© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6035 |
| Gene name | |
| Location | Contig_3048:306..1379 |
| Strand | + |
| Gene length (bp) | 1073 |
| Transcript length (bp) | 891 |
| Coding sequence length (bp) | 891 |
| Protein length (aa) | 297 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04893 | Yip1 | Yip1 domain | 1.5E-13 | 159 | 291 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6P8|YIP4_SCHPO | Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1 | 154 | 295 | 3.0E-37 |
| sp|Q96EC8|YIPF6_HUMAN | Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=1 SV=2 | 157 | 286 | 9.0E-30 |
| sp|A6QLC6|YIPF6_BOVIN | Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1 | 157 | 286 | 2.0E-29 |
| sp|Q8BR70|YIPF6_MOUSE | Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=1 SV=1 | 34 | 286 | 8.0E-28 |
| sp|Q54RZ2|YIPF6_DICDI | Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2 | 152 | 286 | 1.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P6P8|YIP4_SCHPO | Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1 | 154 | 295 | 3.0E-37 |
| sp|Q96EC8|YIPF6_HUMAN | Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=1 SV=2 | 157 | 286 | 9.0E-30 |
| sp|A6QLC6|YIPF6_BOVIN | Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1 | 157 | 286 | 2.0E-29 |
| sp|Q8BR70|YIPF6_MOUSE | Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=1 SV=1 | 34 | 286 | 8.0E-28 |
| sp|Q54RZ2|YIPF6_DICDI | Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2 | 152 | 286 | 1.0E-27 |
| sp|Q4QQU5|YIPF6_RAT | Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=1 SV=1 | 157 | 286 | 4.0E-27 |
| sp|Q28CH8|YIPF6_XENTR | Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1 | 45 | 286 | 1.0E-26 |
| sp|Q6IQ85|YIPF6_DANRE | Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1 | 63 | 290 | 2.0E-24 |
| sp|P53093|YIP4_YEAST | Protein YIP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP4 PE=1 SV=2 | 73 | 292 | 2.0E-11 |
| sp|O94348|YIP1_SCHPO | Protein transport protein yip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yip1 PE=3 SV=1 | 155 | 296 | 5.0E-11 |
| sp|Q6NYF1|YIPF4_DANRE | Protein YIPF4 OS=Danio rerio GN=yipf4 PE=2 SV=1 | 161 | 286 | 8.0E-07 |
| sp|Q5ZJD7|YIPF4_CHICK | Protein YIPF4 OS=Gallus gallus GN=YIPF4 PE=2 SV=1 | 161 | 286 | 5.0E-06 |
| sp|Q9BSR8|YIPF4_HUMAN | Protein YIPF4 OS=Homo sapiens GN=YIPF4 PE=1 SV=1 | 161 | 286 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 162 | 180 | 18 |
| 2 | 187 | 207 | 20 |
| 3 | 222 | 244 | 22 |
| 4 | 249 | 271 | 22 |
| 5 | 275 | 294 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6035 MASSTQGNSNPLLDNDELIDPDDADLNDFDDPLTPRANQSTLTRDTGSGLSPRPLSRTYLTSSIPGEDRRAPQNT IDETAWETLRRDLLAVWAKLREVLYPSYLLDGTIFEPTGGLRGTYSNLRGAGIAGTREELTGLASRVVDTEALLQ CNISHSLRDWDLWGPLIFCLLLSLLLSFTARPHQKDAVFSGVFALVWLGEAVVTLQIKLLGGNISFAQSVCIIGY TLFPLVLAALMTALNLHWIARIPIYITLIAWSLAAGVSILGGSGVVKNRVILAVYPLFIFYGGLGCLCFMS* |
| Coding | >Hirsu2|6035 ATGGCATCCAGCACTCAAGGCAATAGCAACCCTTTGTTGGACAACGACGAACTAATTGATCCCGATGATGCCGAT TTGAACGACTTCGACGATCCTCTTACTCCCCGGGCTAATCAGTCAACACTCACGCGTGACACCGGCTCTGGACTT TCACCTCGGCCTCTAAGCCGGACTTATTTGACCTCATCAATTCCGGGCGAGGACCGAAGAGCTCCGCAGAACACA ATTGATGAGACGGCTTGGGAAACCCTTCGCCGCGATCTACTTGCTGTTTGGGCCAAGCTACGAGAAGTACTTTAT CCAAGCTACTTGCTTGACGGGACCATTTTTGAACCGACAGGGGGCCTTCGCGGCACATATTCTAATCTCCGTGGC GCCGGGATCGCTGGCACGAGAGAAGAGCTGACAGGTCTCGCCAGTCGTGTCGTAGACACTGAAGCGCTCTTGCAG TGCAATATAAGTCACAGCTTAAGGGACTGGGACTTATGGGGACCGCTTATTTTCTGTCTGCTTCTCAGTCTACTC CTGAGCTTCACCGCCCGCCCGCATCAAAAAGACGCAGTATTTAGCGGTGTCTTTGCTTTGGTTTGGCTCGGCGAA GCAGTGGTAACGCTCCAAATAAAACTATTAGGCGGTAATATATCGTTCGCACAAAGCGTATGCATCATAGGCTAC ACGCTCTTCCCTCTTGTCCTCGCTGCTCTTATGACCGCGCTGAACCTGCATTGGATCGCACGCATACCTATCTAC ATCACCCTCATTGCATGGTCTCTCGCTGCGGGCGTAAGCATTCTAGGCGGTAGTGGCGTTGTTAAGAATCGAGTG ATACTAGCTGTTTATCCGCTCTTTATTTTTTATGGCGGCTTAGGCTGCCTATGCTTTATGAGCTAG |
| Transcript | >Hirsu2|6035 ATGGCATCCAGCACTCAAGGCAATAGCAACCCTTTGTTGGACAACGACGAACTAATTGATCCCGATGATGCCGAT TTGAACGACTTCGACGATCCTCTTACTCCCCGGGCTAATCAGTCAACACTCACGCGTGACACCGGCTCTGGACTT TCACCTCGGCCTCTAAGCCGGACTTATTTGACCTCATCAATTCCGGGCGAGGACCGAAGAGCTCCGCAGAACACA ATTGATGAGACGGCTTGGGAAACCCTTCGCCGCGATCTACTTGCTGTTTGGGCCAAGCTACGAGAAGTACTTTAT CCAAGCTACTTGCTTGACGGGACCATTTTTGAACCGACAGGGGGCCTTCGCGGCACATATTCTAATCTCCGTGGC GCCGGGATCGCTGGCACGAGAGAAGAGCTGACAGGTCTCGCCAGTCGTGTCGTAGACACTGAAGCGCTCTTGCAG TGCAATATAAGTCACAGCTTAAGGGACTGGGACTTATGGGGACCGCTTATTTTCTGTCTGCTTCTCAGTCTACTC CTGAGCTTCACCGCCCGCCCGCATCAAAAAGACGCAGTATTTAGCGGTGTCTTTGCTTTGGTTTGGCTCGGCGAA GCAGTGGTAACGCTCCAAATAAAACTATTAGGCGGTAATATATCGTTCGCACAAAGCGTATGCATCATAGGCTAC ACGCTCTTCCCTCTTGTCCTCGCTGCTCTTATGACCGCGCTGAACCTGCATTGGATCGCACGCATACCTATCTAC ATCACCCTCATTGCATGGTCTCTCGCTGCGGGCGTAAGCATTCTAGGCGGTAGTGGCGTTGTTAAGAATCGAGTG ATACTAGCTGTTTATCCGCTCTTTATTTTTTATGGCGGCTTAGGCTGCCTATGCTTTATGAGCTAG |
| Gene | >Hirsu2|6035 ATGGCATCCAGCACTCAAGGCAATAGCAACCCTTTGTTGGACAACGACGAACTAATTGATCCCGATGATGGTATG GTTATTCGGTCGTTACATGCCACATATATGCCACGCTCCCCCTGTCGACCTCGTCGGACCTGGAACTGATTTTGG TACTTCGCCTTAGCCGATTTGAACGACTTCGACGATCCTCTTACTCCCCGGGCTAATCAGTCAACACTCACGCGT GACACCGGCTCTGGACTTTCACCTCGGCCTCTAAGCCGGACTTATTTGACCTCATCAATTCCGGGCGAGGACCGA AGAGCTCCGCAGAACACAATTGATGAGACGGCTTGGGAAACCCTTCGCCGCGATCTACTTGCTGTTTGGGCCAAG CTACGAGAAGTACTTTATCCAAGCTACTTGCTTGACGGGACCATTTTTGAACCGACAGGGGGCCTTCGCGGCACA TATTCTAATCTCCGTGGCGCCGGGATCGCTGGCACGAGAGAAGAGCTGACAGGTCTCGCCAGTCGTGTCGTAGAC ACTGAAGCGCTCTTGCAGTGCAATATAAGTCACAGCTTAAGGGACTGGGACTTATGGGGACCGCTTATTTTCTGT CTGCTTCTCAGTCTACTCCTGAGCTTCACCGCCCGCCCGCATCAAAAAGACGCAGTATTTAGCGGTGTCTTTGCT TTGGTTTGGCTCGGCGAAGCAGTGGTAACGCTCCAAATAAAACTATTAGGCGGTAATATGTACGTTATAACCGCA ACCCGAAACTGCACTATCATCCTACAGACTCTCGTCTTGTCTACCCGCTGACGTTTGGCTGTCCTGCTACAAGAT CGTTCGCACAAAGCGTATGCATCATAGGCTACACGCTCTTCCCTCTTGTCCTCGCTGCTCTTATGACCGCGCTGA ACCTGCATTGGATCGCACGCATACCTATCTACATCACCCTCATTGCATGGTCTCTCGCTGCGGGCGTAAGCATTC TAGGCGGTAGTGGCGTTGTTAAGAATCGAGTGATACTAGCTGTTTATCCGCTCTTTATTTTTTATGGCGGCTTAG GCTGCCTATGCTTTATGAGCTAG |