© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6004 |
| Gene name | |
| Location | Contig_3029:70..1346 |
| Strand | - |
| Gene length (bp) | 1276 |
| Transcript length (bp) | 1209 |
| Coding sequence length (bp) | 1209 |
| Protein length (aa) | 403 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10309 | NCBP3 | Nuclear cap-binding protein subunit 3 | 8.6E-18 | 49 | 103 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74460|YCGG_SCHPO | Uncharacterized protein C16C4.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC16C4.16c PE=4 SV=2 | 34 | 186 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000340 | RNA 7-methylguanosine cap binding | Yes |
| GO:0003729 | mRNA binding | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003723 | RNA binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| GO:0000339 | RNA cap binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6004 MGDARDIGAQMLFTFSADDILCSEETGEPGEVSEALSPKDGAGELKTVVPSKIYIRGLESLHTDDLEAYLRMHCG AAYRIEWIDDTSANLVFGSDPTAREAIESLSSVAITNAKAIAVGELLPAKPFSGRPDISLHVRFALQSDKKRAGS AIRSRYYLLHPEHDPGEKRRGRRDNRHYRDRGGDRRRDDAKRDGSGIYGTPTYEASMYDDVPQSTERRRYSDLEH RSETYVRHNHGKELFRGRPALRDRSASPRRLDDGQEHEGILMTSRSNRLRARSITRRLSTINRAKELFPRRSSDR SGQLSRLENCIGTASLREEDMPNIVTCPDTPPAGVFSIRGLASQRLDRQSDFVIKGQAKSAKELFPDKLGSKNVG KELPEVGRQDPGKRPRTCFRKRGEDIL* |
| Coding | >Hirsu2|6004 ATGGGCGATGCCCGCGATATTGGTGCACAAATGCTCTTTACTTTTTCAGCTGATGACATACTGTGTTCAGAAGAA ACAGGCGAGCCTGGTGAAGTGAGCGAGGCCCTTTCGCCCAAAGATGGCGCGGGCGAGCTCAAAACAGTCGTCCCA TCGAAAATTTACATTCGAGGGTTGGAATCTTTGCATACAGACGACCTAGAGGCTTATTTGAGGATGCACTGTGGC GCCGCATATCGAATTGAATGGATAGACGACACATCTGCCAATCTTGTGTTTGGCTCGGACCCTACAGCCCGCGAG GCTATTGAATCCCTGAGCTCGGTTGCCATAACCAACGCAAAAGCCATCGCCGTCGGGGAGCTCCTCCCCGCTAAG CCGTTTAGTGGCAGGCCAGATATATCACTGCATGTGCGCTTTGCTCTCCAAAGTGATAAAAAGAGGGCTGGCTCC GCAATTCGAAGTCGTTATTACCTTCTCCACCCCGAACATGATCCTGGGGAAAAGCGGCGTGGTCGTCGTGACAAT CGCCACTACAGAGACAGAGGTGGGGACCGTCGCAGAGACGATGCGAAGAGAGACGGCTCGGGCATCTACGGGACC CCGACGTACGAGGCGAGCATGTACGACGATGTACCACAGTCAACTGAGAGGAGGAGATACTCAGACCTGGAACAT CGTTCAGAAACATATGTCCGTCACAATCACGGCAAAGAGCTGTTTAGGGGCCGACCGGCTTTGAGGGATCGATCG GCCTCGCCGCGCCGACTTGATGACGGTCAGGAACATGAGGGTATCCTCATGACATCGCGGAGTAATAGACTCCGG GCACGTTCCATAACACGTCGCCTCTCTACCATCAATCGTGCCAAGGAGCTGTTTCCCAGAAGGTCGTCAGACAGA AGTGGGCAGCTAAGTCGGCTAGAAAACTGCATCGGCACTGCCAGCCTGCGCGAGGAAGACATGCCGAATATTGTG ACATGCCCCGACACCCCGCCGGCCGGCGTGTTCAGCATTCGTGGCCTCGCAAGTCAGCGACTGGACCGCCAATCC GATTTCGTTATCAAGGGACAAGCAAAAAGCGCAAAAGAGCTGTTTCCCGATAAGCTGGGTAGTAAAAATGTCGGG AAAGAGTTGCCGGAAGTGGGCCGCCAAGACCCAGGCAAAAGGCCCAGGACCTGTTTCCGTAAACGAGGCGAGGAC ATACTATGA |
| Transcript | >Hirsu2|6004 ATGGGCGATGCCCGCGATATTGGTGCACAAATGCTCTTTACTTTTTCAGCTGATGACATACTGTGTTCAGAAGAA ACAGGCGAGCCTGGTGAAGTGAGCGAGGCCCTTTCGCCCAAAGATGGCGCGGGCGAGCTCAAAACAGTCGTCCCA TCGAAAATTTACATTCGAGGGTTGGAATCTTTGCATACAGACGACCTAGAGGCTTATTTGAGGATGCACTGTGGC GCCGCATATCGAATTGAATGGATAGACGACACATCTGCCAATCTTGTGTTTGGCTCGGACCCTACAGCCCGCGAG GCTATTGAATCCCTGAGCTCGGTTGCCATAACCAACGCAAAAGCCATCGCCGTCGGGGAGCTCCTCCCCGCTAAG CCGTTTAGTGGCAGGCCAGATATATCACTGCATGTGCGCTTTGCTCTCCAAAGTGATAAAAAGAGGGCTGGCTCC GCAATTCGAAGTCGTTATTACCTTCTCCACCCCGAACATGATCCTGGGGAAAAGCGGCGTGGTCGTCGTGACAAT CGCCACTACAGAGACAGAGGTGGGGACCGTCGCAGAGACGATGCGAAGAGAGACGGCTCGGGCATCTACGGGACC CCGACGTACGAGGCGAGCATGTACGACGATGTACCACAGTCAACTGAGAGGAGGAGATACTCAGACCTGGAACAT CGTTCAGAAACATATGTCCGTCACAATCACGGCAAAGAGCTGTTTAGGGGCCGACCGGCTTTGAGGGATCGATCG GCCTCGCCGCGCCGACTTGATGACGGTCAGGAACATGAGGGTATCCTCATGACATCGCGGAGTAATAGACTCCGG GCACGTTCCATAACACGTCGCCTCTCTACCATCAATCGTGCCAAGGAGCTGTTTCCCAGAAGGTCGTCAGACAGA AGTGGGCAGCTAAGTCGGCTAGAAAACTGCATCGGCACTGCCAGCCTGCGCGAGGAAGACATGCCGAATATTGTG ACATGCCCCGACACCCCGCCGGCCGGCGTGTTCAGCATTCGTGGCCTCGCAAGTCAGCGACTGGACCGCCAATCC GATTTCGTTATCAAGGGACAAGCAAAAAGCGCAAAAGAGCTGTTTCCCGATAAGCTGGGTAGTAAAAATGTCGGG AAAGAGTTGCCGGAAGTGGGCCGCCAAGACCCAGGCAAAAGGCCCAGGACCTGTTTCCGTAAACGAGGCGAGGAC ATACTATGA |
| Gene | >Hirsu2|6004 ATGGGCGATGCCCGCGATATTGGTGCACAAATGCTCTTTACTTTTTCAGCTGATGACATACTGGTTAGTTAAGTC CGTCCGTGGCGTTTTTTTTTTTTTGCTTTATTCTGACAAACGCCTTACCTCGCAGTGTTCAGAAGAAACAGGCGA GCCTGGTGAAGTGAGCGAGGCCCTTTCGCCCAAAGATGGCGCGGGCGAGCTCAAAACAGTCGTCCCATCGAAAAT TTACATTCGAGGGTTGGAATCTTTGCATACAGACGACCTAGAGGCTTATTTGAGGATGCACTGTGGCGCCGCATA TCGAATTGAATGGATAGACGACACATCTGCCAATCTTGTGTTTGGCTCGGACCCTACAGCCCGCGAGGCTATTGA ATCCCTGAGCTCGGTTGCCATAACCAACGCAAAAGCCATCGCCGTCGGGGAGCTCCTCCCCGCTAAGCCGTTTAG TGGCAGGCCAGATATATCACTGCATGTGCGCTTTGCTCTCCAAAGTGATAAAAAGAGGGCTGGCTCCGCAATTCG AAGTCGTTATTACCTTCTCCACCCCGAACATGATCCTGGGGAAAAGCGGCGTGGTCGTCGTGACAATCGCCACTA CAGAGACAGAGGTGGGGACCGTCGCAGAGACGATGCGAAGAGAGACGGCTCGGGCATCTACGGGACCCCGACGTA CGAGGCGAGCATGTACGACGATGTACCACAGTCAACTGAGAGGAGGAGATACTCAGACCTGGAACATCGTTCAGA AACATATGTCCGTCACAATCACGGCAAAGAGCTGTTTAGGGGCCGACCGGCTTTGAGGGATCGATCGGCCTCGCC GCGCCGACTTGATGACGGTCAGGAACATGAGGGTATCCTCATGACATCGCGGAGTAATAGACTCCGGGCACGTTC CATAACACGTCGCCTCTCTACCATCAATCGTGCCAAGGAGCTGTTTCCCAGAAGGTCGTCAGACAGAAGTGGGCA GCTAAGTCGGCTAGAAAACTGCATCGGCACTGCCAGCCTGCGCGAGGAAGACATGCCGAATATTGTGACATGCCC CGACACCCCGCCGGCCGGCGTGTTCAGCATTCGTGGCCTCGCAAGTCAGCGACTGGACCGCCAATCCGATTTCGT TATCAAGGGACAAGCAAAAAGCGCAAAAGAGCTGTTTCCCGATAAGCTGGGTAGTAAAAATGTCGGGAAAGAGTT GCCGGAAGTGGGCCGCCAAGACCCAGGCAAAAGGCCCAGGACCTGTTTCCGTAAACGAGGCGAGGACATACTATG A |