Protein ID | Hirsu2|5963 |
Gene name | |
Location | Contig_300:19037..21080 |
Strand | - |
Gene length (bp) | 2043 |
Transcript length (bp) | 1749 |
Coding sequence length (bp) | 1749 |
Protein length (aa) | 583 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00615 | RGS | Regulator of G protein signaling domain | 1.1E-05 | 364 | 555 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide|Transmembrane domain | 0.1552 | 0.1348 | 0.0153 | 0.6277 | 0.0433 | 0.0108 | 0.5154 | 0.4537 | 0.3661 | 0.0017 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 20 | 42 | 22 |
2 | 55 | 74 | 19 |
3 | 89 | 111 | 22 |
4 | 153 | 175 | 22 |
5 | 204 | 226 | 22 |
6 | 239 | 261 | 22 |
7 | 271 | 293 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 64 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5963 MGSELGVTADSKPEPVLNTVSIFWASLACVWTALLVAGMAYLVSRRNTPMLRIRGLSLSLAAIVLLHLYWISVQL GTMIGPLAPGDAEFWIMGIYLPFGIALFHASNSRFLHIAEAQKKYLHGSHRSDGVAARSRSKRGVFARFRRLDYT SKILIVVGMGMLFQLFLTILMYLISRKFHRSFGIRGTEIHGTEMQQKMQMGRGWEWWPSVFWQFFWAWIVAPIIL WRSRGINDTQGWRFQTIACSIVNLHAAPMWLIALYVPEMDVVNQYWIPPQWIAVSIMLTEVFTVFLPCWEVMRHQ TLRQETLDSIAQWESKNKAFASGAKSLNSATTMVESMMSGFKSTNGSVRTNDSGESILTMSALEHVLERNPGPLQ QFSALRDFSGENIAFLTSVADWKNSLPPGVRDSTSVQSDKQNKQLLHERFNRALHIYAEFISTRDAEFPINISSQ DLKKLEGVFEKSARSLFGDKRDVDPATPFDTPAFASRPPMTPTSSSFSSEKGIMSPGSQACGAAEDRAQYWGEVP ENFDVAVFDDAEKSIKYLVLTNTWPKFVKDRRSSVDGFESLEAQSDAVMGARNRQVN* |
Coding | >Hirsu2|5963 ATGGGGTCCGAACTCGGGGTCACGGCCGATTCCAAGCCGGAGCCGGTTCTCAACACCGTCAGCATCTTCTGGGCA TCGCTAGCATGCGTCTGGACGGCGCTGCTCGTGGCCGGCATGGCCTACTTGGTATCGCGCCGCAACACGCCTATG CTCCGAATTCGCGGGCTGAGCCTCTCCCTCGCGGCCATCGTGTTGCTCCATCTGTATTGGATCTCAGTCCAGCTC GGAACTATGATCGGGCCCCTGGCGCCAGGCGATGCCGAGTTTTGGATCATGGGCATCTATCTGCCCTTCGGCATT GCCCTCTTCCATGCCTCCAACAGCCGTTTCCTCCACATCGCCGAGGCGCAGAAGAAGTATCTTCATGGCAGCCAC CGCTCTGATGGCGTCGCAGCTCGCTCCAGGAGTAAGCGTGGCGTGTTCGCCCGCTTTCGTCGACTTGACTATACG TCAAAAATCCTCATCGTCGTCGGCATGGGAATGTTGTTTCAGCTCTTCCTCACCATCCTCATGTATCTCATTTCC CGCAAGTTTCACCGGTCCTTTGGCATTCGTGGAACCGAGATTCACGGAACCGAAATGCAGCAGAAAATGCAGATG GGCAGAGGGTGGGAATGGTGGCCTTCCGTGTTTTGGCAGTTCTTCTGGGCCTGGATTGTCGCGCCCATCATCCTC TGGCGATCTCGAGGCATCAACGACACCCAGGGCTGGAGGTTTCAGACCATTGCTTGTTCCATCGTCAATCTACAC GCCGCTCCTATGTGGCTGATTGCCTTGTATGTACCGGAAATGGATGTCGTTAACCAGTACTGGATCCCTCCTCAG TGGATCGCAGTTTCTATCATGTTGACGGAAGTCTTCACCGTCTTCCTGCCTTGCTGGGAGGTGATGCGTCATCAA ACCCTGCGACAGGAGACTCTCGACTCGATCGCTCAGTGGGAGTCGAAGAATAAGGCTTTCGCGTCGGGTGCCAAG TCTCTCAACTCGGCCACTACGATGGTTGAGTCCATGATGTCCGGTTTCAAATCCACAAACGGCTCCGTCAGGACC AACGACTCGGGCGAGAGTATTCTCACCATGAGTGCTCTCGAGCATGTGCTGGAGCGCAATCCCGGCCCACTTCAG CAGTTCTCTGCTCTCAGGGACTTTTCTGGAGAGAACATCGCGTTCCTCACCAGCGTAGCTGACTGGAAGAACTCG CTGCCTCCGGGGGTTCGAGATAGCACCTCGGTGCAAAGCGACAAGCAGAATAAGCAGCTCCTCCACGAGCGATTC AACCGAGCTCTTCACATCTACGCCGAATTCATCAGCACGCGCGACGCGGAATTCCCCATCAACATCTCGTCACAG GATCTGAAGAAGTTGGAGGGTGTTTTCGAGAAATCGGCTCGGTCCCTGTTTGGCGACAAGCGAGATGTCGATCCG GCCACGCCGTTTGACACGCCGGCCTTTGCTTCAAGACCCCCAATGACGCCCACCTCTTCATCGTTCAGTTCCGAA AAGGGCATCATGTCACCTGGTTCTCAAGCCTGCGGCGCGGCTGAGGACCGCGCCCAGTATTGGGGCGAGGTCCCC GAAAACTTCGACGTGGCGGTCTTCGACGATGCCGAGAAGAGCATCAAATATCTTGTGCTCACCAACACCTGGCCT AAATTTGTAAAGGATCGCAGGTCGTCCGTCGATGGTTTTGAAAGTCTGGAGGCTCAGAGCGACGCCGTTATGGGG GCTCGTAATCGCCAGGTGAATTGA |
Transcript | >Hirsu2|5963 ATGGGGTCCGAACTCGGGGTCACGGCCGATTCCAAGCCGGAGCCGGTTCTCAACACCGTCAGCATCTTCTGGGCA TCGCTAGCATGCGTCTGGACGGCGCTGCTCGTGGCCGGCATGGCCTACTTGGTATCGCGCCGCAACACGCCTATG CTCCGAATTCGCGGGCTGAGCCTCTCCCTCGCGGCCATCGTGTTGCTCCATCTGTATTGGATCTCAGTCCAGCTC GGAACTATGATCGGGCCCCTGGCGCCAGGCGATGCCGAGTTTTGGATCATGGGCATCTATCTGCCCTTCGGCATT GCCCTCTTCCATGCCTCCAACAGCCGTTTCCTCCACATCGCCGAGGCGCAGAAGAAGTATCTTCATGGCAGCCAC CGCTCTGATGGCGTCGCAGCTCGCTCCAGGAGTAAGCGTGGCGTGTTCGCCCGCTTTCGTCGACTTGACTATACG TCAAAAATCCTCATCGTCGTCGGCATGGGAATGTTGTTTCAGCTCTTCCTCACCATCCTCATGTATCTCATTTCC CGCAAGTTTCACCGGTCCTTTGGCATTCGTGGAACCGAGATTCACGGAACCGAAATGCAGCAGAAAATGCAGATG GGCAGAGGGTGGGAATGGTGGCCTTCCGTGTTTTGGCAGTTCTTCTGGGCCTGGATTGTCGCGCCCATCATCCTC TGGCGATCTCGAGGCATCAACGACACCCAGGGCTGGAGGTTTCAGACCATTGCTTGTTCCATCGTCAATCTACAC GCCGCTCCTATGTGGCTGATTGCCTTGTATGTACCGGAAATGGATGTCGTTAACCAGTACTGGATCCCTCCTCAG TGGATCGCAGTTTCTATCATGTTGACGGAAGTCTTCACCGTCTTCCTGCCTTGCTGGGAGGTGATGCGTCATCAA ACCCTGCGACAGGAGACTCTCGACTCGATCGCTCAGTGGGAGTCGAAGAATAAGGCTTTCGCGTCGGGTGCCAAG TCTCTCAACTCGGCCACTACGATGGTTGAGTCCATGATGTCCGGTTTCAAATCCACAAACGGCTCCGTCAGGACC AACGACTCGGGCGAGAGTATTCTCACCATGAGTGCTCTCGAGCATGTGCTGGAGCGCAATCCCGGCCCACTTCAG CAGTTCTCTGCTCTCAGGGACTTTTCTGGAGAGAACATCGCGTTCCTCACCAGCGTAGCTGACTGGAAGAACTCG CTGCCTCCGGGGGTTCGAGATAGCACCTCGGTGCAAAGCGACAAGCAGAATAAGCAGCTCCTCCACGAGCGATTC AACCGAGCTCTTCACATCTACGCCGAATTCATCAGCACGCGCGACGCGGAATTCCCCATCAACATCTCGTCACAG GATCTGAAGAAGTTGGAGGGTGTTTTCGAGAAATCGGCTCGGTCCCTGTTTGGCGACAAGCGAGATGTCGATCCG GCCACGCCGTTTGACACGCCGGCCTTTGCTTCAAGACCCCCAATGACGCCCACCTCTTCATCGTTCAGTTCCGAA AAGGGCATCATGTCACCTGGTTCTCAAGCCTGCGGCGCGGCTGAGGACCGCGCCCAGTATTGGGGCGAGGTCCCC GAAAACTTCGACGTGGCGGTCTTCGACGATGCCGAGAAGAGCATCAAATATCTTGTGCTCACCAACACCTGGCCT AAATTTGTAAAGGATCGCAGGTCGTCCGTCGATGGTTTTGAAAGTCTGGAGGCTCAGAGCGACGCCGTTATGGGG GCTCGTAATCGCCAGGTGAATTGA |
Gene | >Hirsu2|5963 ATGGGGTCCGAACTCGGGGTCACGGCCGATTCCAAGCCGGAGCCGGTTCTCAACACCGTCAGCATCTTCTGGGCA TCGCTAGCATGCGTCTGGACGGCGCTGCTCGTGGCCGGCATGGCCTACTTGGTATCGCGCCGCAACACGCCTATG CTCCGAATTCGCGGGCTGAGCCTCTCCCTCGCGGCCATCGTGTTGCTCCATCTGTATTGGATCTCAGTCCAGCTC GGAACTATGATCGGGCCCCTGGCGCCAGGCGATGCCGAGTTTTGGATCATGGGCATCTATCTGCCCTTCGGCATT GCCCTCTTCCATGCCTCCAACAGCCGTTTCCTCCACATCGCCGAGGCGCAGAAGAAGTATCTTCATGGCAGCCAC CGCTCTGATGGCGTCGCAGCTCGCTCCAGGAGTAAGCGTGGCGTGTTCGCCCGCTTTCGTCGACTTGACTATACG TCAAAAATCCTCATCGTCGTCGGCATGGGAATGTTGTTTCAGGTGAGAAAGAGCACACTCTCGTTGCCACCACGA GATCAAACCCCCGGCAGCGTGACTTCTTGCTGACTTTACCCCAAATCCACAGCTCTTCCTCACCATCCTCATGTA TCTCATTTCCCGCAAGTTTCACCGGTCCTTTGGCATTCGTGGAACCGAGATTCACGGAACCGAAATGCAGCAGAA AATGCAGATGGGCAGAGGGTGGGAATGGTAAGAAGCCTGAACATTCGGCTCTGTTCATGGTATGGCTCGATATCC TGACAAAACTCTCGGCGCGAACAGGTGGCCTTCCGTGTTTTGGCAGTTCTTCTGGGCCTGGATTGTCGCGCCCAT CATCCTCTGGCGATCTCGAGGCATCAACGACACCCAGGGCTGGAGGTTTCAGACCATTGCTTGTTCCATCGTCAA GTAAGAAGAGTTCAAGCCCTTCCTGTTCTTAAAACGAAAGAACACTTTACTGACAGATGCCAGTCTACACGCCGC TCCTATGTGGCTGATTGCCTTGTATGTACCGGAAATGGATGTCGTTAACCAGTACTGGATCCCTCCTCAGTGGTA TGTTATCGACCAATCTTGCTTCTCAATAGTCGTCGATCTTCTGAAGTGTCTGACACTTTGTCCCGAAACAGGATC GCAGTTTCTATCATGTTGACGGAAGTCTTCACCGTCTTCCTGCCTTGCTGGGAGGTGATGCGTCATCAAACCCTG CGACAGGAGACTCTCGACTCGATCGCTCAGTGGGAGTCGAAGAATAAGGCTTTCGCGTCGGGTGCCAAGTCTCTC AACTCGGCCACTACGATGGTTGAGTCCATGATGTCCGGTTTCAAATCCACAAACGGCTCCGTCAGGACCAACGAC TCGGGCGAGAGTATTCTCACCATGAGTGCTCTCGAGCATGTGCTGGAGCGCAATCCCGGCCCACTTCAGCAGTTC TCTGCTCTCAGGGACTTTTCTGGAGAGAACATCGCGTTCCTCACCAGCGTAGCTGACTGGAAGAACTCGCTGCCT CCGGGGGTTCGAGATAGCACCTCGGTGCAAAGCGACAAGCAGAATAAGCAGCTCCTCCACGAGCGATTCAACCGA GCTCTTCACATCTACGCCGAATTCATCAGCACGCGCGACGCGGAATTCCCCATCAACATCTCGTCACAGGATCTG AAGAAGTTGGAGGGTGTTTTCGAGAAATCGGCTCGGTCCCTGTTTGGCGACAAGCGAGATGTCGATCCGGCCACG CCGTTTGACACGCCGGCCTTTGCTTCAAGACCCCCAATGACGCCCACCTCTTCATCGTTCAGTTCCGAAAAGGGC ATCATGTCACCTGGTTCTCAAGCCTGCGGCGCGGCTGAGGACCGCGCCCAGTATTGGGGCGAGGTCCCCGAAAAC TTCGACGTGGCGGTCTTCGACGATGCCGAGAAGAGCATCAAATATCTTGTGCTCACCAACACCTGGCCTAAATTT GTAAAGGATCGCAGGTCGTCCGTCGATGGTTTTGAAAGTCTGGAGGCTCAGAGCGACGCCGTTATGGGGGCTCGT AATCGCCAGGTGAATTGA |