Protein ID | Hirsu2|6017 |
Gene name | |
Location | Contig_3035:13..502 |
Strand | + |
Gene length (bp) | 489 |
Transcript length (bp) | 489 |
Coding sequence length (bp) | 489 |
Protein length (aa) | 163 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 9.4E-21 | 6 | 149 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 1 | 162 | 2.0E-55 |
sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 5 | 153 | 2.0E-48 |
sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 9 | 152 | 1.0E-43 |
sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 8 | 153 | 9.0E-40 |
sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 6 | 158 | 2.0E-37 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 1 | 162 | 2.0E-55 |
sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 5 | 153 | 2.0E-48 |
sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 9 | 152 | 1.0E-43 |
sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 8 | 153 | 9.0E-40 |
sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 6 | 158 | 2.0E-37 |
sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 1 | 155 | 1.0E-35 |
sp|Q5KQN0|CAX2_ORYSJ | Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 | 17 | 158 | 2.0E-35 |
sp|Q8L783|CAX5_ARATH | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 | 1 | 155 | 2.0E-35 |
sp|Q769E5|CAX1A_ORYSJ | Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 | 10 | 156 | 7.0E-35 |
sp|Q9LFZ8|CAX6_ARATH | Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 | 1 | 155 | 7.0E-32 |
sp|Q945S5|CAX4_ARATH | Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 | 5 | 158 | 1.0E-31 |
sp|Q6YXZ1|CAX4_ORYSJ | Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1 | 17 | 159 | 1.0E-30 |
sp|Q93Z81|CAX3_ARATH | Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1 | 17 | 151 | 2.0E-30 |
sp|Q39253|CAX1_ARATH | Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 | 17 | 159 | 5.0E-30 |
sp|Q5TKG3|CAX1B_ORYSJ | Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1 | 23 | 149 | 5.0E-28 |
sp|O34840|CHAA_BACSU | Ca(2+)/H(+) antiporter ChaA OS=Bacillus subtilis (strain 168) GN=chaA PE=1 SV=1 | 6 | 146 | 2.0E-27 |
sp|Q5KTQ9|CAX1C_ORYSJ | Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1 | 18 | 149 | 5.0E-24 |
sp|P42839|VNX1_YEAST | Low affinity vacuolar monovalent cation/H(+) antiporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VNX1 PE=1 SV=1 | 2 | 151 | 4.0E-15 |
sp|Q9P7B3|YI14_SCHPO | Putative cation exchanger C521.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC521.04c PE=1 SV=1 | 2 | 151 | 1.0E-12 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016021 | integral component of membrane | Yes |
GO:0055085 | transmembrane transport | Yes |
GO:0031224 | intrinsic component of membrane | No |
GO:0009987 | cellular process | No |
GO:0110165 | cellular anatomical entity | No |
GO:0051179 | localization | No |
GO:0005575 | cellular_component | No |
GO:0008150 | biological_process | No |
GO:0051234 | establishment of localization | No |
GO:0006810 | transport | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Transmembrane domain | 0.1594 | 0.0702 | 0.1549 | 0.643 | 0.3478 | 0.0123 | 0.2701 | 0.6991 | 0.3536 | 0.117 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 26 | 19 |
2 | 41 | 63 | 22 |
3 | 70 | 92 | 22 |
4 | 102 | 124 | 22 |
5 | 131 | 153 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 3249 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|6017 MSRLASVILLLLTTGLVAVCAEFLVGSIETVTKTSSVGEVFIGLIILPIVGNAAEHVTAITVAMKNKMDLAIGVA VGSSIQIAIFVTPLVVILGWIIGREMTLYFTLFETVSLFVSAFMVNFLVLDGRSNYLEGALLCAVYIIIAIVAFF FPSEQETSAWGS* |
Coding | >Hirsu2|6017 ATGTCGCGGCTGGCGTCGGTGATCCTGCTGCTGCTGACGACGGGCCTGGTGGCCGTCTGCGCCGAGTTCCTCGTC GGCTCGATCGAGACGGTGACCAAGACGTCGTCGGTCGGCGAGGTCTTCATCGGCCTCATCATCCTGCCCATCGTC GGCAACGCGGCCGAGCACGTGACGGCCATCACGGTGGCCATGAAGAACAAGATGGACCTGGCCATCGGCGTCGCC GTCGGCAGCTCCATCCAGATCGCCATCTTCGTCACCCCGCTCGTCGTCATCCTCGGCTGGATCATCGGCCGCGAG ATGACGCTCTACTTCACCCTCTTCGAGACCGTCAGCCTCTTCGTCTCGGCCTTCATGGTCAACTTCCTCGTCCTC GACGGCCGCAGCAACTACCTCGAGGGCGCGCTCCTGTGCGCCGTCTACATCATCATCGCCATCGTCGCCTTCTTC TTCCCGAGCGAGCAGGAGACGAGCGCGTGGGGGAGCTAG |
Transcript | >Hirsu2|6017 ATGTCGCGGCTGGCGTCGGTGATCCTGCTGCTGCTGACGACGGGCCTGGTGGCCGTCTGCGCCGAGTTCCTCGTC GGCTCGATCGAGACGGTGACCAAGACGTCGTCGGTCGGCGAGGTCTTCATCGGCCTCATCATCCTGCCCATCGTC GGCAACGCGGCCGAGCACGTGACGGCCATCACGGTGGCCATGAAGAACAAGATGGACCTGGCCATCGGCGTCGCC GTCGGCAGCTCCATCCAGATCGCCATCTTCGTCACCCCGCTCGTCGTCATCCTCGGCTGGATCATCGGCCGCGAG ATGACGCTCTACTTCACCCTCTTCGAGACCGTCAGCCTCTTCGTCTCGGCCTTCATGGTCAACTTCCTCGTCCTC GACGGCCGCAGCAACTACCTCGAGGGCGCGCTCCTGTGCGCCGTCTACATCATCATCGCCATCGTCGCCTTCTTC TTCCCGAGCGAGCAGGAGACGAGCGCGTGGGGGAGCTAG |
Gene | >Hirsu2|6017 ATGTCGCGGCTGGCGTCGGTGATCCTGCTGCTGCTGACGACGGGCCTGGTGGCCGTCTGCGCCGAGTTCCTCGTC GGCTCGATCGAGACGGTGACCAAGACGTCGTCGGTCGGCGAGGTCTTCATCGGCCTCATCATCCTGCCCATCGTC GGCAACGCGGCCGAGCACGTGACGGCCATCACGGTGGCCATGAAGAACAAGATGGACCTGGCCATCGGCGTCGCC GTCGGCAGCTCCATCCAGATCGCCATCTTCGTCACCCCGCTCGTCGTCATCCTCGGCTGGATCATCGGCCGCGAG ATGACGCTCTACTTCACCCTCTTCGAGACCGTCAGCCTCTTCGTCTCGGCCTTCATGGTCAACTTCCTCGTCCTC GACGGCCGCAGCAACTACCTCGAGGGCGCGCTCCTGTGCGCCGTCTACATCATCATCGCCATCGTCGCCTTCTTC TTCCCGAGCGAGCAGGAGACGAGCGCGTGGGGGAGCTAG |