Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6024
Gene name
LocationContig_304:8228..8911
Strand+
Gene length (bp)683
Transcript length (bp)549
Coding sequence length (bp)549
Protein length (aa) 183

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 1.1E-05 127 153

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 26 182 3.0E-15
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 37 182 2.0E-11
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 39 182 7.0E-11
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 60 182 1.0E-08
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 8 182 2.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 26 182 3.0E-15
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 37 182 2.0E-11
sp|D4ALG0|LYSM1_ARTBC LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05157 PE=1 SV=1 39 182 7.0E-11
sp|D4AZ68|LYSM3_ARTBC LysM domain-containing protein ARB_01488 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01488 PE=3 SV=1 60 182 1.0E-08
sp|D4B4P8|LYSM2_ARTBC LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03438 PE=3 SV=1 8 182 2.0E-08
sp|D4B5F9|PGDA_ARTBC Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 119 182 3.0E-07
[Show less]

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.0836 0.0484 0.9408 0.0525 0.027 0.0164 0.1338 0.1624 0.1134 0.0013

SignalP

SignalP signal predicted Location Score
Yes 1 - 24 0.999546

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup265
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2459
Ophiocordyceps australis map64 (Brazil) OphauB2|4462
Ophiocordyceps australis map64 (Brazil) OphauB2|7698
Ophiocordyceps camponoti-floridani Ophcf2|02949
Ophiocordyceps camponoti-rufipedis Ophun1|7477
Ophiocordyceps kimflemingae Ophio5|3948
Ophiocordyceps subramaniannii Hirsu2|1076
Ophiocordyceps subramaniannii Hirsu2|3841
Ophiocordyceps subramaniannii Hirsu2|6024 (this protein)
Ophiocordyceps subramaniannii Hirsu2|8728
Ophiocordyceps subramaniannii Hirsu2|9191

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6024
MPSLRQVILSLPLLGTGFVLGAVADAPPADIARDTIPPCVETSVYDESRACPSFLGVHNITIKQFQQWNNPSISD
KCVGLTPGQSYCVKVAVAEPPTPEPTSSTNLQKREELNAQPGTAPYCKRWRKVKKGDNCYDIAKEEDIDLPKFME
WNKGAGSCEDESDESSCKCLHLWLGYHACVKV*
Coding >Hirsu2|6024
ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC
GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC
TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGAACAACCCGTCCATCTCCGAC
AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT
ACTTCGTCTACGAACCTCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGG
CGCAAAGTCAAGAAGGGAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAG
TGGAACAAAGGAGCCGGCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGC
TATCATGCGTGCGTTAAAGTATAG
Transcript >Hirsu2|6024
ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC
GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC
TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGAACAACCCGTCCATCTCCGAC
AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT
ACTTCGTCTACGAACCTCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGG
CGCAAAGTCAAGAAGGGAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAG
TGGAACAAAGGAGCCGGCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGC
TATCATGCGTGCGTTAAAGTATAG
Gene >Hirsu2|6024
ATGCCTTCACTCCGACAGGTTATCCTCTCGCTCCCCCTCCTAGGCACCGGGTTCGTGCTCGGGGCCGTCGCCGAC
GCGCCTCCCGCTGATATTGCCCGCGATACCATCCCTCCCTGCGTGGAGACGAGCGTCTACGACGAGTCCAGAGCC
TGCCCGTCCTTCCTTGGAGTCCATAATATCACCATTAAGCAGTTCCAGCAATGGGTAGGGCCTCTCTGCTGGAGC
GGACGTCCGGACGACGTCGTATGCCGCGAAAATAGGGCTGACTTATGCGGACAGAACAACCCGTCCATCTCCGAC
AAATGCGTAGGTCTGACCCCGGGCCAGTCCTACTGTGTCAAGGTCGCGGTGGCCGAGCCTCCCACCCCGGAGCCT
ACTTCGTCTACGAGTACGTAAGCACCCATACCGTCTACTGTCCCGGAGGAGAAAACTGATTATTCGGTATAGACC
TCCAGAAGCGCGAGGAACTGAACGCCCAGCCTGGGACCGCGCCTTATTGTAAACGTTGGCGCAAAGTCAAGAAGG
GAGATAATTGCTATGACATCGCCAAGGAGGAGGATATTGATCTGCCGAAGTTCATGGAGTGGAACAAAGGAGCCG
GCAGCTGCGAAGATGAATCGGACGAAAGCTCGTGCAAGTGCCTTCATTTATGGCTGGGCTATCATGCGTGCGTTA
AAGTATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail