Protein ID | Hirsu2|6040 |
Gene name | |
Location | Contig_305:11135..11662 |
Strand | - |
Gene length (bp) | 527 |
Transcript length (bp) | 474 |
Coding sequence length (bp) | 474 |
Protein length (aa) | 158 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1486 | 0.0662 | 0.934 | 0.0858 | 0.0659 | 0.0105 | 0.289 | 0.091 | 0.1823 | 0.0043 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 23 | 0.999401 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 6198 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6040 MYGHLRIALMALSVLLGLQLCLATPVGPFARTRRIAAVDVTARAQCMVEAERTGSIFEHETPQGKSLLTFSIDWL LVTFADGRLAFATLQYDPAIVRGDRTPLHPKGAAPNANANIWAQKQAGPGAVQKATEKADEYANHPAVPKGKGTK VDTGSFS* |
Coding | >Hirsu2|6040 ATGTATGGACACCTGCGCATCGCCTTGATGGCCCTCTCGGTCCTTCTTGGCCTCCAGCTTTGCCTTGCGACCCCC GTGGGTCCTTTTGCGCGGACCCGGAGGATCGCCGCCGTCGACGTCACAGCAAGGGCCCAGTGCATGGTCGAAGCA GAGCGGACCGGGAGCATCTTCGAGCACGAAACCCCCCAAGGTAAGTCACTCCTCACCTTCAGCATCGACTGGCTC CTCGTCACTTTTGCTGACGGGCGGCTTGCGTTCGCGACTCTGCAGTACGACCCAGCAATCGTCAGGGGAGACCGT ACTCCTCTTCACCCGAAGGGCGCCGCACCGAATGCCAATGCCAATATTTGGGCCCAGAAACAGGCCGGCCCCGGG GCTGTGCAGAAGGCGACAGAGAAAGCCGATGAATATGCGAATCATCCTGCCGTTCCGAAAGGGAAGGGAACGAAG GTGGACACCGGAAGCTTCAGTTAA |
Transcript | >Hirsu2|6040 ATGTATGGACACCTGCGCATCGCCTTGATGGCCCTCTCGGTCCTTCTTGGCCTCCAGCTTTGCCTTGCGACCCCC GTGGGTCCTTTTGCGCGGACCCGGAGGATCGCCGCCGTCGACGTCACAGCAAGGGCCCAGTGCATGGTCGAAGCA GAGCGGACCGGGAGCATCTTCGAGCACGAAACCCCCCAAGGTAAGTCACTCCTCACCTTCAGCATCGACTGGCTC CTCGTCACTTTTGCTGACGGGCGGCTTGCGTTCGCGACTCTGCAGTACGACCCAGCAATCGTCAGGGGAGACCGT ACTCCTCTTCACCCGAAGGGCGCCGCACCGAATGCCAATGCCAATATTTGGGCCCAGAAACAGGCCGGCCCCGGG GCTGTGCAGAAGGCGACAGAGAAAGCCGATGAATATGCGAATCATCCTGCCGTTCCGAAAGGGAAGGGAACGAAG GTGGACACCGGAAGCTTCAGTTAA |
Gene | >Hirsu2|6040 ATGTATGGACACCTGCGCATCGCCTTGATGGCCCTCTCGGTCCTTCTTGGCCTCCAGCTTTGCCTTGCGACCCCC GTGGGTCCTTTTGGTAAAGGAGGATTCCCGTCGACCTCGCGGATCCCATCGACTTCGGGACCGCAGCGCGGACCC GGAGGATCGCCGCCGTCGACGTCACAGCAAGGGCCCAGTGCATGGTCGAAGCAGAGCGGACCGGGAGCATCTTCG AGCACGAAACCCCCCAAGGTAAGTCACTCCTCACCTTCAGCATCGACTGGCTCCTCGTCACTTTTGCTGACGGGC GGCTTGCGTTCGCGACTCTGCAGTACGACCCAGCAATCGTCAGGGGAGACCGTACTCCTCTTCACCCGAAGGGCG CCGCACCGAATGCCAATGCCAATATTTGGGCCCAGAAACAGGCCGGCCCCGGGGCTGTGCAGAAGGCGACAGAGA AAGCCGATGAATATGCGAATCATCCTGCCGTTCCGAAAGGGAAGGGAACGAAGGTGGACACCGGAAGCTTCAGTT AA |