Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|6007
Gene name
Location	Contig_303:7683..9025
Strand	-
Gene length (bp)	1342
Transcript length (bp)	1239
Coding sequence length (bp)	1239
Protein length (aa)	413

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF06011	TRP	Transient receptor potential (TRP) ion channel	7.5E-60	170	412
PF14558	TRP_N	ML-like domain	2.4E-41	26	165

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53121\|FLC3_YEAST	Putative flavin carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC3 PE=1 SV=1	9	412	5.0E-71
sp\|Q08967\|FLC1_YEAST	Flavin carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC1 PE=1 SV=1	1	412	5.0E-68
sp\|P39719\|FLC2_YEAST	Flavin carrier protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC2 PE=1 SV=2	23	412	1.0E-67
sp\|Q08844\|YO365_YEAST	Uncharacterized membrane protein YOR365C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR365C PE=1 SV=1	12	412	2.0E-55
sp\|Q09917\|PKD2_SCHPO	TRP-like ion channel pkd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkd2 PE=1 SV=1	23	412	3.0E-46

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53121\|FLC3_YEAST	Putative flavin carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC3 PE=1 SV=1	9	412	5.0E-71
sp\|Q08967\|FLC1_YEAST	Flavin carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC1 PE=1 SV=1	1	412	5.0E-68
sp\|P39719\|FLC2_YEAST	Flavin carrier protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLC2 PE=1 SV=2	23	412	1.0E-67
sp\|Q08844\|YO365_YEAST	Uncharacterized membrane protein YOR365C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR365C PE=1 SV=1	12	412	2.0E-55
sp\|Q09917\|PKD2_SCHPO	TRP-like ion channel pkd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkd2 PE=1 SV=1	23	412	3.0E-46
sp\|O74520\|YCPE_SCHPO	Uncharacterized membrane protein C663.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.14c PE=3 SV=2	33	300	1.0E-14

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	345	367	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|6007 MQTLLRSSLLLAAALSPVAKGEKLLMSKSLNTCQEESGFSASLFDVIYTPENNSARINLDALSTIQGKVVIDLAV SVYGYPVFSTVIDPCKAQKEVKLEGLCPMVPGPIKSPFALTVPADTAKQIPGIAYTIPDLDAKVRVLVNLTSTAE SIACVEASISNGKTVDLPGVKAATVAIAGLAQIASVVLGALGHSNAAAHVASNSLSLFGYFQAVAIVGLTGVRLP PIVEAWTMNFQWSMGIIRGVHTQDFLTWYQRSTGGTPAKILSSLSNLSVQVAKRSLETASDVVRSPMVPRTPVPA PAAVTSISSTAGLFRRGNIMTGSGSYVVYGLQRVAFKSKIETTNLFMTGLIFFCSLMAAAAFIVMVSKGICELCA KKKWCGKFSSFRHDWLTILKGSLAKVALVLFPQITIL*
Coding	>Hirsu2\|6007 ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGA
Transcript	>Hirsu2\|6007 ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGA
Gene	>Hirsu2\|6007 ATGCAAACACTTCTTCGGTCGTCGCTGCTGCTGGCGGCAGCCCTATCGCCGGTAGCAAAGGGCGAGAAGCTGCTC ATGTCCAAGTCCCTGAACACTTGCCAGGAGGAGTCGGGCTTCTCAGCCTCCCTGTTCGACGTCATCTACACACCC GAGAACAACTCGGCACGCATCAATCTAGATGCCCTCTCCACGATACAAGGCAAAGTCGTGATTGACCTTGCGGTG TCTGTCTACGGCTATCCGGTCTTCAGCACCGTCATCGATCCCTGCAAGGCACAAAAGGAGGTCAAGCTCGAGGGC CTCTGCCCCATGGTTCCGGGCCCGATCAAGTCCCCCTTCGCTCTCACCGTACCGGCAGACACGGCAAAGCAGATT CCCGGTATCGCCTATACTATCCCCGACCTTGATGCCAAGGTCAGGGTTCTGGTGAACCTCACATCCACGGCGGAG AGCATAGCCTGCGTTGAGGCTTCCATCTCGAACGGCAAGACGGTCGATTTGCCGGGCGTGAAGGCCGCCACAGTG GCCATCGCCGGCCTGGCCCAGATCGCGTCCGTCGTGCTCGGCGCGCTCGGCCACTCCAACGCAGCCGCCCATGTC GCCTCCAACTCGCTCTCGCTCTTTGGGTATTTCCAAGCCGTCGCCATCGTCGGGCTGACGGGGGTCCGTCTCCCC CCTATCGTCGAAGCATGGACCATGAACTTTCAGTGGTCGATGGGAATTATTCGTGGCGTCCACACGCAGGACTTC CTTACGTGGTATCAGCGATCCACGGGCGGGACGCCGGCAAAGATACTGAGCTCGTTGTCGAATCTCTCTGTGCAG GTCGCCAAGCGATCTCTCGAAACAGCCAGCGACGTGGTTCGAAGCCCAATGGTGCCGAGGACGCCTGTTCCCGCG CCGGCCGCTGTCACCTCCATCTCCTCCACGGCTGGCTTGTTCAGACGCGGCAACATCATGACTGGTTCGGGCTCG TACGTCGTCTACGGATTGCAGCGCGTCGCTTTCAAGTCCAAGATCGAGACGACCAACCTGTTTATGACCGGCCTT ATCTTCTTCTGCAGCCTTATGGCGGCCGCCGCTTTCATCGTCATGGTCTCGAAAGGGATTTGCGAGCTCTGTGCC AAGAAGAAGTGGTGTGGCAAGTTTAGCAGCTTCCGGCACGACTGGCTCACCATTCTCAAAGGCAGCCTTGCCAAA GTGGCCTTGGTTCTCTTCCCTCAGATCACGATTCTGTGTCTCTGGGAATTCACTCAGGCTGACTCGCCCGCCGAA CTGGTTCTTGCCGTCTTTTTCTTACTTGGCCCTATACTTATACTCGCCTGGGGAGCTTTTCAGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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