© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5958 |
| Gene name | |
| Location | Contig_30:56040..57062 |
| Strand | + |
| Gene length (bp) | 1022 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 4.4E-11 | 3 | 316 |
| PF06609 | TRI12 | Fungal trichothecene efflux pump (TRI12) | 2.9E-11 | 83 | 308 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| 2 | 39 | 58 | 19 |
| 3 | 73 | 95 | 22 |
| 4 | 116 | 137 | 21 |
| 5 | 147 | 164 | 17 |
| 6 | 185 | 207 | 22 |
| 7 | 220 | 242 | 22 |
| 8 | 249 | 268 | 19 |
| 9 | 278 | 300 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5958 MNMAIAGFCIIGISFGVQPLLHTVTSEVLPRRWRAWGQAADMASNGLGSICGLLVGGALNRTNDPASDGFRRYYL MGMAWFVGAALLCAIVYTPPETAAQRLYRGRTADKLKMLDWVGYLLLAAGLVLFCVGLSLSQNPYPWTDPKVSAT FATGIVLAFCLVGYETFVKRDGMFHHGLFTRDRNFSIALFCVFAEGMAFFAANIYFAFEVSVLYETDAVLVGTRY GIMLVCSMVGAALAGLYCDITRRVRWATVLAFVIFVVFFSCMAIADRHSNTAVWGYPVLLGFALGITLTTLVTVC QLSPAPELIAIASGLVINE* |
| Coding | >Hirsu2|5958 ATGAACATGGCCATCGCCGGCTTCTGCATCATAGGCATCTCCTTCGGCGTCCAACCTCTCCTTCACACCGTCACG TCTGAGGTGCTACCCCGGCGATGGCGCGCCTGGGGCCAGGCCGCCGATATGGCCTCCAACGGCCTGGGTAGCATC TGCGGCCTTCTGGTCGGCGGAGCCCTTAACCGGACAAACGACCCGGCCTCGGACGGCTTCCGCCGCTACTATCTC ATGGGCATGGCCTGGTTCGTCGGCGCCGCCCTCCTGTGCGCCATCGTCTACACCCCTCCTGAGACGGCGGCCCAG AGGCTGTATCGCGGCCGCACCGCCGACAAGCTCAAGATGCTCGACTGGGTCGGCTACCTGCTCCTGGCCGCCGGC CTCGTCCTCTTCTGCGTCGGCCTGTCTCTCTCCCAGAACCCCTACCCGTGGACGGACCCGAAAGTGTCCGCCACG TTCGCCACCGGCATAGTCCTAGCTTTTTGTCTCGTCGGCTACGAGACCTTCGTTAAGCGCGACGGCATGTTCCAC CACGGCCTGTTCACTCGCGACCGCAATTTCTCCATCGCCTTATTCTGTGTTTTTGCCGAGGGCATGGCGTTCTTC GCCGCAAACATCTACTTCGCGTTCGAAGTCAGCGTCCTATACGAGACTGATGCCGTCCTTGTTGGGACGCGCTAC GGCATCATGCTTGTCTGCTCCATGGTCGGCGCCGCGCTCGCTGGACTGTACTGCGATATTACTCGCCGCGTGCGC TGGGCAACTGTCCTGGCCTTCGTCATCTTTGTCGTCTTCTTTTCTTGCATGGCCATTGCCGATCGTCACTCTAAC ACGGCCGTCTGGGGGTATCCTGTGCTTCTGGGATTTGCACTCGGCATCACGTTGACGACCCTCGTCACCGTCTGC CAGCTATCGCCGGCCCCTGAACTGATAGCCATTGCCTCCGGCCTGGTCATAAATGAATAA |
| Transcript | >Hirsu2|5958 ATGAACATGGCCATCGCCGGCTTCTGCATCATAGGCATCTCCTTCGGCGTCCAACCTCTCCTTCACACCGTCACG TCTGAGGTGCTACCCCGGCGATGGCGCGCCTGGGGCCAGGCCGCCGATATGGCCTCCAACGGCCTGGGTAGCATC TGCGGCCTTCTGGTCGGCGGAGCCCTTAACCGGACAAACGACCCGGCCTCGGACGGCTTCCGCCGCTACTATCTC ATGGGCATGGCCTGGTTCGTCGGCGCCGCCCTCCTGTGCGCCATCGTCTACACCCCTCCTGAGACGGCGGCCCAG AGGCTGTATCGCGGCCGCACCGCCGACAAGCTCAAGATGCTCGACTGGGTCGGCTACCTGCTCCTGGCCGCCGGC CTCGTCCTCTTCTGCGTCGGCCTGTCTCTCTCCCAGAACCCCTACCCGTGGACGGACCCGAAAGTGTCCGCCACG TTCGCCACCGGCATAGTCCTAGCTTTTTGTCTCGTCGGCTACGAGACCTTCGTTAAGCGCGACGGCATGTTCCAC CACGGCCTGTTCACTCGCGACCGCAATTTCTCCATCGCCTTATTCTGTGTTTTTGCCGAGGGCATGGCGTTCTTC GCCGCAAACATCTACTTCGCGTTCGAAGTCAGCGTCCTATACGAGACTGATGCCGTCCTTGTTGGGACGCGCTAC GGCATCATGCTTGTCTGCTCCATGGTCGGCGCCGCGCTCGCTGGACTGTACTGCGATATTACTCGCCGCGTGCGC TGGGCAACTGTCCTGGCCTTCGTCATCTTTGTCGTCTTCTTTTCTTGCATGGCCATTGCCGATCGTCACTCTAAC ACGGCCGTCTGGGGGTATCCTGTGCTTCTGGGATTTGCACTCGGCATCACGTTGACGACCCTCGTCACCGTCTGC CAGCTATCGCCGGCCCCTGAACTGATAGCCATTGCCTCCGGCCTGGTCATAAATGAATAA |
| Gene | >Hirsu2|5958 ATGAACATGGCCATCGCCGGCTTCTGCATCATAGGCATCTCCTTCGGCGTCCAACCTCTCCTTCACACCGTCACG TCTGAGGTGCTACCCCGGCGATGGCGCGCCTGGGGCCAGGCCGCCGATATGGCCTCCAACGGCCTGGGTAGCATC TGCGGCCTTCTGGTCGGCGGAGCCCTTAACCGGACAAACGACCCGGCCTCGGACGGCTTCCGCCGCTACTATCTC ATGGGCATGGCCTGGTTCGTCGGCGCCGCCCTCCTGTGCGCCATCGTCTACACCCCTCCTGAGACGGCGGCCCAG AGGCTGTATCGCGGCCGCACCGCCGACAAGCTCAAGATGCTCGACTGGGTCGGCTACCTGCTCCTGGCCGCCGGC CTCGTCCTCTTCTGCGTCGGCCTGTCTCTCTCCCAGAACCCCTACCCGTGGACGGACCCGAAAGTGTCCGCCACG TTCGCCACCGGCATAGTCCTAGCTTTTTGTCTCGTCGGCTACGAGACCTTCGTTAAGCGCGACGGCATGTTCCAC CACGGCCTGTTCACTCGCGACCGCAATTTCTCCATCGCCTTATTCTGTGTTTTTGCCGAGGGCATGGCGTTCTTC GCCGCAAACATCTACTTCGCGTTCGAAGTCAGCGTCCTATACGAGACTGATGCCGTCCTTGTTGGGACGCGCTAC GGCATCATGCTTGTCTGCTCCATGGTCGGCGCCGCGCTCGCTGGACTGTACTGCGATATTACTCGCCGCGTGCGC TGGGCAACTGTCCTGGCCTTCGTCATCTTTGTCGTCTTCTTTTCTTGCATGGCCATTGCCGATCGTCACTCTAAC ACGGCCGTCTGGGGGTATCCTGTGCTTCTGGGATTTGCACTCGGCATCACGTTGACGACCCTCGTCACCGTCTGC CAGCTATCGCCGGCCCCTGAACTGATAGCCATTGCCTCCGGCCTGGTCATAAGTGTACGGTCTCTCGGTGGCACG GTTGGCATCGCCATCTGGAATTCCCTCTTCACCTCTCAGATGAATAA |