© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6008 |
| Gene name | |
| Location | Contig_303:11904..12456 |
| Strand | - |
| Gene length (bp) | 552 |
| Transcript length (bp) | 492 |
| Coding sequence length (bp) | 492 |
| Protein length (aa) | 164 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1565 | 0.127 | 0.2025 | 0.5301 | 0.0577 | 0.0031 | 0.2519 | 0.82 | 0.4616 | 0.0023 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 30 | 18 |
| 2 | 45 | 67 | 22 |
| 3 | 74 | 96 | 22 |
| 4 | 116 | 138 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 559 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6008 MDFRVVGAGHAVLALLLLVELGLISHAVRIQSSSAELEPLSSINFMLFNTVWSILALAFVAVIPLVVSYAYHNII ALFVLAATAAFWLAGSIAVAAVLGTIGQQRKNIYSFTQPIVAFSFFIWALFTVLTSMEVLGLLKTAYYQHELSNP IELQRQRGSQADE* |
| Coding | >Hirsu2|6008 ATGGATTTTCGCGTCGTCGGCGCCGGCCACGCCGTCCTCGCCCTACTGCTCCTGGTTGAGCTGGGCCTTATCAGC CATGCCGTCCGCATTCAAAGCTCAAGTGCCGAACTCGAGCCCTTGTCCTCGATCAACTTCATGCTCTTCAACACC GTCTGGTCCATTCTGGCTCTGGCCTTCGTCGCCGTCATTCCTCTCGTCGTTTCCTACGCCTACCATAACATCATC GCCCTCTTCGTCCTCGCCGCCACGGCCGCCTTCTGGCTTGCCGGGTCCATCGCGGTCGCCGCCGTCCTCGGCACC ATCGGTCAGCAGCGAAAGAACATCTACTCCTTCACGCAGCCAATAGTCGCCTTTAGCTTCTTCATCTGGGCCTTG TTCACAGTCTTGACGTCCATGGAGGTGCTTGGCCTGCTGAAGACGGCCTACTATCAACACGAATTGTCCAACCCC ATAGAACTACAACGCCAACGCGGCTCGCAGGCTGACGAATAA |
| Transcript | >Hirsu2|6008 ATGGATTTTCGCGTCGTCGGCGCCGGCCACGCCGTCCTCGCCCTACTGCTCCTGGTTGAGCTGGGCCTTATCAGC CATGCCGTCCGCATTCAAAGCTCAAGTGCCGAACTCGAGCCCTTGTCCTCGATCAACTTCATGCTCTTCAACACC GTCTGGTCCATTCTGGCTCTGGCCTTCGTCGCCGTCATTCCTCTCGTCGTTTCCTACGCCTACCATAACATCATC GCCCTCTTCGTCCTCGCCGCCACGGCCGCCTTCTGGCTTGCCGGGTCCATCGCGGTCGCCGCCGTCCTCGGCACC ATCGGTCAGCAGCGAAAGAACATCTACTCCTTCACGCAGCCAATAGTCGCCTTTAGCTTCTTCATCTGGGCCTTG TTCACAGTCTTGACGTCCATGGAGGTGCTTGGCCTGCTGAAGACGGCCTACTATCAACACGAATTGTCCAACCCC ATAGAACTACAACGCCAACGCGGCTCGCAGGCTGACGAATAA |
| Gene | >Hirsu2|6008 ATGGATTTTCGCGTCGTCGGCGCCGGCCACGCCGTCCTCGCCCTACTGCTCCTGGTTGAGCTGGGCCTTATCAGC CATGGTAAGTGAGGATGCGCTCTCGATCGCCCTGTTCCTCGGCCTTGACGTCTGTGGATCCTAGCCGTCCGCATT CAAAGCTCAAGTGCCGAACTCGAGCCCTTGTCCTCGATCAACTTCATGCTCTTCAACACCGTCTGGTCCATTCTG GCTCTGGCCTTCGTCGCCGTCATTCCTCTCGTCGTTTCCTACGCCTACCATAACATCATCGCCCTCTTCGTCCTC GCCGCCACGGCCGCCTTCTGGCTTGCCGGGTCCATCGCGGTCGCCGCCGTCCTCGGCACCATCGGTCAGCAGCGA AAGAACATCTACTCCTTCACGCAGCCAATAGTCGCCTTTAGCTTCTTCATCTGGGCCTTGTTCACAGTCTTGACG TCCATGGAGGTGCTTGGCCTGCTGAAGACGGCCTACTATCAACACGAATTGTCCAACCCCATAGAACTACAACGC CAACGCGGCTCGCAGGCTGACGAATAA |