© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|6001 |
| Gene name | |
| Location | Contig_3022:62..1450 |
| Strand | + |
| Gene length (bp) | 1388 |
| Transcript length (bp) | 1260 |
| Coding sequence length (bp) | 1260 |
| Protein length (aa) | 420 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00999 | Na_H_Exchanger | Sodium/hydrogen exchanger family | 2.1E-16 | 135 | 304 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42701|NAH2_ZYGRO | Na(+)/H(+) antiporter 2 OS=Zygosaccharomyces rouxii GN=SOD22 PE=3 SV=1 | 133 | 316 | 2.0E-31 |
| sp|Q99173|NAH1_ZYGRO | Na(+)/H(+) antiporter 1 OS=Zygosaccharomyces rouxii GN=SOD2 PE=3 SV=1 | 133 | 380 | 2.0E-30 |
| sp|Q99271|NAH1_YEAST | Na(+)/H(+) antiporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NHA1 PE=1 SV=1 | 133 | 309 | 1.0E-28 |
| sp|O14123|NAH2_SCHPO | Probable Na(+)/H(+) antiporter C3A11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sod22 PE=1 SV=1 | 130 | 309 | 7.0E-27 |
| sp|P36606|NAH_SCHPO | Na(+)/H(+) antiporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sod2 PE=1 SV=1 | 133 | 337 | 1.0E-21 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006812 | cation transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0015299 | solute:proton antiporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015291 | secondary active transmembrane transporter activity | No |
| GO:0015298 | solute:cation antiporter activity | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0015297 | antiporter activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.2895 | 0.1328 | 0.0443 | 0.6751 | 0.637 | 0.0124 | 0.5458 | 0.5196 | 0.2718 | 0.0457 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 174 | 191 | 17 |
| 2 | 206 | 225 | 19 |
| 3 | 238 | 260 | 22 |
| 4 | 284 | 306 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 439 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|6001 MAAMWLATSGLVWAVARPAGGLLHALAVGACVTPTDPVLSAVIVKGKFADGNIPRDLQDLIVADSRRPLTAPAPA AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLVGTCGLLGTDDVLACFIAG NTFTWDDWFRLRTKDDSLQPTIDMLLNVAIFLWYGASLPWADFARNDVPRLDTGRLVLLGLLVLLLRRLPWVFAM HRWIHQIRQVRQAVFVGFFGPIGVSAVFYLFLSLRFIDDHLTGDDGVPRPDVEHLGDTIRVIVWFLVVCSIVVHG LSIPLGKLGYLAPRTFGLVRADSLSEEPLTGRSRTRSIFGRWLGRKSNGHGPALPAHLGRDGVPPGAWDVGSEAS ASCPAPDGILPPSSVGHGDVGPTTGTPPRREIRLPDESHVAGRL* |
| Coding | >Hirsu2|6001 ATGGCCGCCATGTGGCTGGCGACGAGCGGGCTGGTGTGGGCCGTGGCCCGGCCGGCCGGCGGGCTGCTGCATGCG CTGGCCGTCGGCGCCTGCGTCACGCCGACGGACCCGGTGCTGTCGGCCGTCATCGTCAAGGGCAAGTTCGCCGAC GGCAACATCCCGCGCGACCTGCAGGACCTCATCGTGGCCGATTCACGGCGGCCGCTGACGGCGCCGGCGCCGGCG GCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNTTCCTCGTCGGCACCTGCGGCCTGCTCGGCACCGACGACGTCCTCGCCTGCTTCATCGCCGGC AACACCTTCACCTGGGACGACTGGTTCCGCCTGCGCACCAAGGACGACTCGCTGCAGCCCACCATCGACATGCTG CTCAACGTCGCCATCTTCCTCTGGTATGGCGCCTCCCTGCCCTGGGCCGACTTCGCCCGCAACGACGTCCCGCGC CTCGACACCGGCCGCCTCGTCCTCCTCGGCCTGCTCGTCCTGCTGCTGCGCCGCCTGCCCTGGGTCTTCGCCATG CACCGCTGGATTCACCAGATCCGCCAGGTCCGCCAGGCCGTCTTCGTCGGCTTCTTCGGCCCCATCGGCGTCTCC GCCGTCTTCTACCTCTTCCTCAGCCTCCGCTTCATCGACGACCACCTGACCGGCGACGACGGCGTCCCCAGGCCC GACGTCGAGCACCTCGGCGACACCATCCGCGTCATCGTCTGGTTCTTGGTCGTCTGCAGCATCGTCGTCCACGGG CTCAGCATCCCGCTCGGCAAACTCGGTTACCTTGCGCCCCGCACCTTCGGCCTCGTCAGGGCCGACAGCTTGAGC GAGGAGCCGCTGACGGGCCGCTCGCGCACGAGGTCCATCTTCGGGAGGTGGCTCGGCCGCAAGAGCAACGGCCAC GGACCTGCCCTGCCGGCCCACCTCGGCCGAGACGGCGTCCCGCCCGGCGCTTGGGACGTCGGCTCCGAGGCGAGC GCCTCTTGTCCCGCGCCGGACGGCATTCTCCCGCCCAGCTCCGTCGGTCACGGGGATGTCGGTCCGACGACGGGG ACGCCACCCCGGCGCGAGATACGGCTTCCAGATGAATCGCACGTGGCGGGCCGTCTCTGA |
| Transcript | >Hirsu2|6001 ATGGCCGCCATGTGGCTGGCGACGAGCGGGCTGGTGTGGGCCGTGGCCCGGCCGGCCGGCGGGCTGCTGCATGCG CTGGCCGTCGGCGCCTGCGTCACGCCGACGGACCCGGTGCTGTCGGCCGTCATCGTCAAGGGCAAGTTCGCCGAC GGCAACATCCCGCGCGACCTGCAGGACCTCATCGTGGCCGATTCACGGCGGCCGCTGACGGCGCCGGCGCCGGCG GCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNTTCCTCGTCGGCACCTGCGGCCTGCTCGGCACCGACGACGTCCTCGCCTGCTTCATCGCCGGC AACACCTTCACCTGGGACGACTGGTTCCGCCTGCGCACCAAGGACGACTCGCTGCAGCCCACCATCGACATGCTG CTCAACGTCGCCATCTTCCTCTGGTATGGCGCCTCCCTGCCCTGGGCCGACTTCGCCCGCAACGACGTCCCGCGC CTCGACACCGGCCGCCTCGTCCTCCTCGGCCTGCTCGTCCTGCTGCTGCGCCGCCTGCCCTGGGTCTTCGCCATG CACCGCTGGATTCACCAGATCCGCCAGGTCCGCCAGGCCGTCTTCGTCGGCTTCTTCGGCCCCATCGGCGTCTCC GCCGTCTTCTACCTCTTCCTCAGCCTCCGCTTCATCGACGACCACCTGACCGGCGACGACGGCGTCCCCAGGCCC GACGTCGAGCACCTCGGCGACACCATCCGCGTCATCGTCTGGTTCTTGGTCGTCTGCAGCATCGTCGTCCACGGG CTCAGCATCCCGCTCGGCAAACTCGGTTACCTTGCGCCCCGCACCTTCGGCCTCGTCAGGGCCGACAGCTTGAGC GAGGAGCCGCTGACGGGCCGCTCGCGCACGAGGTCCATCTTCGGGAGGTGGCTCGGCCGCAAGAGCAACGGCCAC GGACCTGCCCTGCCGGCCCACCTCGGCCGAGACGGCGTCCCGCCCGGCGCTTGGGACGTCGGCTCCGAGGCGAGC GCCTCTTGTCCCGCGCCGGACGGCATTCTCCCGCCCAGCTCCGTCGGTCACGGGGATGTCGGTCCGACGACGGGG ACGCCACCCCGGCGCGAGATACGGCTTCCAGATGAATCGCACGTGGCGGGCCGTCTCTGA |
| Gene | >Hirsu2|6001 ATGGCCGCCATGTGGCTGGCGACGAGCGGGCTGGTGTGGGCCGTGGCCCGGCCGGCCGGCGGGCTGCTGCATGCG CTGGCCGTCGGCGCCTGCGTCACGCCGACGGACCCGGTGCTGTCGGCCGTCATCGTCAAGGGCAAGTTCGCCGAC GGCAACATCCCGCGCGACCTGCAGGACCTCATCGTGGCCGAGTCCGGCACCAACGACGGGCTCGGCTACCCCTTC CTCTTCTTCGCCCTCTACCTCATCAAGTTCACGGCGGCCGCTGACGGCGCCGGCGCCGGCGGCGNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT CCTCGTCGGCACCTGCGGCCTGCTCGGCACCGACGACGTCCTCGCCTGCTTCATCGCCGGCAACACCTTCACCTG GGACGACTGGTTCCGCCTGCGCACCAAGGACGACTCGCTGCAGCCCACCATCGACATGCTGCTCAACGTCGCCAT CTTCCTCTGGTATGGCGCCTCCCTGCCCTGGGCCGACTTCGCCCGCAACGACGTCCCGCGCCTCGACACCGGCCG CCTCGTCCTCCTCGGCCTGCTCGTCCTGCTGCTGCGCCGCCTGCCCTGGGTCTTCGCCATGCACCGCTGGATTCA CCAGATCCGCCAGGTCCGCCAGGCCGTCTTCGTCGGCTTCTTCGGCCCCATCGGCGTCTCCGCCGTCTTCTACCT CTTCCTCAGCCTCCGCTTCATCGACGACCACCTGACCGGCGACGACGGCGTCCCCAGGCCCGACGTCGAGCACCT CGGCGACACCATCCGCGTCATCGTCTGGTTCTTGGTCGTCTGCAGCATCGTGAGTCGGCTGCCGCCCGTTACCCT CCTTCTGCCCAGCCGGTCCTGACCTTTCCACGCTTGCGCAGGTCGTCCACGGGCTCAGCATCCCGCTCGGCAAAC TCGGTTACCTTGCGCCCCGCACCTTCGGCCTCGTCAGGGCCGACAGCTTGAGCGAGGAGCCGCTGACGGGCCGCT CGCGCACGAGGTCCATCTTCGGGAGGTGGCTCGGCCGCAAGAGCAACGGCCACGGACCTGCCCTGCCGGCCCACC TCGGCCGAGACGGCGTCCCGCCCGGCGCTTGGGACGTCGGCTCCGAGGCGAGCGCCTCTTGTCCCGCGCCGGACG GCATTCTCCCGCCCAGCTCCGTCGGTCACGGGGATGTCGGTCCGACGACGGGGACGCCACCCCGGCGCGAGATAC GGCTTCCAGATGAATCGCACGTGGCGGGCCGTCTCTGA |