© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6007 |
| Gene name | |
| Location | Contig_303:7683..9025 |
| Strand | - |
| Gene length (bp) | 1342 |
| Transcript length (bp) | 1239 |
| Coding sequence length (bp) | 1239 |
| Protein length (aa) | 413 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06011 | TRP | Transient receptor potential (TRP) ion channel | 7.5E-60 | 170 | 412 |
| PF14558 | TRP_N | ML-like domain | 2.4E-41 | 26 | 165 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53121|FLC3_YEAST | Putative flavin carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC3 PE=1 SV=1 | 9 | 412 | 5.0E-71 |
| sp|Q08967|FLC1_YEAST | Flavin carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC1 PE=1 SV=1 | 1 | 412 | 5.0E-68 |
| sp|P39719|FLC2_YEAST | Flavin carrier protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC2 PE=1 SV=2 | 23 | 412 | 1.0E-67 |
| sp|Q08844|YO365_YEAST | Uncharacterized membrane protein YOR365C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR365C PE=1 SV=1 | 12 | 412 | 2.0E-55 |
| sp|Q09917|PKD2_SCHPO | TRP-like ion channel pkd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkd2 PE=1 SV=1 | 23 | 412 | 3.0E-46 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53121|FLC3_YEAST | Putative flavin carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC3 PE=1 SV=1 | 9 | 412 | 5.0E-71 |
| sp|Q08967|FLC1_YEAST | Flavin carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC1 PE=1 SV=1 | 1 | 412 | 5.0E-68 |
| sp|P39719|FLC2_YEAST | Flavin carrier protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC2 PE=1 SV=2 | 23 | 412 | 1.0E-67 |
| sp|Q08844|YO365_YEAST | Uncharacterized membrane protein YOR365C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR365C PE=1 SV=1 | 12 | 412 | 2.0E-55 |
| sp|Q09917|PKD2_SCHPO | TRP-like ion channel pkd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkd2 PE=1 SV=1 | 23 | 412 | 3.0E-46 |
| sp|O74520|YCPE_SCHPO | Uncharacterized membrane protein C663.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.14c PE=3 SV=2 | 33 | 300 | 1.0E-14 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.084 | 0.0866 | 0.1615 | 0.3516 | 0.1758 | 0.0681 | 0.7484 | 0.4424 | 0.4217 | 0.0134 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 21 | 0.999632 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 345 | 367 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 268 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6007 MQTLLRSSLLLAAALSPVAKGEKLLMSKSLNTCQEESGFSASLFDVIYTPENNSARINLDALSTIQGKVVIDLAV SVYGYPVFSTVIDPCKAQKEVKLEGLCPMVPGPIKSPFALTVPADTAKQIPGIAYTIPDLDAKVRVLVNLTSTAE SIACVEASISNGKTVDLPGVKAATVAIAGLAQIASVVLGALGHSNAAAHVASNSLSLFGYFQAVAIVGLTGVRLP PIVEAWTMNFQWSMGIIRGVHTQDFLTWYQRSTGGTPAKILSSLSNLSVQVAKRSLETASDVVRSPMVPRTPVPA PAAVTSISSTAGLFRRGNIMTGSGSYVVYGLQRVAFKSKIETTNLFMTGLIFFCSLMAAAAFIVMVSKGICELCA KKKWCGKFSSFRHDWLTILKGSLAKVALVLFPQITIL* |
| Coding | >Hirsu2|6007 ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGA |
| Transcript | >Hirsu2|6007 ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGA |
| Gene | >Hirsu2|6007 ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGTCTCTGGGAATTCACTCAGGCTGACTCGCCCGCCGAA CTGGTTCTTGCCGTCTTTTTCTTACTTGGCCCTATACTTATACTCGCCTGGGGAGCTTTTCAGGTGA |