGTAC
GCCCGGTACATCTGCCACTTCCACGTGCTGCCGTACGCGCGCCTGGCGCTCGGCCTGTTGCTGGCGCTCGCGTCG
GTCTGCATCCTGTGGTCGGAGCTGGTGCGGTACCCGCTGCCGGCGCTGTCCGTCGTCCGGCTCAGCGTCATCCAC
CACTGGGTGGGCGACAAGGCGCAGGTCGGCTTCGCCGGGCAGACGATCGCGGCGCTGTGGATCTGCTACATGTGC
GCGGCGGCGCTGACGTCGGTGACCGAGGTCAAGGTGTGGCCAAGCTGTGCATCCCGCTCTCCTACAACTTCATGA
Gene >Hirsu2|610
ATGCCTCACGTCACGAGCGCCTCGGCGCCCGTCGGCTCCATCCTCTTCTGCCTTGCCGCCCTGCTCGTCATCTCG
CTCGTAGTGCTGCTCATCCTCCGGCACTACCTCCCTCTGCGCTCGACGCCCGCCTTCTACCTCGTCCCCATCTTC
TTCGCCCTCTGGCTCCCGTCCATCGTCGTCCTGCTCGTCCCCGTGGACCTCGCCTCGAGCGCTGCCACCGACGAC
GAGGCCACTCGCGGCATATGGCTTCCGCAACGTGTCGTCTTGGTCTCGTGGAGGATCACGTACTGGCTGACATTC
GTCCTTACTTGGTGCGCGCACGCCAGACCGGGCCCTCTCCTTCACCTCTTCNNCCTTCCCCCCTTCCCCCCCCCC
CCCCCCCCGATTTTTTTTTCTTTTTCGCATTCGGCCGAAATCTGATTCTGGTGCGACAGGTTCATACTCCCGATC
CTCGCCGAGTACTCCGACGCCGGTTACCGCGACCCCAACGACAGGCTCCGATATTCGCTCCGACAAAATGCGCAG
TTCTACGCGATACTGGCCCTCGCCGGCATCGCCGGCCTGGTCTACATCGCCGTCGTCTACAAGTTCACGTTTGAA
TACCTCAAGGCCCTCGTCATGGCGCTCTCGTACTGCTGGGGCCTGGTGCTCGCCATCTACCTCATGGGCCACGGG
CTGGTGTCGATCCCGAGGCGGCTGATCCGCAGCGCCAGGCTCAGCGGAAGCATCATGCGCCTCTACACCAGAGCG
CCCCGGGCCTACGAGCGGATGCAGGACTCGCTCGTCGCCCTCGAGGAGGTCGAGGCCCAGGTGTCGGAGCTGGGC
CGGCGCAAGGTCGGCACCGCGGCCGACTTCCGGGACTGGATAGAGGAGCTGCAAGAGTCGGTCGAGGTGGCGCCC
GCGCAGCTCGCGCAGTCGGGCGCCCGCGGCCCGGGCCCTCACGACCGCACCGTCCCGACCGTCATCACGGACAAG
TTCCTGGCGGACCTGACGCGGAGGCTCGACCGCGCGCGCCACGCGAGGTCCCGGTACGTCGACGAATGGAACGGC
CTGGTGCAGGAGGCGATGGAGACGCAGGCGATCCTCGACTCGGCCGGATCCAAGAGGCTCGAGTTGGGCGGCGTC
TCGCCCCACGCCGGCGTCTGGGCCAGGACGACGGTCCTGTCGCCGTACGCCCGGTACATCTGCCACTTCCACGTG
CTGCCGTACGCGCGCCTGGCGCTCGGCCTGTTGCTGGCGCTCGCGTCGGTCTGCATCCTGTGGTCGGAGCTGGTG
CGGTACCCGCTGCCGGCGCTGTCCGTCGTCCGGCTCAGCGTCATCCACCACTGGGTGGGCGACAAGGCGCAGGTC
GGCTTCGCCGGGCAGACGATCGCGGCGCTGTGGATCTGCTACATGTGCGCGGCGGCGCTGACGTCGGTGACCGAG
GTCAAGGTGTGGCGCGGGCGGGCGCTGGTCCGGCGCAACACGGCGCACGAGTCGGCCTTTTGGTACGCGTCGCAG
GTGGCCAAGCTGTGCATCCCGCTCTCCTACAACTTCATGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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