© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5968 |
| Gene name | |
| Location | Contig_3007:155..1298 |
| Strand | + |
| Gene length (bp) | 1143 |
| Transcript length (bp) | 864 |
| Coding sequence length (bp) | 864 |
| Protein length (aa) | 288 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04161 | Arv1 | Arv1-like family | 1.1E-68 | 3 | 217 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9HDX5|ARV1_SCHPO | Protein arv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arv1 PE=3 SV=3 | 4 | 267 | 1.0E-41 |
| sp|Q54GD9|ARV1_DICDI | Protein arv1 homolog OS=Dictyostelium discoideum GN=arv1 PE=3 SV=1 | 3 | 249 | 2.0E-25 |
| sp|Q5ANH2|ARV1_CANAL | Protein ARV1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ARV1 PE=3 SV=1 | 3 | 234 | 4.0E-25 |
| sp|Q750Q7|ARV1_ASHGO | Protein ARV1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ARV1 PE=3 SV=1 | 3 | 278 | 1.0E-22 |
| sp|Q9H2C2|ARV1_HUMAN | Protein ARV1 OS=Homo sapiens GN=ARV1 PE=2 SV=1 | 4 | 235 | 4.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9HDX5|ARV1_SCHPO | Protein arv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arv1 PE=3 SV=3 | 4 | 267 | 1.0E-41 |
| sp|Q54GD9|ARV1_DICDI | Protein arv1 homolog OS=Dictyostelium discoideum GN=arv1 PE=3 SV=1 | 3 | 249 | 2.0E-25 |
| sp|Q5ANH2|ARV1_CANAL | Protein ARV1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ARV1 PE=3 SV=1 | 3 | 234 | 4.0E-25 |
| sp|Q750Q7|ARV1_ASHGO | Protein ARV1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ARV1 PE=3 SV=1 | 3 | 278 | 1.0E-22 |
| sp|Q9H2C2|ARV1_HUMAN | Protein ARV1 OS=Homo sapiens GN=ARV1 PE=2 SV=1 | 4 | 235 | 4.0E-15 |
| sp|Q3SZW3|ARV1_BOVIN | Protein ARV1 OS=Bos taurus GN=ARV1 PE=2 SV=1 | 4 | 235 | 7.0E-15 |
| sp|Q9D0U9|ARV1_MOUSE | Protein ARV1 OS=Mus musculus GN=Arv1 PE=2 SV=1 | 4 | 222 | 7.0E-15 |
| sp|Q06541|ARV1_YEAST | Protein ARV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARV1 PE=1 SV=1 | 3 | 247 | 1.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0032366 | intracellular sterol transport | Yes |
| GO:0051649 | establishment of localization in cell | No |
| GO:0006869 | lipid transport | No |
| GO:0051641 | cellular localization | No |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0032365 | intracellular lipid transport | No |
| GO:0071702 | organic substance transport | No |
| GO:0015850 | organic hydroxy compound transport | No |
| GO:0046907 | intracellular transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0015918 | sterol transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 84 | 103 | 19 |
| 2 | 126 | 148 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5968 MPICIECRHPAKTLWTRYSGAGDQSSVYNIRLTVCRQCGSFCDKYVEHDFIVLFIDLVLIKPQVYRHLLHNSLMR DGGRFDPSIIRLGVLLLLFDVYLTWARIEKQTSPATLPGEINLGKLAQQPIVLQYLFFLILCSLSTLAFHVSIRS LACSSLSPLCSLKLMVRHATPNSVSTALLVSSSTKLFPILMVIWEYDVPAAARSLGWAVVANNVEALRILLDCKY HIACILAIAGAASRWIIGRLVLAAAGLGDVDSISEGSVAADGKALWALLMLIREWAGRLAVG* |
| Coding | >Hirsu2|5968 ATGCCTATTTGTATCGAATGTCGACACCCGGCCAAGACCCTCTGGACACGGTACTCTGGGGCAGGCGATCAATCA AGCGTATACAACATCCGATTGACTGTTTGCCGCCAATGCGGGTCGTTTTGCGACAAGTATGTTGAACATGACTTC ATCGTACTGTTTATCGACCTTGTCTTGATTAAGCCTCAGGTCTACCGCCACCTACTGCATAACAGCTTGATGCGC GATGGTGGTCGTTTCGATCCATCTATCATTCGACTCGGAGTCTTGTTACTACTCTTTGACGTTTATCTGACTTGG GCGCGCATCGAGAAGCAAACATCTCCCGCTACGCTACCCGGTGAAATCAATCTTGGCAAGCTTGCGCAACAGCCC ATTGTCCTACAATACCTATTTTTCTTGATCCTGTGTAGCCTCTCGACATTGGCGTTCCACGTCAGCATTCGCTCT CTTGCTTGTTCATCGCTCTCCCCGTTATGCTCGCTTAAACTTATGGTTCGCCACGCAACTCCGAATTCCGTCTCC ACAGCCCTCCTCGTTTCGTCGTCAACCAAACTTTTCCCCATCTTGATGGTAATCTGGGAATACGATGTCCCTGCG GCTGCAAGATCACTAGGCTGGGCTGTTGTAGCCAACAATGTCGAGGCTTTGCGTATACTGCTGGACTGCAAATAT CACATCGCTTGCATCCTGGCTATTGCAGGGGCAGCGTCGCGATGGATCATTGGTAGACTCGTTCTTGCTGCCGCT GGGTTGGGCGATGTCGATTCGATCAGCGAAGGCAGCGTGGCGGCCGATGGTAAGGCTTTGTGGGCCCTGTTGATG CTGATAAGGGAGTGGGCGGGACGTCTAGCCGTGGGATGA |
| Transcript | >Hirsu2|5968 ATGCCTATTTGTATCGAATGTCGACACCCGGCCAAGACCCTCTGGACACGGTACTCTGGGGCAGGCGATCAATCA AGCGTATACAACATCCGATTGACTGTTTGCCGCCAATGCGGGTCGTTTTGCGACAAGTATGTTGAACATGACTTC ATCGTACTGTTTATCGACCTTGTCTTGATTAAGCCTCAGGTCTACCGCCACCTACTGCATAACAGCTTGATGCGC GATGGTGGTCGTTTCGATCCATCTATCATTCGACTCGGAGTCTTGTTACTACTCTTTGACGTTTATCTGACTTGG GCGCGCATCGAGAAGCAAACATCTCCCGCTACGCTACCCGGTGAAATCAATCTTGGCAAGCTTGCGCAACAGCCC ATTGTCCTACAATACCTATTTTTCTTGATCCTGTGTAGCCTCTCGACATTGGCGTTCCACGTCAGCATTCGCTCT CTTGCTTGTTCATCGCTCTCCCCGTTATGCTCGCTTAAACTTATGGTTCGCCACGCAACTCCGAATTCCGTCTCC ACAGCCCTCCTCGTTTCGTCGTCAACCAAACTTTTCCCCATCTTGATGGTAATCTGGGAATACGATGTCCCTGCG GCTGCAAGATCACTAGGCTGGGCTGTTGTAGCCAACAATGTCGAGGCTTTGCGTATACTGCTGGACTGCAAATAT CACATCGCTTGCATCCTGGCTATTGCAGGGGCAGCGTCGCGATGGATCATTGGTAGACTCGTTCTTGCTGCCGCT GGGTTGGGCGATGTCGATTCGATCAGCGAAGGCAGCGTGGCGGCCGATGGTAAGGCTTTGTGGGCCCTGTTGATG CTGATAAGGGAGTGGGCGGGACGTCTAGCCGTGGGATGA |
| Gene | >Hirsu2|5968 ATGCCTATTTGTATCGAATGTCGACACCCGGCCAAGACCCTCTGGACACGGTACTCTGGGGCAGGCGATCAATCA AGCGTATACAACATCCGATTGACTGTTTGCCGCCAATGCGGGTCGTTTTGCGACAAGTATGTTGAACATGACTTC ATCGTACTGTTTATCGACCTTGTCTTGATTAAGCCTCAGGTTGGTGAGATCTTGTCGTAATCTCGATGGATAGTC GTTTACATACTGTTACATTTCATTATATAATTTTAGGTCTACCGCCACCTACTGCATAACAGCTTGATGCGCGAT GGTGGTCGTTTCGATGTCAGTATGACCCGATCCGAGATCGAGTGGTGTCAAGACCCGGTCGCAGCTATGATTTTG CGAGACCCCAATTTCGACCACTTTTCGAAAAATGCACTGACAAGCCTTGTATGCTCACTGCTTAGCCATCTATCA TTCGACTCGGAGTCTTGTTACTACTCTTTGACGTTTATCTGACTTGGGCGCGCATCGAGAAGCAAACATCTCCCG CTACGCTACCCGGTGAAATCAATCTTGGCAAGCTTGCGCAACAGCCCATTGTCCTACAATACCTATTTTTCTGTC TGTGCAATCCAAGCCTCGTCACTCACCGAGAATGACTTCTTGTCCCTGATCCTCATCAATGGAACTAATATTTGC GCAGTGATCCTGTGTAGCCTCTCGACATTGGCGTTCCACGTCAGCATTCGCTCTCTTGCTTGTTCATCGCTCTCC CCGTTATGCTCGCTTAAACTTATGGTTCGCCACGCAACTCCGAATTCCGTCTCCACAGCCCTCCTCGTTTCGTCG TCAACCAAACTTTTCCCCATCTTGATGGTAATCTGGGAATACGATGTCCCTGCGGCTGCAAGATCACTAGGCTGG GCTGTTGTAGCCAACAATGTCGAGGCTTTGCGTATACTGCTGGACTGCAAATATCACATCGCTTGCATCCTGGCT ATTGCAGGGGCAGCGTCGCGATGGATCATTGGTAGACTCGTTCTTGCTGCCGCTGGGTTGGGCGATGTCGATTCG ATCAGCGAAGGCAGCGTGGCGGCCGATGGTAAGGCTTTGTGGGCCCTGTTGATGCTGATAAGGGAGTGGGCGGGA CGTCTAGCCGTGGGATGA |