Protein ID | Hirsu2|5965 |
Gene name | |
Location | Contig_3002:574..894 |
Strand | + |
Gene length (bp) | 320 |
Transcript length (bp) | 240 |
Coding sequence length (bp) | 240 |
Protein length (aa) | 80 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0777 | 0.0493 | 0.964 | 0.0368 | 0.0712 | 0.0079 | 0.0446 | 0.151 | 0.0339 | 0.0044 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 17 | 0.999768 |
Orthofinder run ID | 4 |
Orthogroup | 5434 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5965 MKFIAVVIAALASAVAADYECEPGTYSCTQSEKYGHDGWKVCDVSHKWVHGGDCPPKTVCKFDHENDSPYCVPHG FHFP* |
Coding | >Hirsu2|5965 ATGAAGTTCATCGCCGTCGTCATCGCCGCCCTGGCCTCCGCCGTCGCCGCCGACTACGAGTGCGAGCCCGGCACC TACTCCTGCACCCAGAGCGAGAAGTACGGCCACGATGGCTGGAAGGTCTGCGACGTGAGCCACAAGTGGGTCCAT GGCGGCGACTGCCCCCCCAAGACCGTCTGCAAGTTCGACCACGAGAACGACAGCCCCTACTGCGTCCCCCACGGC TTCCACTTCCCATAG |
Transcript | >Hirsu2|5965 ATGAAGTTCATCGCCGTCGTCATCGCCGCCCTGGCCTCCGCCGTCGCCGCCGACTACGAGTGCGAGCCCGGCACC TACTCCTGCACCCAGAGCGAGAAGTACGGCCACGATGGCTGGAAGGTCTGCGACGTGAGCCACAAGTGGGTCCAT GGCGGCGACTGCCCCCCCAAGACCGTCTGCAAGTTCGACCACGAGAACGACAGCCCCTACTGCGTCCCCCACGGC TTCCACTTCCCATAG |
Gene | >Hirsu2|5965 ATGAAGTTCATCGCCGTCGTCATCGCCGCCCTGGCCTCCGCCGTCGCCGCCGACTACGAGTGCGAGCCCGGCACC TACTCCTGCACCCAGAGCGAGAAGTACGGCCACGATGGCTGGAAGGTCTGCGACGTGAGCCACAAGTGGGTCGTA AGTCTTGGCCCTCCTGCGCCTCCAGCTCGAAAAGCGCCTTGTTCGAGTCTCGCTGACGGGCAAATGTGTGCTTTC AGCATGGCGGCGACTGCCCCCCCAAGACCGTCTGCAAGTTCGACCACGAGAACGACAGCCCCTACTGCGTCCCCC ACGGCTTCCACTTCCCATAG |