Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6024
Gene name
LocationContig_304:8228..8911
Strand+
Gene length (bp)683
Transcript length (bp)549
Coding sequence length (bp)549
Protein length (aa) 183

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 1.1E-05 127 153

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 26 182 3.0E-15
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 37 182 2.0E-11
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 39 182 7.0E-11
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 60 182 1.0E-08
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 8 182 2.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 26 182 3.0E-15
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 37 182 2.0E-11
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 39 182 7.0E-11
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 60 182 1.0E-08
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 8 182 2.0E-08
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 119 182 3.0E-07
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6024
MPSLRQVILSLPLLGTGFVLGAVADAPPADIARDTIPPCVETSVYDESRACPSFLGVHNITIKQFQQWNNPSISD
KCVGLTPGQSYCVKVAVAEPPTPEPTSSTNLQKREELNAQPGTAPYCKRWRKVKKGDNCYDIAKEEDIDLPKFME
WNKGAGSCEDESDESSCKCLHLWLGYHACVKV*
Coding >Hirsu2|6024
ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC
GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC
TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGAACAACCCGTCCATCTCCGAC
AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT
ACTTCGTCTACGAACCTCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGG
CGCAAAGTCAAGAAGGGAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAG
TGGAACAAAGGAGCCGGCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGC
TATCATGCGTGCGTTAAAGTATAG
Transcript >Hirsu2|6024
ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC
GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC
TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGAACAACCCGTCCATCTCCGAC
AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT
ACTTCGTCTACGAACCTCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGG
CGCAAAGTCAAGAAGGGAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAG
TGGAACAAAGGAGCCGGCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGC
TATCATGCGTGCGTTAAAGTATAG
Gene >Hirsu2|6024
ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC
GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC
TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGGTAGGGCCTCTCTGCTGGAGC
GGACGTCCGGACGACGTCGTATGCCGCGAAAATAGGGCTGACTTATGCGGACAGAACAACCCGTCCATCTCCGAC
AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT
ACTTCGTCTACGAGTACGTAAGCACCCATACCGTCTACTGTCCCGGAGGAGAAAACTGATTATTCGGTATAGACC
TCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGGCGCAAAGTCAAGAAGG
GAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAGTGGAACAAAGGAGCCG
GCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGCTATCATGCGTGCGTTA
AAGTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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