Protein ID | Hirsu2|6024 |
Gene name | |
Location | Contig_304:8228..8911 |
Strand | + |
Gene length (bp) | 683 |
Transcript length (bp) | 549 |
Coding sequence length (bp) | 549 |
Protein length (aa) | 183 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01476 | LysM | LysM domain | 1.1E-05 | 127 | 153 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 26 | 182 | 3.0E-15 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 37 | 182 | 2.0E-11 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 39 | 182 | 7.0E-11 |
sp|D4AZ68|LYSM3_ARTBC | LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 | 60 | 182 | 1.0E-08 |
sp|D4B4P8|LYSM2_ARTBC | LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 | 8 | 182 | 2.0E-08 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 26 | 182 | 3.0E-15 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 37 | 182 | 2.0E-11 |
sp|D4ALG0|LYSM1_ARTBC | LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 | 39 | 182 | 7.0E-11 |
sp|D4AZ68|LYSM3_ARTBC | LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 | 60 | 182 | 1.0E-08 |
sp|D4B4P8|LYSM2_ARTBC | LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 | 8 | 182 | 2.0E-08 |
sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 119 | 182 | 3.0E-07 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0836 | 0.0484 | 0.9408 | 0.0525 | 0.027 | 0.0164 | 0.1338 | 0.1624 | 0.1134 | 0.0013 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 24 | 0.999546 |
Orthofinder run ID | 4 |
Orthogroup | 265 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6024 MPSLRQVILSLPLLGTGFVLGAVADAPPADIARDTIPPCVETSVYDESRACPSFLGVHNITIKQFQQWNNPSISD KCVGLTPGQSYCVKVAVAEPPTPEPTSSTNLQKREELNAQPGTAPYCKRWRKVKKGDNCYDIAKEEDIDLPKFME WNKGAGSCEDESDESSCKCLHLWLGYHACVKV* |
Coding | >Hirsu2|6024 ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGAACAACCCGTCCATCTCCGAC AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT ACTTCGTCTACGAACCTCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGG CGCAAAGTCAAGAAGGGAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAG TGGAACAAAGGAGCCGGCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGC TATCATGCGTGCGTTAAAGTATAG |
Transcript | >Hirsu2|6024 ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGAACAACCCGTCCATCTCCGAC AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT ACTTCGTCTACGAACCTCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGG CGCAAAGTCAAGAAGGGAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAG TGGAACAAAGGAGCCGGCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGC TATCATGCGTGCGTTAAAGTATAG |
Gene | >Hirsu2|6024 ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGGTAGGGCCTCTCTGCTGGAGC GGACGTCCGGACGACGTCGTATGCCGCGAAAATAGGGCTGACTTATGCGGACAGAACAACCCGTCCATCTCCGAC AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT ACTTCGTCTACGAGTACGTAAGCACCCATACCGTCTACTGTCCCGGAGGAGAAAACTGATTATTCGGTATAGACC TCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGGCGCAAAGTCAAGAAGG GAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAGTGGAACAAAGGAGCCG GCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGCTATCATGCGTGCGTTA AAGTATAG |