© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5980 |
| Gene name | |
| Location | Contig_301:21694..23288 |
| Strand | - |
| Gene length (bp) | 1594 |
| Transcript length (bp) | 1473 |
| Coding sequence length (bp) | 1473 |
| Protein length (aa) | 491 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 5.6E-23 | 60 | 194 |
| PF08031 | BBE | Berberine and berberine like | 1.1E-12 | 433 | 477 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O06997|YVDP_BACSU | Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 | 49 | 480 | 6.0E-21 |
| sp|A6P6W0|CASL1_CANSA | Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 | 60 | 479 | 1.0E-20 |
| sp|Q8GTB6|THCAS_CANSA | Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 | 60 | 479 | 1.0E-20 |
| sp|A6P6W1|CASL2_CANSA | Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 | 60 | 479 | 7.0E-20 |
| sp|A6P6V9|CBDAS_CANSA | Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 | 60 | 479 | 6.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O06997|YVDP_BACSU | Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 | 49 | 480 | 6.0E-21 |
| sp|A6P6W0|CASL1_CANSA | Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 | 60 | 479 | 1.0E-20 |
| sp|Q8GTB6|THCAS_CANSA | Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 | 60 | 479 | 1.0E-20 |
| sp|A6P6W1|CASL2_CANSA | Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 | 60 | 479 | 7.0E-20 |
| sp|A6P6V9|CBDAS_CANSA | Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 | 60 | 479 | 6.0E-19 |
| sp|Q9FZC7|FOX4_ARATH | Flavin-dependent oxidoreductase FOX4 OS=Arabidopsis thaliana GN=FOX4 PE=2 SV=1 | 62 | 480 | 9.0E-19 |
| sp|Q33DQ2|THCAI_CANSA | Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 | 60 | 479 | 1.0E-18 |
| sp|Q9FZC5|FOX2_ARATH | Flavin-dependent oxidoreductase FOX2 OS=Arabidopsis thaliana GN=FOX2 PE=2 SV=1 | 62 | 480 | 1.0E-17 |
| sp|Q796Y5|YGAK_BACSU | Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 | 37 | 479 | 3.0E-17 |
| sp|P08159|HDNO_ARTOX | 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxydans PE=1 SV=2 | 60 | 229 | 4.0E-17 |
| sp|Q9FZC4|FOX1_ARATH | Flavin-dependent oxidoreductase FOX1 OS=Arabidopsis thaliana GN=FOX1 PE=2 SV=1 | 5 | 490 | 7.0E-17 |
| sp|Q9FZC8|FOX5_ARATH | Flavin-dependent oxidoreductase FOX5 OS=Arabidopsis thaliana GN=FOX5 PE=3 SV=1 | 62 | 480 | 2.0E-16 |
| sp|Q9SVG4|RETOL_ARATH | Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 | 52 | 477 | 2.0E-15 |
| sp|Q9FZC6|FOX3_ARATH | Flavin-dependent oxidoreductase FOX3 OS=Arabidopsis thaliana GN=FOX3 PE=3 SV=1 | 56 | 480 | 1.0E-14 |
| sp|Q54H55|Y8969_DICDI | FAD-linked oxidoreductase DDB_G0289697 OS=Dictyostelium discoideum GN=DDB_G0289697 PE=2 SV=1 | 52 | 479 | 1.0E-14 |
| sp|Q7SGY1|ALO_NEUCR | Putative D-arabinono-1,4-lactone oxidase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=alo-1 PE=3 SV=1 | 24 | 241 | 3.0E-10 |
| sp|Q0PCD7|AKNOX_STRGJ | Aclacinomycin-N/aclacinomycin-A oxidase OS=Streptomyces galilaeus GN=aknOx PE=1 SV=1 | 52 | 479 | 3.0E-09 |
| sp|P30986|RETO_ESCCA | Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 | 60 | 479 | 6.0E-09 |
| sp|P93479|RETO_PAPSO | Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=2 SV=1 | 60 | 479 | 3.0E-08 |
| sp|P58710|GGLO_MOUSE | L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3 | 59 | 215 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1223 | 0.0603 | 0.9465 | 0.1326 | 0.1391 | 0.0855 | 0.2953 | 0.4299 | 0.148 | 0.0539 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.8334 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| AA7 | 7.0E-79 | 50 | 274 |
| Orthofinder run ID | 4 |
| Orthogroup | 3274 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5980 MTAWLSLSALWSLCSARALQTVSASLPSCLAQAGVPFLVSDSSDWAGEIMPYNVRLNYTPAAVAMPQSVAQIQAA VSCGVRNRARITAKGGGHSFGSFGLGGEDGHLVIGFEHMRRVVVKDDNTATIQAGARLLDVATELYNQGRRALPH GSVGIAGHVLHGGFGYASRTHGLTLDWLTGATVVLADASVVHCSAIENQDLFWALRGAGSSFGIVAEFEFDTFEA PNQVTSFSLDLPSWERADAVEAISSLQRFAVSAPRELNLMLDITPTDKTFQGVYYGNQRGLHEALRPLLSDVGGN FSSASTVGWLEGLLKFDDLDPADPRDTFYATSLVTRALDGGQIESLVSSLAAASPPSLRRSLYLSIEAHGGINSA VADVGSSATAYPHRDKLLLFQLFHGGSQGRYDDNGFGLVETVRRSVTDSVAGGEWGMYSNYLDTQLDAPAAGELY WGSNLPRLRRIKADLDPYEVFWNPQGIQPADSLYKAGYEL* |
| Coding | >Hirsu2|5980 ATGACGGCATGGCTCTCCCTGTCCGCCCTTTGGTCGCTGTGCTCTGCCAGGGCGCTCCAGACCGTCTCGGCCAGC CTGCCGTCTTGTCTGGCTCAAGCAGGTGTCCCATTCTTGGTCAGCGACTCGAGCGACTGGGCTGGTGAAATCATG CCATACAATGTTCGGCTGAACTACACGCCAGCCGCCGTTGCCATGCCGCAGTCCGTCGCCCAGATCCAAGCGGCT GTCTCGTGCGGCGTAAGGAACCGAGCGCGCATCACCGCCAAGGGCGGCGGTCACAGCTTCGGCTCTTTCGGGCTC GGCGGCGAGGATGGGCATCTGGTGATCGGCTTCGAGCACATGCGTCGGGTGGTGGTCAAGGACGACAATACGGCA ACGATCCAAGCAGGCGCCAGGCTGCTGGACGTGGCGACGGAACTGTACAACCAGGGGCGAAGAGCGCTGCCTCAC GGCTCTGTTGGCATCGCGGGTCATGTCTTGCACGGCGGCTTCGGCTACGCCTCGCGAACGCACGGCCTCACGCTC GACTGGCTGACGGGCGCAACGGTTGTCCTTGCCGATGCCTCCGTGGTCCATTGTTCCGCCATCGAGAACCAGGAT CTTTTCTGGGCCCTGCGAGGGGCTGGATCGTCGTTTGGGATCGTTGCCGAATTCGAGTTCGACACCTTCGAGGCA CCAAACCAAGTCACCTCGTTCAGTCTTGACCTGCCCTCGTGGGAGCGAGCCGACGCGGTCGAGGCCATCAGTTCC CTGCAAAGATTCGCCGTCTCGGCCCCCAGAGAACTGAACCTAATGCTCGATATAACGCCGACGGACAAGACCTTC CAGGGCGTATACTACGGGAATCAAAGGGGACTCCACGAGGCGCTGCGGCCGCTGCTGAGCGACGTTGGCGGTAAC TTCTCGTCTGCGAGCACCGTTGGATGGCTTGAAGGGCTATTGAAGTTCGACGACCTCGACCCTGCCGACCCTCGT GACACATTTTACGCGACCAGCCTAGTTACGCGTGCCCTCGATGGCGGCCAAATCGAGTCGCTTGTGTCGAGCCTC GCTGCCGCCAGCCCGCCTTCTCTGCGCCGTTCGTTGTATCTGAGCATCGAAGCGCACGGGGGAATCAACTCGGCC GTTGCCGATGTCGGCTCGTCGGCGACCGCATACCCTCATCGTGACAAGTTGCTGCTGTTCCAGCTCTTCCATGGG GGGTCTCAGGGCCGCTACGACGACAACGGCTTCGGCCTTGTGGAGACGGTGAGAAGAAGCGTCACAGACTCCGTG GCCGGCGGTGAATGGGGTATGTACTCGAATTATCTCGACACGCAATTGGACGCCCCGGCTGCTGGTGAGTTGTAC TGGGGGAGCAACCTGCCGCGGTTGCGAAGAATCAAGGCCGACTTGGATCCGTATGAGGTGTTTTGGAACCCCCAG GGCATCCAGCCTGCAGACTCTCTGTACAAAGCAGGATATGAATTGTGA |
| Transcript | >Hirsu2|5980 ATGACGGCATGGCTCTCCCTGTCCGCCCTTTGGTCGCTGTGCTCTGCCAGGGCGCTCCAGACCGTCTCGGCCAGC CTGCCGTCTTGTCTGGCTCAAGCAGGTGTCCCATTCTTGGTCAGCGACTCGAGCGACTGGGCTGGTGAAATCATG CCATACAATGTTCGGCTGAACTACACGCCAGCCGCCGTTGCCATGCCGCAGTCCGTCGCCCAGATCCAAGCGGCT GTCTCGTGCGGCGTAAGGAACCGAGCGCGCATCACCGCCAAGGGCGGCGGTCACAGCTTCGGCTCTTTCGGGCTC GGCGGCGAGGATGGGCATCTGGTGATCGGCTTCGAGCACATGCGTCGGGTGGTGGTCAAGGACGACAATACGGCA ACGATCCAAGCAGGCGCCAGGCTGCTGGACGTGGCGACGGAACTGTACAACCAGGGGCGAAGAGCGCTGCCTCAC GGCTCTGTTGGCATCGCGGGTCATGTCTTGCACGGCGGCTTCGGCTACGCCTCGCGAACGCACGGCCTCACGCTC GACTGGCTGACGGGCGCAACGGTTGTCCTTGCCGATGCCTCCGTGGTCCATTGTTCCGCCATCGAGAACCAGGAT CTTTTCTGGGCCCTGCGAGGGGCTGGATCGTCGTTTGGGATCGTTGCCGAATTCGAGTTCGACACCTTCGAGGCA CCAAACCAAGTCACCTCGTTCAGTCTTGACCTGCCCTCGTGGGAGCGAGCCGACGCGGTCGAGGCCATCAGTTCC CTGCAAAGATTCGCCGTCTCGGCCCCCAGAGAACTGAACCTAATGCTCGATATAACGCCGACGGACAAGACCTTC CAGGGCGTATACTACGGGAATCAAAGGGGACTCCACGAGGCGCTGCGGCCGCTGCTGAGCGACGTTGGCGGTAAC TTCTCGTCTGCGAGCACCGTTGGATGGCTTGAAGGGCTATTGAAGTTCGACGACCTCGACCCTGCCGACCCTCGT GACACATTTTACGCGACCAGCCTAGTTACGCGTGCCCTCGATGGCGGCCAAATCGAGTCGCTTGTGTCGAGCCTC GCTGCCGCCAGCCCGCCTTCTCTGCGCCGTTCGTTGTATCTGAGCATCGAAGCGCACGGGGGAATCAACTCGGCC GTTGCCGATGTCGGCTCGTCGGCGACCGCATACCCTCATCGTGACAAGTTGCTGCTGTTCCAGCTCTTCCATGGG GGGTCTCAGGGCCGCTACGACGACAACGGCTTCGGCCTTGTGGAGACGGTGAGAAGAAGCGTCACAGACTCCGTG GCCGGCGGTGAATGGGGTATGTACTCGAATTATCTCGACACGCAATTGGACGCCCCGGCTGCTGGTGAGTTGTAC TGGGGGAGCAACCTGCCGCGGTTGCGAAGAATCAAGGCCGACTTGGATCCGTATGAGGTGTTTTGGAACCCCCAG GGCATCCAGCCTGCAGACTCTCTGTACAAAGCAGGATATGAATTGTGA |
| Gene | >Hirsu2|5980 ATGACGGCATGGCTCTCCCTGTCCGCCCTTTGGTCGCTGTGCTCTGCCAGGGCGCTCCAGACCGTCTCGGCCAGC CTGCCGTCTTGTCTGGCTCAAGCAGGTGTCCCATTCTTGGTCAGCGACTCGAGCGACTGGGCTGGTGAAATCATG CCATACAATGTTCGGCTGAACTACACGCCAGCCGCCGTTGCCATGCCGCAGTCCGTCGCCCAGATCCAAGCGGCT GTCTCGTGCGGCGTAAGGAACCGAGCGCGCATCACCGCCAAGGGCGGCGGTCACAGCTTCGGCTCTTTCGGGCTC GGCGGCGAGGATGGGCATCTGGTGATCGGCTTCGAGCACATGCGTCGGGTGGTGGTCAAGGACGACAATACGGCA ACGATCCAAGCAGGCGCCAGGCTGCTGGACGTGGCGACGGAACTGTACAACCAGGGGCGAAGAGCGCTGCCTCAC GGCTCGTGCATGAGGCGAGCGCTCGCGTGTCCCCGCCGCGGCATTTCGCCATCGCTGATCGGTGTTGCAGTGTTG GCATCGCGGGTCATGTCTTGCACGGCGGCTTCGGCTACGCCTCGCGAACGCACGGCCTCACGCTCGACTGGCTGA CGGGCGCAACGGTTGTCCTTGCCGATGCCTCCGTGGTCCATTGTTCCGCCATCGAGAACCAGGATCTTTTCTGGG CCCTGCGAGGGGCTGGATCGTCGTTTGGGATCGTTGCCGAATTCGAGTTCGACACCTTCGAGGCACCAAACCAAG TCACCTCGTTCAGTCTTGACCTGCCCTCGTGGGAGCGAGCCGACGCGGTCGAGGCCATCAGTTCCCTGCAAAGAT TCGCCGTCTCGGCCCCCAGAGAACTGAACCTAATGCTCGATATAACGCCGACGGACAAGACCTTCCAGGGCGTAT ACTACGGGAATCAAAGGGGACTCCACGAGGCGCTGCGGCCGCTGCTGAGCGACGTTGGCGGTAACTTCTCGTCTG CGAGCACCGTTGGATGGCTTGAAGGGCTATTGAAGTTCGACGACCTCGACCCTGCCGACCCTGTTTGTGTCCCCC CTTGGCGATGGAGAGACCGACCACCGGGGCTGATTCTTCGCAGCGTGACACATTTTACGCGACCAGCCTAGTTAC GCGTGCCCTCGATGGCGGCCAAATCGAGTCGCTTGTGTCGAGCCTCGCTGCCGCCAGCCCGCCTTCTCTGCGCCG TTCGTTGTATCTGAGCATCGAAGCGCACGGGGGAATCAACTCGGCCGTTGCCGATGTCGGCTCGTCGGCGACCGC ATACCCTCATCGTGACAAGTTGCTGCTGTTCCAGCTCTTCCATGGGGGGTCTCAGGGCCGCTACGACGACAACGG CTTCGGCCTTGTGGAGACGGTGAGAAGAAGCGTCACAGACTCCGTGGCCGGCGGTGAATGGGGTATGTACTCGAA TTATCTCGACACGCAATTGGACGCCCCGGCTGCTGGTGAGTTGTACTGGGGGAGCAACCTGCCGCGGTTGCGAAG AATCAAGGCCGACTTGGATCCGTATGAGGTGTTTTGGAACCCCCAGGGCATCCAGCCTGCAGACTCTCTGTACAA AGCAGGATATGAATTGTGA |