© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6040 |
| Gene name | |
| Location | Contig_305:11135..11662 |
| Strand | - |
| Gene length (bp) | 527 |
| Transcript length (bp) | 474 |
| Coding sequence length (bp) | 474 |
| Protein length (aa) | 158 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1486 | 0.0662 | 0.934 | 0.0858 | 0.0659 | 0.0105 | 0.289 | 0.091 | 0.1823 | 0.0043 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 23 | 0.999401 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6198 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6040 MYGHLRIALMALSVLLGLQLCLATPVGPFARTRRIAAVDVTARAQCMVEAERTGSIFEHETPQGKSLLTFSIDWL LVTFADGRLAFATLQYDPAIVRGDRTPLHPKGAAPNANANIWAQKQAGPGAVQKATEKADEYANHPAVPKGKGTK VDTGSFS* |
| Coding | >Hirsu2|6040 ATGTATGGACACCTGCGCATCGCCTTGATGGCCCTCTCGGTCCTTCTTGGCCTCCAGCTTTGCCTTGCGACCCCC GTGGGTCCTTTTGCGCGGACCCGGAGGATCGCCGCCGTCGACGTCACAGCAAGGGCCCAGTGCATGGTCGAAGCA GAGCGGACCGGGAGCATCTTCGAGCACGAAACCCCCCAAGGTAAGTCACTCCTCACCTTCAGCATCGACTGGCTC CTCGTCACTTTTGCTGACGGGCGGCTTGCGTTCGCGACTCTGCAGTACGACCCAGCAATCGTCAGGGGAGACCGT ACTCCTCTTCACCCGAAGGGCGCCGCACCGAATGCCAATGCCAATATTTGGGCCCAGAAACAGGCCGGCCCCGGG GCTGTGCAGAAGGCGACAGAGAAAGCCGATGAATATGCGAATCATCCTGCCGTTCCGAAAGGGAAGGGAACGAAG GTGGACACCGGAAGCTTCAGTTAA |
| Transcript | >Hirsu2|6040 ATGTATGGACACCTGCGCATCGCCTTGATGGCCCTCTCGGTCCTTCTTGGCCTCCAGCTTTGCCTTGCGACCCCC GTGGGTCCTTTTGCGCGGACCCGGAGGATCGCCGCCGTCGACGTCACAGCAAGGGCCCAGTGCATGGTCGAAGCA GAGCGGACCGGGAGCATCTTCGAGCACGAAACCCCCCAAGGTAAGTCACTCCTCACCTTCAGCATCGACTGGCTC CTCGTCACTTTTGCTGACGGGCGGCTTGCGTTCGCGACTCTGCAGTACGACCCAGCAATCGTCAGGGGAGACCGT ACTCCTCTTCACCCGAAGGGCGCCGCACCGAATGCCAATGCCAATATTTGGGCCCAGAAACAGGCCGGCCCCGGG GCTGTGCAGAAGGCGACAGAGAAAGCCGATGAATATGCGAATCATCCTGCCGTTCCGAAAGGGAAGGGAACGAAG GTGGACACCGGAAGCTTCAGTTAA |
| Gene | >Hirsu2|6040 ATGTATGGACACCTGCGCATCGCCTTGATGGCCCTCTCGGTCCTTCTTGGCCTCCAGCTTTGCCTTGCGACCCCC GTGGGTCCTTTTGGTAAAGGAGGATTCCCGTCGACCTCGCGGATCCCATCGACTTCGGGACCGCAGCGCGGACCC GGAGGATCGCCGCCGTCGACGTCACAGCAAGGGCCCAGTGCATGGTCGAAGCAGAGCGGACCGGGAGCATCTTCG AGCACGAAACCCCCCAAGGTAAGTCACTCCTCACCTTCAGCATCGACTGGCTCCTCGTCACTTTTGCTGACGGGC GGCTTGCGTTCGCGACTCTGCAGTACGACCCAGCAATCGTCAGGGGAGACCGTACTCCTCTTCACCCGAAGGGCG CCGCACCGAATGCCAATGCCAATATTTGGGCCCAGAAACAGGCCGGCCCCGGGGCTGTGCAGAAGGCGACAGAGA AAGCCGATGAATATGCGAATCATCCTGCCGTTCCGAAAGGGAAGGGAACGAAGGTGGACACCGGAAGCTTCAGTT AA |