Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|5972
Gene name
Location	Contig_301:4732..5480
Strand	-
Gene length (bp)	748
Transcript length (bp)	573
Coding sequence length (bp)	573
Protein length (aa)	191

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF06127	Mpo1-like	2-hydroxy-palmitic acid dioxygenase Mpo1-like	1.8E-26	4	159

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P25338\|YGB0_YEAST	Uncharacterized endoplasmic reticulum membrane protein YGL010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL010W PE=1 SV=2	3	185	7.0E-28
sp\|O13737\|YDR2_SCHPO	Uncharacterized endoplasmic reticulum membrane protein C16E8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.02 PE=4 SV=2	5	174	2.0E-27

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 41	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	21	43	22
2	67	89	22
3	110	129	19
4	139	161	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|5972 MSLDLERHLTFYGAYHHNSVNVAIHMVCVPLILVSGFCMATYTGTLIHTPPWLTVPHLDLNLGTIAAVVYACLYV LLEPVAGFVLAAFCVGSTALANHMRVEDPQTTFRTALFVHIISWVAQFVGHGAFEGRAPALLDNLVQAVFLAPMF VWLEILFKLGYRRELQSRVEKGVQEEIAKFKAQSKNGKAH*
Coding	>Hirsu2\|5972 ATGTCCCTGGACCTGGAGAGGCATCTGACCTTCTATGGCGCCTATCATCACAATTCGGTCAACGTGGCCATTCAC ATGGTCTGCGTCCCGCTCATCCTGGTCTCGGGCTTCTGCATGGCCACATATACCGGCACCCTGATCCACACGCCC CCGTGGCTGACCGTCCCTCACCTCGATCTCAACCTGGGCACCATAGCCGCCGTCGTCTACGCCTGTCTCTACGTC CTGTTAGAGCCCGTCGCCGGCTTCGTTCTCGCCGCCTTCTGCGTCGGAAGCACCGCCTTGGCAAACCACATGCGC GTCGAGGACCCTCAAACAACCTTCCGCACCGCCCTCTTCGTGCACATTATCTCGTGGGTCGCCCAGTTTGTCGGC CACGGCGCCTTCGAGGGACGTGCCCCCGCCCTGCTCGACAACCTCGTACAAGCCGTCTTCCTGGCGCCCATGTTT GTCTGGCTCGAGATCCTCTTCAAGCTCGGCTACCGCAGGGAATTGCAGAGCCGTGTGGAAAAGGGCGTGCAGGAG GAGATTGCCAAGTTCAAGGCACAGTCGAAAAACGGCAAGGCGCACTAG
Transcript	>Hirsu2\|5972 ATGTCCCTGGACCTGGAGAGGCATCTGACCTTCTATGGCGCCTATCATCACAATTCGGTCAACGTGGCCATTCAC ATGGTCTGCGTCCCGCTCATCCTGGTCTCGGGCTTCTGCATGGCCACATATACCGGCACCCTGATCCACACGCCC CCGTGGCTGACCGTCCCTCACCTCGATCTCAACCTGGGCACCATAGCCGCCGTCGTCTACGCCTGTCTCTACGTC CTGTTAGAGCCCGTCGCCGGCTTCGTTCTCGCCGCCTTCTGCGTCGGAAGCACCGCCTTGGCAAACCACATGCGC GTCGAGGACCCTCAAACAACCTTCCGCACCGCCCTCTTCGTGCACATTATCTCGTGGGTCGCCCAGTTTGTCGGC CACGGCGCCTTCGAGGGACGTGCCCCCGCCCTGCTCGACAACCTCGTACAAGCCGTCTTCCTGGCGCCCATGTTT GTCTGGCTCGAGATCCTCTTCAAGCTCGGCTACCGCAGGGAATTGCAGAGCCGTGTGGAAAAGGGCGTGCAGGAG GAGATTGCCAAGTTCAAGGCACAGTCGAAAAACGGCAAGGCGCACTAG
Gene	>Hirsu2\|5972 ATGTCCCTGGACCTGGAGAGGCATCTGACCTTCGTACGTCGCCAAGCTGCCGGTGCCCGTGGATGGAGTCTGCTC CGTCTGTTCCATGCCGTGCCGACCGATACTGACCTGGCCGCCTCCCTCCCTTGCAGTATGGCGCCTATCATCACA ATTCGGTCAACGTGGCCATTCACATGGTCTGCGTCCCGCTCATCCTGGTCTCGGGCTTCTGCATGGTACGGCTCG TCCCCTCCCCCCCTCCTCGAGTCCGTCGACGACCCGGCCAAGCTCCTAATCTCGGGCTGTCTGCTAGGCCACATA TACCGGCACCCTGATCCACACGCCCCCGTGGCTGACCGTCCCTCACCTCGATCTCAACCTGGGCACCATAGCCGC CGTCGTCTACGCCTGTCTCTACGTCCTGTTAGAGCCCGTCGCCGGCTTCGTTCTCGCCGCCTTCTGCGTCGGAAG CACCGCCTTGGCAAACCACATGCGCGTCGAGGACCCTCAAACAACCTTCCGCACCGCCCTCTTCGTGCACATTAT CTCGTGGGTCGCCCAGTTTGTCGGCCACGGCGCCTTCGAGGGACGTGCCCCCGCCCTGCTCGACAACCTCGTACA AGCCGTCTTCCTGGCGCCCATGTTTGTCTGGCTCGAGATCCTCTTCAAGCTCGGCTACCGCAGGGAATTGCAGAG CCGTGTGGAAAAGGGCGTGCAGGAGGAGATTGCCAAGTTCAAGGCACAGTCGAAAAACGGCAAGGCGCACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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