Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|5998
Gene name
Location	Contig_302:22458..24030
Strand	+
Gene length (bp)	1572
Transcript length (bp)	1509
Coding sequence length (bp)	1509
Protein length (aa)	503

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF11931	DUF3449	Domain of unknown function (DUF3449)	9.0E-78	314	501
PF16837	SF3A3	Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9	1.8E-24	125	204
PF12108	SF3a60_bindingd	Splicing factor SF3a60 binding domain	5.9E-12	73	99
PF12874	zf-met	Zinc-finger of C2H2 type	7.2E-06	247	270
PF12171	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	6.0E-07	247	270

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O59706\|SAP61_SCHPO	Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap61 PE=1 SV=1	3	502	5.0E-124
sp\|O46106\|NOI_DROME	Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1	3	502	1.0E-69
sp\|P19736\|PRP9_YEAST	Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP9 PE=1 SV=1	38	502	7.0E-46
sp\|Q9D554\|SF3A3_MOUSE	Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=1 SV=2	379	502	2.0E-40
sp\|Q12874\|SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	379	502	2.0E-40

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O59706\|SAP61_SCHPO	Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap61 PE=1 SV=1	3	502	5.0E-124
sp\|O46106\|NOI_DROME	Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1	3	502	1.0E-69
sp\|P19736\|PRP9_YEAST	Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP9 PE=1 SV=1	38	502	7.0E-46
sp\|Q9D554\|SF3A3_MOUSE	Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=1 SV=2	379	502	2.0E-40
sp\|Q12874\|SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	379	502	2.0E-40
sp\|Q9D554\|SF3A3_MOUSE	Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=1 SV=2	3	236	1.0E-26
sp\|Q12874\|SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	3	236	2.0E-26

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 41	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|5998 MLVAEDQRYIHEDLERLEQAIADRAREEHKHIRNQLNQGHEIAQLLEQIQQQCSNLVAIFEDDAGSMAREIEQIE TGDPFGQFYSQLNELREHHSRYPNEQAENSEQRYKARRVADMPTIVDSIFSGEEAYGRFFDLHTCHEAFMNLPNV KRLNYLQYLENFDNFSPGYGGVKRVEKLTDQYFKYVGDIVDYLVSFRKRTQPLEPSGMVLAKLDEEFDKAWDNDE LQGWQLDQTSGKKDSDGAGTVWCAECEKEFKNENVYKGHLAGRKHLKAAEHRKQLQQEQKEVGGDEKAERRGNQV SMTRVKERAVAKREFYVKRLAEGMSVVRSDTRVNVERRQGMTERERQQELENLQNMSDAPRGGAEEDEEEDEDGE EKIYNPLKLPLAWDGKPIPFWLYRLHGLGVEFHCEICGNFVYMGRRAFDKHFGEPRHIHGLKCLGITNVTLFRDI TKIEEALKLWEKLQQEQKRSKVDEGSIVQMEDGEGNVMPEKVYLDLQKQGLL*
Coding	>Hirsu2\|5998 ATGCTTGTCGCCGAAGACCAACGATACATCCACGAGGATCTGGAGCGCCTGGAGCAGGCCATCGCGGATCGTGCT CGTGAGGAGCACAAACATATTCGCAACCAATTGAACCAAGGGCACGAGATAGCCCAGCTCCTGGAGCAGATTCAG CAGCAGTGCAGCAACCTCGTCGCCATCTTCGAGGACGATGCGGGGTCGATGGCTCGCGAGATCGAGCAGATCGAA ACGGGTGATCCGTTTGGCCAGTTCTACAGCCAGCTCAACGAACTGCGTGAACACCATTCTCGGTACCCAAACGAG CAGGCTGAGAACTCGGAGCAACGCTACAAGGCGAGACGCGTGGCCGACATGCCTACCATTGTCGACAGCATTTTC TCGGGCGAAGAAGCATACGGTCGTTTCTTCGATCTCCATACCTGCCATGAGGCGTTTATGAACCTTCCCAATGTC AAGCGACTCAACTACCTGCAGTATCTCGAGAACTTTGACAACTTTTCGCCCGGGTATGGAGGCGTCAAACGGGTC GAGAAACTCACAGATCAGTACTTCAAGTACGTCGGCGACATTGTCGACTATCTCGTGTCTTTCCGGAAGCGGACC CAGCCGTTGGAGCCCAGTGGCATGGTCTTGGCCAAACTCGACGAGGAGTTTGACAAGGCCTGGGACAACGACGAG CTCCAAGGCTGGCAGCTGGACCAGACATCGGGAAAGAAGGACTCGGACGGCGCCGGGACGGTTTGGTGCGCCGAG TGCGAAAAAGAATTCAAAAACGAGAACGTCTACAAGGGCCACCTGGCTGGGAGGAAGCATCTCAAAGCCGCCGAG CACCGGAAGCAACTGCAGCAGGAGCAGAAGGAAGTGGGCGGTGACGAGAAAGCTGAACGCAGAGGGAATCAGGTC TCGATGACGCGAGTCAAGGAGCGGGCGGTAGCCAAGCGCGAATTCTACGTCAAGAGACTTGCCGAGGGCATGAGC GTTGTACGAAGCGACACGCGCGTCAACGTGGAGCGGAGGCAAGGGATGACGGAGCGCGAGCGACAGCAGGAGCTC GAAAACCTGCAGAACATGTCCGATGCCCCTCGAGGAGGCGCCGAGGAGGACGAGGAGGAGGACGAAGACGGCGAA GAAAAGATTTACAACCCGCTGAAGCTGCCGCTGGCCTGGGACGGCAAGCCGATCCCGTTCTGGCTGTACCGACTT CACGGCCTCGGCGTCGAGTTCCACTGCGAGATCTGCGGCAACTTCGTCTACATGGGCCGGCGGGCCTTCGATAAG CACTTTGGCGAGCCGCGCCACATCCACGGCCTGAAGTGCCTGGGCATCACCAACGTGACCCTCTTCAGGGACATC ACCAAGATCGAGGAGGCGCTGAAGCTCTGGGAGAAGCTCCAGCAGGAGCAGAAGAGGTCCAAGGTGGACGAAGGG AGCATCGTGCAGATGGAGGATGGCGAGGGCAACGTCATGCCGGAGAAGGTGTACCTGGATCTGCAGAAACAGGGC CTGCTGTGA
Transcript	>Hirsu2\|5998 ATGCTTGTCGCCGAAGACCAACGATACATCCACGAGGATCTGGAGCGCCTGGAGCAGGCCATCGCGGATCGTGCT CGTGAGGAGCACAAACATATTCGCAACCAATTGAACCAAGGGCACGAGATAGCCCAGCTCCTGGAGCAGATTCAG CAGCAGTGCAGCAACCTCGTCGCCATCTTCGAGGACGATGCGGGGTCGATGGCTCGCGAGATCGAGCAGATCGAA ACGGGTGATCCGTTTGGCCAGTTCTACAGCCAGCTCAACGAACTGCGTGAACACCATTCTCGGTACCCAAACGAG CAGGCTGAGAACTCGGAGCAACGCTACAAGGCGAGACGCGTGGCCGACATGCCTACCATTGTCGACAGCATTTTC TCGGGCGAAGAAGCATACGGTCGTTTCTTCGATCTCCATACCTGCCATGAGGCGTTTATGAACCTTCCCAATGTC AAGCGACTCAACTACCTGCAGTATCTCGAGAACTTTGACAACTTTTCGCCCGGGTATGGAGGCGTCAAACGGGTC GAGAAACTCACAGATCAGTACTTCAAGTACGTCGGCGACATTGTCGACTATCTCGTGTCTTTCCGGAAGCGGACC CAGCCGTTGGAGCCCAGTGGCATGGTCTTGGCCAAACTCGACGAGGAGTTTGACAAGGCCTGGGACAACGACGAG CTCCAAGGCTGGCAGCTGGACCAGACATCGGGAAAGAAGGACTCGGACGGCGCCGGGACGGTTTGGTGCGCCGAG TGCGAAAAAGAATTCAAAAACGAGAACGTCTACAAGGGCCACCTGGCTGGGAGGAAGCATCTCAAAGCCGCCGAG CACCGGAAGCAACTGCAGCAGGAGCAGAAGGAAGTGGGCGGTGACGAGAAAGCTGAACGCAGAGGGAATCAGGTC TCGATGACGCGAGTCAAGGAGCGGGCGGTAGCCAAGCGCGAATTCTACGTCAAGAGACTTGCCGAGGGCATGAGC GTTGTACGAAGCGACACGCGCGTCAACGTGGAGCGGAGGCAAGGGATGACGGAGCGCGAGCGACAGCAGGAGCTC GAAAACCTGCAGAACATGTCCGATGCCCCTCGAGGAGGCGCCGAGGAGGACGAGGAGGAGGACGAAGACGGCGAA GAAAAGATTTACAACCCGCTGAAGCTGCCGCTGGCCTGGGACGGCAAGCCGATCCCGTTCTGGCTGTACCGACTT CACGGCCTCGGCGTCGAGTTCCACTGCGAGATCTGCGGCAACTTCGTCTACATGGGCCGGCGGGCCTTCGATAAG CACTTTGGCGAGCCGCGCCACATCCACGGCCTGAAGTGCCTGGGCATCACCAACGTGACCCTCTTCAGGGACATC ACCAAGATCGAGGAGGCGCTGAAGCTCTGGGAGAAGCTCCAGCAGGAGCAGAAGAGGTCCAAGGTGGACGAAGGG AGCATCGTGCAGATGGAGGATGGCGAGGGCAACGTCATGCCGGAGAAGGTGTACCTGGATCTGCAGAAACAGGGC CTGCTGTGA
Gene	>Hirsu2\|5998 ATGCTTGTCGCCGAAGACCAACGATACATCCACGAGGATCTGGAGCGCCTGGAGCAGGCCATCGCGGATCGTGCT CGTGAGGAGCACAAACATGTGAGTATCTTGCAGCCCTCTGACCTCACCGCAGCCTCGGACGCTGAAACTTGGAGA CGCGAGATTCGCAACCAATTGAACCAAGGGCACGAGATAGCCCAGCTCCTGGAGCAGATTCAGCAGCAGTGCAGC AACCTCGTCGCCATCTTCGAGGACGATGCGGGGTCGATGGCTCGCGAGATCGAGCAGATCGAAACGGGTGATCCG TTTGGCCAGTTCTACAGCCAGCTCAACGAACTGCGTGAACACCATTCTCGGTACCCAAACGAGCAGGCTGAGAAC TCGGAGCAACGCTACAAGGCGAGACGCGTGGCCGACATGCCTACCATTGTCGACAGCATTTTCTCGGGCGAAGAA GCATACGGTCGTTTCTTCGATCTCCATACCTGCCATGAGGCGTTTATGAACCTTCCCAATGTCAAGCGACTCAAC TACCTGCAGTATCTCGAGAACTTTGACAACTTTTCGCCCGGGTATGGAGGCGTCAAACGGGTCGAGAAACTCACA GATCAGTACTTCAAGTACGTCGGCGACATTGTCGACTATCTCGTGTCTTTCCGGAAGCGGACCCAGCCGTTGGAG CCCAGTGGCATGGTCTTGGCCAAACTCGACGAGGAGTTTGACAAGGCCTGGGACAACGACGAGCTCCAAGGCTGG CAGCTGGACCAGACATCGGGAAAGAAGGACTCGGACGGCGCCGGGACGGTTTGGTGCGCCGAGTGCGAAAAAGAA TTCAAAAACGAGAACGTCTACAAGGGCCACCTGGCTGGGAGGAAGCATCTCAAAGCCGCCGAGCACCGGAAGCAA CTGCAGCAGGAGCAGAAGGAAGTGGGCGGTGACGAGAAAGCTGAACGCAGAGGGAATCAGGTCTCGATGACGCGA GTCAAGGAGCGGGCGGTAGCCAAGCGCGAATTCTACGTCAAGAGACTTGCCGAGGGCATGAGCGTTGTACGAAGC GACACGCGCGTCAACGTGGAGCGGAGGCAAGGGATGACGGAGCGCGAGCGACAGCAGGAGCTCGAAAACCTGCAG AACATGTCCGATGCCCCTCGAGGAGGCGCCGAGGAGGACGAGGAGGAGGACGAAGACGGCGAAGAAAAGATTTAC AACCCGCTGAAGCTGCCGCTGGCCTGGGACGGCAAGCCGATCCCGTTCTGGCTGTACCGACTTCACGGCCTCGGC GTCGAGTTCCACTGCGAGATCTGCGGCAACTTCGTCTACATGGGCCGGCGGGCCTTCGATAAGCACTTTGGCGAG CCGCGCCACATCCACGGCCTGAAGTGCCTGGGCATCACCAACGTGACCCTCTTCAGGGACATCACCAAGATCGAG GAGGCGCTGAAGCTCTGGGAGAAGCTCCAGCAGGAGCAGAAGAGGTCCAAGGTGGACGAAGGGAGCATCGTGCAG ATGGAGGATGGCGAGGGCAACGTCATGCCGGAGAAGGTGTACCTGGATCTGCAGAAACAGGGCCTGCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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