Protein ID | Hirsu2|6097 |
Gene name | |
Location | Contig_309:20107..23002 |
Strand | + |
Gene length (bp) | 2895 |
Transcript length (bp) | 2652 |
Coding sequence length (bp) | 2652 |
Protein length (aa) | 884 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00026 | Asp | Eukaryotic aspartyl protease | 2.1E-07 | 50 | 402 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1489 | 0.1118 | 0.2911 | 0.7408 | 0.0674 | 0.013 | 0.0956 | 0.3662 | 0.1541 | 0.0554 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 448 | 470 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3309 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6097 MRPTASTAAAAAAAAVFAGVAHALDPAPVSLQASDWLGIDGNWSTVSFLLGSDSEVVNVLLSTTLSEFWAIGPGG CVDKDPHCNNARGGIYNPNKSKHWTPMGLWQLGLQYFGYNDNGEYGLDTVNAYSPITNIAFGMSNVLMSAINTTS PFLGFFGLGIQQGRFGDLVADSPITQAVKTFGWIPSYSYGYTAGAHYRNTVVSATLGGYDSARLVQHDTAFTLTQ GESIPRTLVRGIQLASNKTHGRLGVGRSTEVLSDWNTSFTAMIDSSTPYLWLPEPICNRFAEVLNLTYNNTLELY TLPNDLYRQYSANNSLIFTFSLTSFDNHDNFGSPLEVPGLVNITVPLQAFVSLLQYPFGRGIIKYGDPAVPYFTL KKSQNDTFIIGRTFLQESYLITKFDEALYSIHQALFPANPLTDAQLIPIRQPSNSPYPPPPSPKSSDDLTTAQMA GIAVGAVLLCVVVLAAFYYYRRRRRVRKGKTADEADDHNDSASTLAPDSPKTPVSKILSKIACRKLSSSRRTIPG TADGVAHGRSDDASGVAQMPSEAPDCQIFELAASVAPVELDAGSDNHSIEETELGTVNSQHMSTYELARRKIERQ LRGPVPEYTPPADGTLLRQEKAIPDPGPSEARPAMDHPSPSSPTRSAGGDWGSSTYPMSEPSPVSPRAEWSTRST LPPSPVTGSLASKAYHGSTGSQSHPADTASAGTSRSHQSDRSTAATSTAESDAPPRPSSHRTHIDASKVVCLGPL PENYHIQRQNLVTRLVGPDGRTVSMSMFNANSLPSEGSLGSNYTEEEDRIVEEMTRQASLSQVRSSQSYYRSPSH KGGDERPCRPPDVEESMKLRGAKKARPAQEQGKGRIDAGRDLIHVPQMADKRYSWEDQ* |
Coding | >Hirsu2|6097 ATGCGACCCACGGCCTCAACAGCAGCAGCAGCCGCCGCCGCCGCCGTCTTCGCTGGTGTAGCTCATGCTTTGGAT CCCGCCCCCGTCTCTCTGCAGGCCAGCGACTGGTTGGGTATAGATGGTAATTGGTCAACCGTCTCCTTTCTCCTC GGCTCCGACTCCGAAGTCGTCAATGTCCTCCTCAGCACCACCCTCTCCGAGTTCTGGGCCATTGGGCCCGGAGGA TGCGTCGATAAGGATCCCCATTGCAACAATGCCCGTGGCGGCATATACAATCCGAACAAGTCCAAGCATTGGACT CCCATGGGACTGTGGCAGCTGGGATTGCAGTACTTCGGCTATAACGACAACGGCGAATATGGCCTCGACACCGTC AACGCCTACAGCCCCATCACGAATATAGCCTTCGGCATGTCCAACGTCCTCATGTCGGCCATCAACACCACGAGC CCCTTTCTCGGCTTTTTCGGTCTGGGCATCCAACAGGGCAGGTTCGGCGACCTCGTTGCCGATTCTCCCATCACA CAGGCCGTCAAGACGTTTGGCTGGATCCCGAGCTACAGCTACGGTTACACGGCCGGTGCCCATTACCGCAACACC GTCGTGTCCGCCACGCTGGGCGGCTACGACTCCGCCCGCCTTGTGCAGCACGACACCGCATTCACCCTGACGCAA GGCGAGAGTATCCCGCGCACCCTGGTCCGAGGCATCCAGCTGGCCTCCAACAAGACCCACGGCCGGCTCGGCGTC GGACGATCCACCGAAGTCTTGTCGGATTGGAACACTTCCTTTACCGCCATGATCGACAGCTCCACCCCCTATCTC TGGCTTCCCGAACCGATCTGCAACCGTTTCGCCGAAGTGCTCAACCTGACATACAACAACACGCTCGAGCTCTAC ACCCTCCCTAATGACCTCTATCGACAGTACAGCGCCAACAACTCCCTCATCTTCACCTTCAGCCTCACCAGCTTC GACAACCACGATAACTTCGGCTCCCCCCTCGAGGTCCCCGGATTGGTCAACATCACCGTCCCTCTGCAGGCCTTT GTCAGCTTGCTGCAGTATCCCTTCGGCCGCGGCATCATCAAATATGGCGATCCCGCCGTGCCCTACTTTACCCTC AAGAAATCCCAAAACGACACCTTCATTATCGGTCGCACCTTCTTACAGGAGTCATATCTCATCACCAAGTTCGAC GAGGCCCTCTACTCCATTCATCAGGCCCTCTTCCCCGCCAATCCTCTGACCGATGCCCAGCTGATCCCCATCCGT CAGCCGAGCAACAGCCCCTATCCTCCGCCTCCGTCGCCCAAGTCGAGTGATGACCTCACCACGGCTCAGATGGCC GGCATCGCCGTCGGCGCCGTTCTGCTCTGCGTCGTTGTTCTAGCCGCCTTTTACTACTACCGCCGGAGGAGGCGA GTGCGCAAGGGCAAGACTGCCGACGAGGCTGATGACCACAATGATTCGGCCTCCACCCTCGCTCCAGACTCGCCC AAGACGCCCGTCTCCAAGATCTTGTCCAAGATCGCCTGTCGGAAACTGTCTTCTTCGCGTCGGACCATCCCCGGC ACGGCCGACGGTGTCGCACACGGTCGGAGCGACGATGCCAGTGGCGTGGCCCAGATGCCCTCGGAAGCGCCCGAT TGTCAAATTTTCGAGCTGGCTGCCTCCGTTGCCCCCGTCGAACTCGACGCCGGCAGCGACAACCACTCCATTGAA GAGACGGAATTGGGTACCGTCAACTCGCAGCACATGAGCACCTACGAGCTGGCTCGGAGGAAGATTGAGCGGCAG CTGCGAGGCCCGGTCCCCGAGTACACGCCACCGGCCGACGGCACCCTCTTGCGCCAAGAAAAAGCCATCCCCGAC CCCGGACCGTCGGAAGCCCGGCCGGCGATGGACCACCCATCCCCTTCATCTCCCACCAGGTCGGCCGGCGGCGAT TGGGGTTCCAGCACATATCCCATGTCGGAACCCTCGCCCGTCTCTCCGAGGGCAGAGTGGAGCACGCGCTCGACA TTACCACCGTCTCCTGTGACGGGGTCTTTGGCCTCGAAAGCATACCACGGCAGCACCGGCAGCCAGAGCCACCCG GCTGACACGGCATCCGCCGGAACCAGCCGCTCTCATCAGTCCGACCGCTCGACGGCCGCGACATCGACTGCCGAG TCCGACGCTCCGCCGCGGCCCTCGTCTCACCGGACGCACATCGATGCCTCCAAGGTCGTCTGCCTTGGGCCGTTG CCGGAAAACTACCACATACAGCGGCAAAACCTCGTCACTCGCCTGGTCGGCCCCGACGGCAGGACCGTCTCCATG TCCATGTTCAACGCGAACTCGTTGCCCTCGGAGGGCAGCCTGGGCAGCAACTATACGGAAGAGGAGGATAGGATC GTCGAGGAGATGACGCGGCAGGCGAGCCTCTCGCAAGTCCGGTCGAGCCAGTCGTACTATCGTTCCCCGTCGCAC AAGGGTGGAGACGAACGTCCTTGCCGACCACCCGACGTGGAAGAGTCGATGAAGCTGCGTGGGGCGAAGAAGGCG AGGCCCGCCCAGGAGCAGGGTAAGGGACGCATCGATGCGGGCCGGGACCTGATCCACGTGCCGCAGATGGCCGAC AAACGATACAGCTGGGAGGACCAATGA |
Transcript | >Hirsu2|6097 ATGCGACCCACGGCCTCAACAGCAGCAGCAGCCGCCGCCGCCGCCGTCTTCGCTGGTGTAGCTCATGCTTTGGAT CCCGCCCCCGTCTCTCTGCAGGCCAGCGACTGGTTGGGTATAGATGGTAATTGGTCAACCGTCTCCTTTCTCCTC GGCTCCGACTCCGAAGTCGTCAATGTCCTCCTCAGCACCACCCTCTCCGAGTTCTGGGCCATTGGGCCCGGAGGA TGCGTCGATAAGGATCCCCATTGCAACAATGCCCGTGGCGGCATATACAATCCGAACAAGTCCAAGCATTGGACT CCCATGGGACTGTGGCAGCTGGGATTGCAGTACTTCGGCTATAACGACAACGGCGAATATGGCCTCGACACCGTC AACGCCTACAGCCCCATCACGAATATAGCCTTCGGCATGTCCAACGTCCTCATGTCGGCCATCAACACCACGAGC CCCTTTCTCGGCTTTTTCGGTCTGGGCATCCAACAGGGCAGGTTCGGCGACCTCGTTGCCGATTCTCCCATCACA CAGGCCGTCAAGACGTTTGGCTGGATCCCGAGCTACAGCTACGGTTACACGGCCGGTGCCCATTACCGCAACACC GTCGTGTCCGCCACGCTGGGCGGCTACGACTCCGCCCGCCTTGTGCAGCACGACACCGCATTCACCCTGACGCAA GGCGAGAGTATCCCGCGCACCCTGGTCCGAGGCATCCAGCTGGCCTCCAACAAGACCCACGGCCGGCTCGGCGTC GGACGATCCACCGAAGTCTTGTCGGATTGGAACACTTCCTTTACCGCCATGATCGACAGCTCCACCCCCTATCTC TGGCTTCCCGAACCGATCTGCAACCGTTTCGCCGAAGTGCTCAACCTGACATACAACAACACGCTCGAGCTCTAC ACCCTCCCTAATGACCTCTATCGACAGTACAGCGCCAACAACTCCCTCATCTTCACCTTCAGCCTCACCAGCTTC GACAACCACGATAACTTCGGCTCCCCCCTCGAGGTCCCCGGATTGGTCAACATCACCGTCCCTCTGCAGGCCTTT GTCAGCTTGCTGCAGTATCCCTTCGGCCGCGGCATCATCAAATATGGCGATCCCGCCGTGCCCTACTTTACCCTC AAGAAATCCCAAAACGACACCTTCATTATCGGTCGCACCTTCTTACAGGAGTCATATCTCATCACCAAGTTCGAC GAGGCCCTCTACTCCATTCATCAGGCCCTCTTCCCCGCCAATCCTCTGACCGATGCCCAGCTGATCCCCATCCGT CAGCCGAGCAACAGCCCCTATCCTCCGCCTCCGTCGCCCAAGTCGAGTGATGACCTCACCACGGCTCAGATGGCC GGCATCGCCGTCGGCGCCGTTCTGCTCTGCGTCGTTGTTCTAGCCGCCTTTTACTACTACCGCCGGAGGAGGCGA GTGCGCAAGGGCAAGACTGCCGACGAGGCTGATGACCACAATGATTCGGCCTCCACCCTCGCTCCAGACTCGCCC AAGACGCCCGTCTCCAAGATCTTGTCCAAGATCGCCTGTCGGAAACTGTCTTCTTCGCGTCGGACCATCCCCGGC ACGGCCGACGGTGTCGCACACGGTCGGAGCGACGATGCCAGTGGCGTGGCCCAGATGCCCTCGGAAGCGCCCGAT TGTCAAATTTTCGAGCTGGCTGCCTCCGTTGCCCCCGTCGAACTCGACGCCGGCAGCGACAACCACTCCATTGAA GAGACGGAATTGGGTACCGTCAACTCGCAGCACATGAGCACCTACGAGCTGGCTCGGAGGAAGATTGAGCGGCAG CTGCGAGGCCCGGTCCCCGAGTACACGCCACCGGCCGACGGCACCCTCTTGCGCCAAGAAAAAGCCATCCCCGAC CCCGGACCGTCGGAAGCCCGGCCGGCGATGGACCACCCATCCCCTTCATCTCCCACCAGGTCGGCCGGCGGCGAT TGGGGTTCCAGCACATATCCCATGTCGGAACCCTCGCCCGTCTCTCCGAGGGCAGAGTGGAGCACGCGCTCGACA TTACCACCGTCTCCTGTGACGGGGTCTTTGGCCTCGAAAGCATACCACGGCAGCACCGGCAGCCAGAGCCACCCG GCTGACACGGCATCCGCCGGAACCAGCCGCTCTCATCAGTCCGACCGCTCGACGGCCGCGACATCGACTGCCGAG TCCGACGCTCCGCCGCGGCCCTCGTCTCACCGGACGCACATCGATGCCTCCAAGGTCGTCTGCCTTGGGCCGTTG CCGGAAAACTACCACATACAGCGGCAAAACCTCGTCACTCGCCTGGTCGGCCCCGACGGCAGGACCGTCTCCATG TCCATGTTCAACGCGAACTCGTTGCCCTCGGAGGGCAGCCTGGGCAGCAACTATACGGAAGAGGAGGATAGGATC GTCGAGGAGATGACGCGGCAGGCGAGCCTCTCGCAAGTCCGGTCGAGCCAGTCGTACTATCGTTCCCCGTCGCAC AAGGGTGGAGACGAACGTCCTTGCCGACCACCCGACGTGGAAGAGTCGATGAAGCTGCGTGGGGCGAAGAAGGCG AGGCCCGCCCAGGAGCAGGGTAAGGGACGCATCGATGCGGGCCGGGACCTGATCCACGTGCCGCAGATGGCCGAC AAACGATACAGCTGGGAGGACCAATGA |
Gene | >Hirsu2|6097 ATGCGACCCACGGCCTCAACAGCAGCAGCAGCCGCCGCCGCCGCCGTCTTCGCTGGTGTAGCTCATGCTTTGGAT CCCGCCCCCGTCTCTCTGCAGGCCAGCGACTGGTTCGTGATACCCTCGCTTGCACTCAATTCCCCCCTCCCCCTC GCTGACCCGTTACCGCCGCTCCACAGGTTGGGTATAGATGGTAATTGGTCAACCGTCTCCTTTCTCCTCGGCTCC GACTCCGAAGTCGTCAATGTCCTCCTCAGCACCACCCTCTCCGAGTTCTGGGCCATTGGGCCCGGAGGATGCGTC GATAGTATGTTTCTCGCCCCGTCTCCTCCGTTCCTGCGGCTGCCTCTTTCGCTCGCGTCGCCCGCCCCTCTGCCG TTGCTCGCTCCTCACCTCGTACGTCTGGCTGACCTCTCCCGTCCCCCCCAGAGGATCCCCATTGCAACAATGCCC GTGGCGGCATATACAATCCGAACAAGTCCAAGCATTGGACTCCCATGGGACTGTGGCAGCTGGGATTGCAGTACT TCGGCTATAACGACAACGGCGAATATGGCCTCGACACCGTCAACGCCTACAGCCCCATCACGAATATAGCCTTCG GCATGTCCAACGTCCTCATGTCGGCCATCAACACCACGAGCCCCTTTCTCGGCTTTTTCGGTCTGGGCATCCAAC AGGGCAGGTTCGGCGACCTCGTTGCCGATTCTCCCATCACACAGGCCGTCAAGACGTTTGGCTGGATCCCGAGCT ACAGCTACGGTTACACGGCCGGTGCCCATTACCGTATGCATCCCTGGCCGTGACTGCTCGTGCCTTGCTTGCTGA CAAGCCACAGGCAACACCGTCGTGTCCGCCACGCTGGGCGGCTACGACTCCGCCCGCCTTGTGCAGCACGACACC GCATTCACCCTGACGCAAGGCGAGAGTATCCCGCGCACCCTGGTCCGAGGCATCCAGCTGGCCTCCAACAAGACC CACGGCCGGCTCGGCGTCGGACGATCCACCGAAGTCTTGTCGGATTGGAACACTTCCTTTACCGCCATGATCGAC AGCTCCACCCCCTATCTCTGGCTTCCCGAACCGATCTGCAACCGTTTCGCCGAAGTGCTCAACCTGACATACAAC AACACGCTCGAGCTCTACACCCTCCCTAATGACCTCTATCGACAGTACAGCGCCAACAACTCCCTCATCTTCACC TTCAGCCTCACCAGCTTCGACAACCACGATAACTTCGGCTCCCCCCTCGAGGTCCCCGGATTGGTCAACATCACC GTCCCTCTGCAGGCCTTTGTCAGCTTGCTGCAGTATCCCTTCGGCCGCGGCATCATCAAATATGGCGATCCCGCC GTGCCCTACTTTACCCTCAAGAAATCCCAAAACGACACCTTCATTATCGGTCGCACCTTCTTACAGGAGTCATAT CTCATCACCAAGTTCGACGAGGCCCTCTACTCCATTCATCAGGCCCTCTTCCCCGCCAATCCTCTGACCGATGCC CAGCTGATCCCCATCCGTCAGCCGAGCAACAGCCCCTATCCTCCGCCTCCGTCGCCCAAGTCGAGTGATGACCTC ACCACGGCTCAGATGGCCGGCATCGCCGTCGGCGCCGTTCTGCTCTGCGTCGTTGTTCTAGCCGCCTTTTACTAC TACCGCCGGAGGAGGCGAGTGCGCAAGGGCAAGACTGCCGACGAGGCTGATGACCACAATGATTCGGCCTCCACC CTCGCTCCAGACTCGCCCAAGACGCCCGTCTCCAAGATCTTGTCCAAGATCGCCTGTCGGAAACTGTCTTCTTCG CGTCGGACCATCCCCGGCACGGCCGACGGTGTCGCACACGGTCGGAGCGACGATGCCAGTGGCGTGGCCCAGATG CCCTCGGAAGCGCCCGATTGTCAAATTTTCGAGCTGGCTGCCTCCGTTGCCCCCGTCGAACTCGACGCCGGCAGC GACAACCACTCCATTGAAGAGACGGAATTGGGTACCGTCAACTCGCAGCACATGAGCACCTACGAGCTGGCTCGG AGGAAGATTGAGCGGCAGCTGCGAGGCCCGGTCCCCGAGTACACGCCACCGGCCGACGGCACCCTCTTGCGCCAA GAAAAAGCCATCCCCGACCCCGGACCGTCGGAAGCCCGGCCGGCGATGGACCACCCATCCCCTTCATCTCCCACC AGGTCGGCCGGCGGCGATTGGGGTTCCAGCACATATCCCATGTCGGAACCCTCGCCCGTCTCTCCGAGGGCAGAG TGGAGCACGCGCTCGACATTACCACCGTCTCCTGTGACGGGGTCTTTGGCCTCGAAAGCATACCACGGCAGCACC GGCAGCCAGAGCCACCCGGCTGACACGGCATCCGCCGGAACCAGCCGCTCTCATCAGTCCGACCGCTCGACGGCC GCGACATCGACTGCCGAGTCCGACGCTCCGCCGCGGCCCTCGTCTCACCGGACGCACATCGATGCCTCCAAGGTC GTCTGCCTTGGGCCGTTGCCGGAAAACTACCACATACAGCGGCAAAACCTCGTCACTCGCCTGGTCGGCCCCGAC GGCAGGACCGTCTCCATGTCCATGTTCAACGCGAACTCGTTGCCCTCGGAGGGCAGCCTGGGCAGCAACTATACG GAAGAGGAGGATAGGATCGTCGAGGAGATGACGCGGCAGGCGAGCCTCTCGCAAGTCCGGTCGAGCCAGTCGTAC TATCGTTCCCCGTCGCACAAGGGTGGAGACGAACGTCCTTGCCGACCACCCGACGTGGAAGAGTCGATGAAGCTG CGTGGGGCGAAGAAGGCGAGGCCCGCCCAGGAGCAGGGTAAGGGACGCATCGATGCGGGCCGGGACCTGATCCAC GTGCCGCAGATGGCCGACAAACGATACAGCTGGGAGGACCAATGA |