© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|610 |
| Gene name | |
| Location | Contig_112:35647..37187 |
| Strand | + |
| Gene length (bp) | 1540 |
| Transcript length (bp) | 1350 |
| Coding sequence length (bp) | 1350 |
| Protein length (aa) | 450 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04791 | LMBR1 | LMBR1-like membrane protein | 3.3E-93 | 14 | 438 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7ZYA0|LMBD2_XENLA | LMBR1 domain-containing protein 2 OS=Xenopus laevis GN=lmbrd2 PE=2 SV=1 | 67 | 382 | 1.0E-22 |
| sp|Q54TM2|LMD2B_DICDI | LMBR1 domain-containing protein 2 homolog B OS=Dictyostelium discoideum GN=DDB_G0281669 PE=3 SV=1 | 8 | 437 | 5.0E-22 |
| sp|O94599|YC8B_SCHPO | LIMR family protein C622.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC622.11 PE=3 SV=1 | 49 | 220 | 3.0E-19 |
| sp|Q6P4P2|LMD2B_DANRE | LMBR1 domain-containing protein 2-B OS=Danio rerio GN=lmbrd2b PE=2 SV=1 | 21 | 393 | 7.0E-15 |
| sp|Q8C561|LMBD2_MOUSE | LMBR1 domain-containing protein 2 OS=Mus musculus GN=Lmbrd2 PE=1 SV=1 | 82 | 393 | 6.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7ZYA0|LMBD2_XENLA | LMBR1 domain-containing protein 2 OS=Xenopus laevis GN=lmbrd2 PE=2 SV=1 | 67 | 382 | 1.0E-22 |
| sp|Q54TM2|LMD2B_DICDI | LMBR1 domain-containing protein 2 homolog B OS=Dictyostelium discoideum GN=DDB_G0281669 PE=3 SV=1 | 8 | 437 | 5.0E-22 |
| sp|O94599|YC8B_SCHPO | LIMR family protein C622.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC622.11 PE=3 SV=1 | 49 | 220 | 3.0E-19 |
| sp|Q6P4P2|LMD2B_DANRE | LMBR1 domain-containing protein 2-B OS=Danio rerio GN=lmbrd2b PE=2 SV=1 | 21 | 393 | 7.0E-15 |
| sp|Q8C561|LMBD2_MOUSE | LMBR1 domain-containing protein 2 OS=Mus musculus GN=Lmbrd2 PE=1 SV=1 | 82 | 393 | 6.0E-14 |
| sp|Q54Q92|LMD2A_DICDI | LMBR1 domain-containing protein 2 homolog A OS=Dictyostelium discoideum GN=DDB_G0284019 PE=3 SV=1 | 92 | 383 | 7.0E-14 |
| sp|Q8MRQ4|LMBD2_DROME | LMBR1 domain-containing protein 2 homolog OS=Drosophila melanogaster GN=CG8135 PE=2 SV=2 | 83 | 436 | 2.0E-13 |
| sp|Q5F3F5|LMBD2_CHICK | LMBR1 domain-containing protein 2 OS=Gallus gallus GN=LMBRD2 PE=2 SV=1 | 82 | 394 | 3.0E-13 |
| sp|Q29BL9|LMBD2_DROPS | LMBR1 domain-containing protein 2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA20843 PE=3 SV=1 | 83 | 436 | 3.0E-12 |
| sp|Q68DH5|LMBD2_HUMAN | LMBR1 domain-containing protein 2 OS=Homo sapiens GN=LMBRD2 PE=2 SV=1 | 82 | 393 | 5.0E-12 |
| sp|Q61ZW5|LMBD2_CAEBR | LMBR1 domain-containing protein 2 homolog OS=Caenorhabditis briggsae GN=CBG02934 PE=3 SV=1 | 21 | 325 | 2.0E-10 |
| sp|Q18695|LMBD2_CAEEL | LMBR1 domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=C47G2.4 PE=3 SV=1 | 21 | 309 | 5.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 43 | 65 | 22 |
| 3 | 89 | 111 | 22 |
| 4 | 132 | 154 | 22 |
| 5 | 164 | 186 | 22 |
| 6 | 362 | 384 | 22 |
| 7 | 410 | 432 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|610 MPHVTSASAPVGSILFCLAALLVISLVVLLILRHYLPLRSTPAFYLVPIFFALWLPSIVVLLVPVDLASSAATDD EATRGIWLPQRVVLVSWRITYWLTFVLTWFILPILAEYSDAGYRDPNDRLRYSLRQNAQFYAILALAGIAGLVYI AVVYKFTFEYLKALVMALSYCWGLVLAIYLMGHGLVSIPRRLIRSARLSGSIMRLYTRAPRAYERMQDSLVALEE VEAQVSELGRRKVGTAADFRDWIEELQESVEVAPAQLAQSGARGPGPHDRTVPTVITDKFLADLTRRLDRARHAR SRYVDEWNGLVQEAMETQAILDSAGSKRLELGGVSPHAGVWARTTVLSPYARYICHFHVLPYARLALGLLLALAS VCILWSELVRYPLPALSVVRLSVIHHWVGDKAQVGFAGQTIAALWICYMCAAALTSVTEVKVWPSCASRSPTTS* |
| Coding | >Hirsu2|610 ATGCCTCACGTCACGAGCGCCTCGGCGCCCGTCGGCTCCATCCTCTTCTGCCTTGCCGCCCTGCTCGTCATCTCG CTCGTAGTGCTGCTCATCCTCCGGCACTACCTCCCTCTGCGCTCGACGCCCGCCTTCTACCTCGTCCCCATCTTC TTCGCCCTCTGGCTCCCGTCCATCGTCGTCCTGCTCGTCCCCGTGGACCTCGCCTCGAGCGCTGCCACCGACGAC GAGGCCACTCGCGGCATATGGCTTCCGCAACGTGTCGTCTTGGTCTCGTGGAGGATCACGTACTGGCTGACATTC GTCCTTACTTGGTTCATACTCCCGATCCTCGCCGAGTACTCCGACGCCGGTTACCGCGACCCCAACGACAGGCTC CGATATTCGCTCCGACAAAATGCGCAGTTCTACGCGATACTGGCCCTCGCCGGCATCGCCGGCCTGGTCTACATC GCCGTCGTCTACAAGTTCACGTTTGAATACCTCAAGGCCCTCGTCATGGCGCTCTCGTACTGCTGGGGCCTGGTG CTCGCCATCTACCTCATGGGCCACGGGCTGGTGTCGATCCCGAGGCGGCTGATCCGCAGCGCCAGGCTCAGCGGA AGCATCATGCGCCTCTACACCAGAGCGCCCCGGGCCTACGAGCGGATGCAGGACTCGCTCGTCGCCCTCGAGGAG GTCGAGGCCCAGGTGTCGGAGCTGGGCCGGCGCAAGGTCGGCACCGCGGCCGACTTCCGGGACTGGATAGAGGAG CTGCAAGAGTCGGTCGAGGTGGCGCCCGCGCAGCTCGCGCAGTCGGGCGCCCGCGGCCCGGGCCCTCACGACCGC ACCGTCCCGACCGTCATCACGGACAAGTTCCTGGCGGACCTGACGCGGAGGCTCGACCGCGCGCGCCACGCGAGG TCCCGGTACGTCGACGAATGGAACGGCCTGGTGCAGGAGGCGATGGAGACGCAGGCGATCCTCGACTCGGCCGGA TCCAAGAGGCTCGAGTTGGGCGGCGTCTCGCCCCACGCCGGCGTCTGGGCCAGGACGACGGTCCTGTCGCCGTAC GCCCGGTACATCTGCCACTTCCACGTGCTGCCGTACGCGCGCCTGGCGCTCGGCCTGTTGCTGGCGCTCGCGTCG GTCTGCATCCTGTGGTCGGAGCTGGTGCGGTACCCGCTGCCGGCGCTGTCCGTCGTCCGGCTCAGCGTCATCCAC CACTGGGTGGGCGACAAGGCGCAGGTCGGCTTCGCCGGGCAGACGATCGCGGCGCTGTGGATCTGCTACATGTGC GCGGCGGCGCTGACGTCGGTGACCGAGGTCAAGGTGTGGCCAAGCTGTGCATCCCGCTCTCCTACAACTTCATGA |
| Transcript | >Hirsu2|610 ATGCCTCACGTCACGAGCGCCTCGGCGCCCGTCGGCTCCATCCTCTTCTGCCTTGCCGCCCTGCTCGTCATCTCG CTCGTAGTGCTGCTCATCCTCCGGCACTACCTCCCTCTGCGCTCGACGCCCGCCTTCTACCTCGTCCCCATCTTC TTCGCCCTCTGGCTCCCGTCCATCGTCGTCCTGCTCGTCCCCGTGGACCTCGCCTCGAGCGCTGCCACCGACGAC GAGGCCACTCGCGGCATATGGCTTCCGCAACGTGTCGTCTTGGTCTCGTGGAGGATCACGTACTGGCTGACATTC GTCCTTACTTGGTTCATACTCCCGATCCTCGCCGAGTACTCCGACGCCGGTTACCGCGACCCCAACGACAGGCTC CGATATTCGCTCCGACAAAATGCGCAGTTCTACGCGATACTGGCCCTCGCCGGCATCGCCGGCCTGGTCTACATC GCCGTCGTCTACAAGTTCACGTTTGAATACCTCAAGGCCCTCGTCATGGCGCTCTCGTACTGCTGGGGCCTGGTG CTCGCCATCTACCTCATGGGCCACGGGCTGGTGTCGATCCCGAGGCGGCTGATCCGCAGCGCCAGGCTCAGCGGA AGCATCATGCGCCTCTACACCAGAGCGCCCCGGGCCTACGAGCGGATGCAGGACTCGCTCGTCGCCCTCGAGGAG GTCGAGGCCCAGGTGTCGGAGCTGGGCCGGCGCAAGGTCGGCACCGCGGCCGACTTCCGGGACTGGATAGAGGAG CTGCAAGAGTCGGTCGAGGTGGCGCCCGCGCAGCTCGCGCAGTCGGGCGCCCGCGGCCCGGGCCCTCACGACCGC ACCGTCCCGACCGTCATCACGGACAAGTTCCTGGCGGACCTGACGCGGAGGCTCGACCGCGCGCGCCACGCGAGG TCCCGGTACGTCGACGAATGGAACGGCCTGGTGCAGGAGGCGATGGAGACGCAGGCGATCCTCGACTCGGCCGGA TCCAAGAGGCTCGAGTTGGGCGGCGTCTCGCCCCACGCCGGCGTCTGGGCCAGGACGACGGTCCTGTCGCCGTAC GCCCGGTACATCTGCCACTTCCACGTGCTGCCGTACGCGCGCCTGGCGCTCGGCCTGTTGCTGGCGCTCGCGTCG GTCTGCATCCTGTGGTCGGAGCTGGTGCGGTACCCGCTGCCGGCGCTGTCCGTCGTCCGGCTCAGCGTCATCCAC CACTGGGTGGGCGACAAGGCGCAGGTCGGCTTCGCCGGGCAGACGATCGCGGCGCTGTGGATCTGCTACATGTGC GCGGCGGCGCTGACGTCGGTGACCGAGGTCAAGGTGTGGCCAAGCTGTGCATCCCGCTCTCCTACAACTTCATGA |
| Gene | >Hirsu2|610 ATGCCTCACGTCACGAGCGCCTCGGCGCCCGTCGGCTCCATCCTCTTCTGCCTTGCCGCCCTGCTCGTCATCTCG CTCGTAGTGCTGCTCATCCTCCGGCACTACCTCCCTCTGCGCTCGACGCCCGCCTTCTACCTCGTCCCCATCTTC TTCGCCCTCTGGCTCCCGTCCATCGTCGTCCTGCTCGTCCCCGTGGACCTCGCCTCGAGCGCTGCCACCGACGAC GAGGCCACTCGCGGCATATGGCTTCCGCAACGTGTCGTCTTGGTCTCGTGGAGGATCACGTACTGGCTGACATTC GTCCTTACTTGGTGCGCGCACGCCAGACCGGGCCCTCTCCTTCACCTCTTCNNCCTTCCCCCCTTCCCCCCCCCC CCCCCCCCGATTTTTTTTTCTTTTTCGCATTCGGCCGAAATCTGATTCTGGTGCGACAGGTTCATACTCCCGATC CTCGCCGAGTACTCCGACGCCGGTTACCGCGACCCCAACGACAGGCTCCGATATTCGCTCCGACAAAATGCGCAG TTCTACGCGATACTGGCCCTCGCCGGCATCGCCGGCCTGGTCTACATCGCCGTCGTCTACAAGTTCACGTTTGAA TACCTCAAGGCCCTCGTCATGGCGCTCTCGTACTGCTGGGGCCTGGTGCTCGCCATCTACCTCATGGGCCACGGG CTGGTGTCGATCCCGAGGCGGCTGATCCGCAGCGCCAGGCTCAGCGGAAGCATCATGCGCCTCTACACCAGAGCG CCCCGGGCCTACGAGCGGATGCAGGACTCGCTCGTCGCCCTCGAGGAGGTCGAGGCCCAGGTGTCGGAGCTGGGC CGGCGCAAGGTCGGCACCGCGGCCGACTTCCGGGACTGGATAGAGGAGCTGCAAGAGTCGGTCGAGGTGGCGCCC GCGCAGCTCGCGCAGTCGGGCGCCCGCGGCCCGGGCCCTCACGACCGCACCGTCCCGACCGTCATCACGGACAAG TTCCTGGCGGACCTGACGCGGAGGCTCGACCGCGCGCGCCACGCGAGGTCCCGGTACGTCGACGAATGGAACGGC CTGGTGCAGGAGGCGATGGAGACGCAGGCGATCCTCGACTCGGCCGGATCCAAGAGGCTCGAGTTGGGCGGCGTC TCGCCCCACGCCGGCGTCTGGGCCAGGACGACGGTCCTGTCGCCGTACGCCCGGTACATCTGCCACTTCCACGTG CTGCCGTACGCGCGCCTGGCGCTCGGCCTGTTGCTGGCGCTCGCGTCGGTCTGCATCCTGTGGTCGGAGCTGGTG CGGTACCCGCTGCCGGCGCTGTCCGTCGTCCGGCTCAGCGTCATCCACCACTGGGTGGGCGACAAGGCGCAGGTC GGCTTCGCCGGGCAGACGATCGCGGCGCTGTGGATCTGCTACATGTGCGCGGCGGCGCTGACGTCGGTGACCGAG GTCAAGGTGTGGCGCGGGCGGGCGCTGGTCCGGCGCAACACGGCGCACGAGTCGGCCTTTTGGTACGCGTCGCAG GTGGCCAAGCTGTGCATCCCGCTCTCCTACAACTTCATGA |