Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|6007
Gene name
LocationContig_303:7683..9025
Strand-
Gene length (bp)1342
Transcript length (bp)1239
Coding sequence length (bp)1239
Protein length (aa) 413

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06011 TRP Transient receptor potential (TRP) ion channel 3.4E-60 170 412
PF14558 TRP_N ML-like domain 1.3E-41 25 165

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P53121|FLC3_YEAST Putative flavin carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC3 PE=1 SV=1 9 412 5.0E-71
sp|Q08967|FLC1_YEAST Flavin carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC1 PE=1 SV=1 1 412 5.0E-68
sp|P39719|FLC2_YEAST Flavin carrier protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC2 PE=1 SV=2 23 412 1.0E-67
sp|Q08844|YO365_YEAST Uncharacterized membrane protein YOR365C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR365C PE=1 SV=1 12 412 2.0E-55
sp|Q09917|PKD2_SCHPO TRP-like ion channel pkd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkd2 PE=1 SV=1 23 412 3.0E-46
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Swissprot ID Swissprot Description Start End E-value
sp|P53121|FLC3_YEAST Putative flavin carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC3 PE=1 SV=1 9 412 5.0E-71
sp|Q08967|FLC1_YEAST Flavin carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC1 PE=1 SV=1 1 412 5.0E-68
sp|P39719|FLC2_YEAST Flavin carrier protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC2 PE=1 SV=2 23 412 1.0E-67
sp|Q08844|YO365_YEAST Uncharacterized membrane protein YOR365C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR365C PE=1 SV=1 12 412 2.0E-55
sp|Q09917|PKD2_SCHPO TRP-like ion channel pkd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkd2 PE=1 SV=1 23 412 3.0E-46
sp|O74520|YCPE_SCHPO Uncharacterized membrane protein C663.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.14c PE=3 SV=2 33 300 1.0E-14
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

Domain # Start End Length
1 345 367 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|6007
MQTLLRSSLLLAAALSPVAKGEKLLMSKSLNTCQEESGFSASLFDVIYTPENNSARINLDALSTIQGKVVIDLAV
SVYGYPVFSTVIDPCKAQKEVKLEGLCPMVPGPIKSPFALTVPADTAKQIPGIAYTIPDLDAKVRVLVNLTSTAE
SIACVEASISNGKTVDLPGVKAATVAIAGLAQIASVVLGALGHSNAAAHVASNSLSLFGYFQAVAIVGLTGVRLP
PIVEAWTMNFQWSMGIIRGVHTQDFLTWYQRSTGGTPAKILSSLSNLSVQVAKRSLETASDVVRSPMVPRTPVPA
PAAVTSISSTAGLFRRGNIMTGSGSYVVYGLQRVAFKSKIETTNLFMTGLIFFCSLMAAAAFIVMVSKGICELCA
KKKWCGKFSSFRHDWLTILKGSLAKVALVLFPQITIL*
Coding >Hirsu2|6007
ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC
ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC
GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG
TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC
CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT
CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG
AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG
GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC
GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC
CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC
CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG
GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG
CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG
TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT
ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC
AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA
GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGA
Transcript >Hirsu2|6007
ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC
ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC
GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG
TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC
CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT
CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG
AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG
GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC
GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC
CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC
CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG
GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG
CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG
TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT
ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC
AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA
GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGA
Gene >Hirsu2|6007
ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC
ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC
GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG
TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC
CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT
CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG
AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG
GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC
GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC
CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC
CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG
GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG
CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG
TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT
ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC
AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA
GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGTCTCTGGGAATTCACTCAGGCTGACTCGCCCGCCGAA
CTGGTTCTTGCCGTCTTTTTCTTACTTGGCCCTATACTTATACTCGCCTGGGGAGCTTTTCAGGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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