Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6079
Gene name
LocationContig_308:4379..4815
Strand-
Gene length (bp)436
Transcript length (bp)297
Coding sequence length (bp)297
Protein length (aa) 99

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1022 0.0336 0.9266 0.0849 0.1569 0.0173 0.0917 0.1168 0.0226 0.0038

SignalP

SignalP signal predicted Location Score
Yes 1 - 17 0.999477

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7645
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|6079 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6079
MKLSLLASTAFVAAALAGPMRELVRHRVSYRYNDPESYQLHDSEVNQIVRDDTGATAWICALSLPPICFPPALTE
EAIAKLKGLNGVVINDIEEHQAQ*
Coding >Hirsu2|6079
ATGAAGCTCTCGCTCCTCGCCAGCACCGCCTTCGTCGCCGCCGCCCTGGCCGGCCCGATGCGCGAGCTCGTCCGC
CACCGCGTCTCCTACCGCTACAACGACCCCGAGTCGTATCAGCTGCACGACAGTGAGGTCAACCAGATCGTGCGA
GACGACACCGGCGCCACCGCCTGGATCTGCGCCCTGTCCTTGCCACCCATCTGCTTCCCTCCGGCCCTGACCGAG
GAGGCCATCGCCAAGTTGAAGGGGTTGAACGGCGTCGTTATCAACGACATCGAGGAGCACCAGGCGCAGTAA
Transcript >Hirsu2|6079
ATGAAGCTCTCGCTCCTCGCCAGCACCGCCTTCGTCGCCGCCGCCCTGGCCGGCCCGATGCGCGAGCTCGTCCGC
CACCGCGTCTCCTACCGCTACAACGACCCCGAGTCGTATCAGCTGCACGACAGTGAGGTCAACCAGATCGTGCGA
GACGACACCGGCGCCACCGCCTGGATCTGCGCCCTGTCCTTGCCACCCATCTGCTTCCCTCCGGCCCTGACCGAG
GAGGCCATCGCCAAGTTGAAGGGGTTGAACGGCGTCGTTATCAACGACATCGAGGAGCACCAGGCGCAGTAA
Gene >Hirsu2|6079
ATGAAGCTCTCGCTCCTCGCCAGCACCGCCTTCGTCGCCGCCGCCCTGGCCGGCCCGATGCGCGAGCTCGTCCGC
CACCGCGTCTCCTACCGCTACAACGACCCCGAGTCGTATCAGCTGCACGACAGTGAGGTCAACCAGTGAGTCGTT
CCGGCCCCGGGATCCGGTGCGTGGACGCTGTTCGCCGTCGAACGGGCTGACCGAGTGCTTGTGGTGAAGGATCGT
GCGAGACGACACCGGCGCCACCGCCTGGATCTGCGCCCTGTCCTTGCCACCCATCTGCTTCCCTCCGTAAGCAAG
CCCAAGCCCCCGTCTGCGCGGCCAGGGCGAAGCTAACGACCCTTGTTCCAGGGCCCTGACCGAGGAGGCCATCGC
CAAGTTGAAGGGGTTGAACGGCGTCGTTATCAACGACATCGAGGAGCACCAGGCGCAGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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