© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|5948 |
| Gene name | |
| Location | Contig_30:15757..17243 |
| Strand | + |
| Gene length (bp) | 1486 |
| Transcript length (bp) | 1428 |
| Coding sequence length (bp) | 1428 |
| Protein length (aa) | 476 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 1.9E-16 | 346 | 417 |
| PF00487 | FA_desaturase | Fatty acid desaturase | 9.1E-16 | 69 | 274 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12618|ACO1_AJECA | Acyl-CoA desaturase OS=Ajellomyces capsulatus GN=OLE1 PE=1 SV=1 | 12 | 458 | 0.0E+00 |
| sp|O94523|ACO1_SCHPO | Probable acyl-CoA desaturase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1281.06c PE=3 SV=1 | 39 | 457 | 2.0E-130 |
| sp|P21147|ACO1_YEAST | Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OLE1 PE=1 SV=2 | 39 | 418 | 1.0E-119 |
| sp|Q2KIA4|SCD5_BOVIN | Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1 | 44 | 316 | 9.0E-59 |
| sp|Q86SK9|SCD5_HUMAN | Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 PE=1 SV=2 | 42 | 316 | 2.0E-57 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12618|ACO1_AJECA | Acyl-CoA desaturase OS=Ajellomyces capsulatus GN=OLE1 PE=1 SV=1 | 12 | 458 | 0.0E+00 |
| sp|O94523|ACO1_SCHPO | Probable acyl-CoA desaturase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1281.06c PE=3 SV=1 | 39 | 457 | 2.0E-130 |
| sp|P21147|ACO1_YEAST | Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OLE1 PE=1 SV=2 | 39 | 418 | 1.0E-119 |
| sp|Q2KIA4|SCD5_BOVIN | Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1 | 44 | 316 | 9.0E-59 |
| sp|Q86SK9|SCD5_HUMAN | Stearoyl-CoA desaturase 5 OS=Homo sapiens GN=SCD5 PE=1 SV=2 | 42 | 316 | 2.0E-57 |
| sp|G5EGN2|FAT6_CAEEL | Delta(9)-fatty-acid desaturase fat-6 OS=Caenorhabditis elegans GN=fat-6 PE=2 SV=1 | 69 | 279 | 7.0E-54 |
| sp|G5EGH6|FAT7_CAEEL | Delta(9)-fatty-acid desaturase fat-7 OS=Caenorhabditis elegans GN=fat-7 PE=2 SV=1 | 28 | 322 | 1.0E-53 |
| sp|G5ED44|FAT5_CAEEL | Delta(9)-fatty-acid desaturase fat-5 OS=Caenorhabditis elegans GN=fat-5 PE=2 SV=1 | 11 | 322 | 3.0E-52 |
| sp|P13516|ACOD1_MOUSE | Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=1 SV=2 | 46 | 291 | 3.0E-52 |
| sp|Q95MI7|ACOD_CAPHI | Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV=1 | 53 | 291 | 3.0E-52 |
| sp|O62849|ACOD_SHEEP | Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1 | 53 | 291 | 9.0E-52 |
| sp|O00767|ACOD_HUMAN | Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV=2 | 46 | 291 | 1.0E-51 |
| sp|O44390|ACO11_TRINI | Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni GN=D11DS PE=1 SV=2 | 54 | 334 | 5.0E-51 |
| sp|P13011|ACOD2_MOUSE | Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=1 SV=2 | 46 | 306 | 5.0E-51 |
| sp|O02858|ACOD_PIG | Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SCD PE=2 SV=1 | 46 | 291 | 5.0E-51 |
| sp|Q6P7B9|ACOD2_RAT | Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2 PE=2 SV=1 | 46 | 306 | 6.0E-51 |
| sp|Q99PL7|SCD3_MOUSE | Acyl-CoA desaturase 3 OS=Mus musculus GN=Scd3 PE=1 SV=1 | 46 | 291 | 1.0E-50 |
| sp|Q6US81|ACO11_SPOLI | Acyl-CoA Delta(11) desaturase OS=Spodoptera littoralis PE=1 SV=1 | 57 | 277 | 1.0E-49 |
| sp|Q64420|ACOD_MESAU | Acyl-CoA desaturase OS=Mesocricetus auratus GN=SCD PE=2 SV=1 | 46 | 291 | 2.0E-49 |
| sp|Q75PL7|DESAT_BOMMO | (11Z)-hexadec-11-enoyl-CoA conjugase OS=Bombyx mori GN=desat1 PE=1 SV=1 | 57 | 326 | 2.0E-49 |
| sp|P07308|ACOD1_RAT | Acyl-CoA desaturase 1 OS=Rattus norvegicus GN=Scd1 PE=1 SV=2 | 46 | 291 | 3.0E-49 |
| sp|Q92038|ACOD_CYPCA | Acyl-CoA desaturase OS=Cyprinus carpio PE=2 SV=2 | 43 | 323 | 1.0E-48 |
| sp|Q9TT94|ACOD_BOVIN | Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2 | 53 | 291 | 5.0E-48 |
| sp|Q8ISS3|ACO11_CHORO | Acyl-CoA Delta(11) desaturase OS=Choristoneura rosaceana PE=1 SV=1 | 57 | 319 | 2.0E-47 |
| sp|Q6T707|SCD4_MOUSE | Acyl-CoA desaturase 4 OS=Mus musculus GN=Scd4 PE=1 SV=1 | 46 | 291 | 4.0E-47 |
| sp|O65797|ADS1_ARATH | Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1 | 18 | 305 | 1.0E-33 |
| sp|Q949X0|ADS3_ARATH | Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2 | 57 | 317 | 4.0E-32 |
| sp|Q9LMI4|ADSL4_ARATH | Delta-9 desaturase-like 4 protein OS=Arabidopsis thaliana GN=At1g06350 PE=2 SV=2 | 57 | 317 | 3.0E-31 |
| sp|Q9LVZ3|ADS32_ARATH | Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3.2 PE=2 SV=3 | 24 | 305 | 3.0E-30 |
| sp|Q9LND9|ADSL1_ARATH | Delta-9 desaturase-like 1 protein OS=Arabidopsis thaliana GN=At1g06090 PE=2 SV=1 | 55 | 305 | 1.0E-29 |
| sp|Q9FV68|ICO5D_LIMDO | Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii PE=1 SV=1 | 17 | 318 | 4.0E-29 |
| sp|Q9FPD5|ADSL3_ARATH | Delta-9 desaturase-like 3 protein OS=Arabidopsis thaliana GN=At1g06120 PE=2 SV=1 | 15 | 305 | 6.0E-29 |
| sp|Q9LMI3|ADSL5_ARATH | Delta-9 desaturase-like 5 protein OS=Arabidopsis thaliana GN=At1g06360 PE=2 SV=1 | 69 | 317 | 1.0E-28 |
| sp|Q9LND8|ADSL2_ARATH | Delta-9 desaturase-like 2 protein OS=Arabidopsis thaliana GN=At1g06100 PE=2 SV=1 | 7 | 305 | 3.0E-28 |
| sp|Q9SID2|ADS2_ARATH | Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2 | 68 | 317 | 6.0E-28 |
| sp|O94391|CYB51_SCHPO | Probable cytochrome b5 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.16c PE=3 SV=1 | 344 | 433 | 3.0E-07 |
| sp|P40934|CYB5_BRAOB | Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1 | 342 | 417 | 3.0E-07 |
| sp|Q42342|CYB5E_ARATH | Cytochrome b5 isoform E OS=Arabidopsis thaliana GN=CYTB5-E PE=1 SV=2 | 342 | 441 | 4.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 44 | 66 | 22 |
| 2 | 73 | 95 | 22 |
| 3 | 105 | 127 | 22 |
| 4 | 186 | 208 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5948 MVLTLEASTPKADGGLRNQPDLNRRRMPNETRARMNRCHWYRTIQWTNVVFDVLVPLCGLISAFWVRLQWRTLVF SVVYYLASMLGITAGYHRLWSHTSYRAEWPVQLFLAFTGAAAIQGPIRTWARVHRVHHRYTDSDKDPHSINKGFF FAHMGWLILKGNDEGLENIDISDLDANPIVAWQFRNFATIAIFSAFLFPMLFAGLSWGDYCGGLIYAGALRGFVV QQLTFCVNSIAHYVGEQPFDDRLSPRNNTLLAAFTLGEGYHNFHHEFPADYRHSHEWRLFDTTAWIIRFWKYLEI ASDLKQFRANEVEKSRLQQCQKTLEKRQSQIDWGRPLALLPIVEWDEYIEEAKNGRCIMVIAGIVHDVTTFVTKH PGGKRIISTGIGKDATAMFNGGVYCHSNAAHNMLVRMRVGVIRGGGEVENLKRQAQPREDALPADELALRAGRHM TKVVTPISRREGRITTMDSKIDNMK* |
| Coding | >Hirsu2|5948 ATGGTATTGACACTCGAGGCCTCGACACCCAAGGCCGACGGCGGCCTCCGGAATCAACCGGACTTGAACCGGCGC CGAATGCCAAATGAAACCAGGGCTAGAATGAATCGGTGCCATTGGTACAGGACGATACAATGGACAAACGTCGTC TTTGATGTTTTGGTTCCGCTTTGCGGCCTCATCTCGGCATTCTGGGTGCGCTTGCAGTGGAGAACCCTCGTGTTT TCGGTAGTGTACTACCTCGCCAGCATGCTTGGTATAACAGCCGGGTATCACCGATTGTGGTCTCATACTTCGTAC AGAGCGGAATGGCCGGTACAACTGTTCCTGGCTTTCACCGGTGCCGCAGCAATTCAGGGTCCCATCCGAACTTGG GCCCGTGTACACCGCGTTCACCATCGATACACCGATTCGGACAAAGACCCCCACTCGATCAATAAGGGTTTTTTT TTTGCCCACATGGGTTGGCTGATTTTGAAAGGAAACGACGAAGGCCTCGAGAACATTGATATTTCCGATCTGGAC GCGAACCCGATAGTCGCATGGCAATTTCGCAACTTTGCCACGATTGCTATCTTCTCGGCTTTCCTATTCCCCATG CTCTTTGCAGGCCTTTCTTGGGGCGACTATTGCGGGGGCCTCATCTACGCGGGTGCTTTACGCGGCTTTGTCGTT CAGCAACTCACTTTCTGCGTAAACTCGATTGCGCATTATGTAGGCGAGCAACCCTTTGATGATCGTCTGAGTCCT CGGAATAATACACTTCTCGCCGCCTTCACCCTAGGCGAGGGATACCACAACTTTCATCACGAATTTCCCGCAGAT TATCGACATTCCCATGAATGGCGACTTTTCGACACCACCGCATGGATTATCCGGTTCTGGAAATATCTTGAAATA GCCTCCGACCTAAAGCAGTTTCGAGCCAACGAGGTCGAGAAAAGCCGTCTTCAACAGTGCCAGAAGACGCTAGAA AAAAGGCAGAGCCAAATCGATTGGGGTCGACCTCTGGCCTTGTTACCTATCGTGGAGTGGGACGAGTATATTGAG GAAGCCAAGAATGGTCGATGTATTATGGTGATTGCCGGTATTGTGCACGATGTTACGACCTTTGTAACAAAGCAT CCAGGAGGAAAAAGAATAATTTCGACTGGTATAGGAAAGGATGCTACCGCGATGTTCAACGGCGGTGTCTACTGT CACTCCAACGCCGCCCATAACATGTTGGTGAGGATGAGAGTCGGCGTGATTCGAGGCGGTGGCGAAGTTGAAAAC TTGAAGCGTCAGGCGCAGCCTCGTGAGGATGCATTGCCTGCCGACGAGCTGGCTCTCAGGGCTGGACGGCATATG ACCAAGGTGGTAACTCCGATTTCGAGGCGTGAGGGAAGGATCACGACAATGGATTCAAAGATAGACAACATGAAA TAA |
| Transcript | >Hirsu2|5948 ATGGTATTGACACTCGAGGCCTCGACACCCAAGGCCGACGGCGGCCTCCGGAATCAACCGGACTTGAACCGGCGC CGAATGCCAAATGAAACCAGGGCTAGAATGAATCGGTGCCATTGGTACAGGACGATACAATGGACAAACGTCGTC TTTGATGTTTTGGTTCCGCTTTGCGGCCTCATCTCGGCATTCTGGGTGCGCTTGCAGTGGAGAACCCTCGTGTTT TCGGTAGTGTACTACCTCGCCAGCATGCTTGGTATAACAGCCGGGTATCACCGATTGTGGTCTCATACTTCGTAC AGAGCGGAATGGCCGGTACAACTGTTCCTGGCTTTCACCGGTGCCGCAGCAATTCAGGGTCCCATCCGAACTTGG GCCCGTGTACACCGCGTTCACCATCGATACACCGATTCGGACAAAGACCCCCACTCGATCAATAAGGGTTTTTTT TTTGCCCACATGGGTTGGCTGATTTTGAAAGGAAACGACGAAGGCCTCGAGAACATTGATATTTCCGATCTGGAC GCGAACCCGATAGTCGCATGGCAATTTCGCAACTTTGCCACGATTGCTATCTTCTCGGCTTTCCTATTCCCCATG CTCTTTGCAGGCCTTTCTTGGGGCGACTATTGCGGGGGCCTCATCTACGCGGGTGCTTTACGCGGCTTTGTCGTT CAGCAACTCACTTTCTGCGTAAACTCGATTGCGCATTATGTAGGCGAGCAACCCTTTGATGATCGTCTGAGTCCT CGGAATAATACACTTCTCGCCGCCTTCACCCTAGGCGAGGGATACCACAACTTTCATCACGAATTTCCCGCAGAT TATCGACATTCCCATGAATGGCGACTTTTCGACACCACCGCATGGATTATCCGGTTCTGGAAATATCTTGAAATA GCCTCCGACCTAAAGCAGTTTCGAGCCAACGAGGTCGAGAAAAGCCGTCTTCAACAGTGCCAGAAGACGCTAGAA AAAAGGCAGAGCCAAATCGATTGGGGTCGACCTCTGGCCTTGTTACCTATCGTGGAGTGGGACGAGTATATTGAG GAAGCCAAGAATGGTCGATGTATTATGGTGATTGCCGGTATTGTGCACGATGTTACGACCTTTGTAACAAAGCAT CCAGGAGGAAAAAGAATAATTTCGACTGGTATAGGAAAGGATGCTACCGCGATGTTCAACGGCGGTGTCTACTGT CACTCCAACGCCGCCCATAACATGTTGGTGAGGATGAGAGTCGGCGTGATTCGAGGCGGTGGCGAAGTTGAAAAC TTGAAGCGTCAGGCGCAGCCTCGTGAGGATGCATTGCCTGCCGACGAGCTGGCTCTCAGGGCTGGACGGCATATG ACCAAGGTGGTAACTCCGATTTCGAGGCGTGAGGGAAGGATCACGACAATGGATTCAAAGATAGACAACATGAAA TAA |
| Gene | >Hirsu2|5948 ATGGTATTGACACTCGAGGCCTCGACACCCAAGGCCGACGGCGGCCTCCGGAATCAACCGGACTTGAACCGGCGC CGAATGCCAAATGAAACCAGGGCTAGAATGAATCGGTGCCATTGGTACAGGACGATACAATGGACAAACGTCGTC TTTGATGTTTTGGTTCCGCTTTGCGGCCTCATCTCGGCATTCTGGGTGCGCTTGCAGTGGAGAACCCTCGTGTTT TCGGTAGTGTACTACCTCGCCAGCATGCTTGGTATAACAGCCGGTAGGGACCAAAGCATGACACCTTTCAAATTA AGCTGAAGTTAACGCCGATTCCCAAGGGTATCACCGATTGTGGTCTCATACTTCGTACAGAGCGGAATGGCCGGT ACAACTGTTCCTGGCTTTCACCGGTGCCGCAGCAATTCAGGGTCCCATCCGAACTTGGGCCCGTGTACACCGCGT TCACCATCGATACACCGATTCGGACAAAGACCCCCACTCGATCAATAAGGGTTTTTTTTTTGCCCACATGGGTTG GCTGATTTTGAAAGGAAACGACGAAGGCCTCGAGAACATTGATATTTCCGATCTGGACGCGAACCCGATAGTCGC ATGGCAATTTCGCAACTTTGCCACGATTGCTATCTTCTCGGCTTTCCTATTCCCCATGCTCTTTGCAGGCCTTTC TTGGGGCGACTATTGCGGGGGCCTCATCTACGCGGGTGCTTTACGCGGCTTTGTCGTTCAGCAACTCACTTTCTG CGTAAACTCGATTGCGCATTATGTAGGCGAGCAACCCTTTGATGATCGTCTGAGTCCTCGGAATAATACACTTCT CGCCGCCTTCACCCTAGGCGAGGGATACCACAACTTTCATCACGAATTTCCCGCAGATTATCGACATTCCCATGA ATGGCGACTTTTCGACACCACCGCATGGATTATCCGGTTCTGGAAATATCTTGAAATAGCCTCCGACCTAAAGCA GTTTCGAGCCAACGAGGTCGAGAAAAGCCGTCTTCAACAGTGCCAGAAGACGCTAGAAAAAAGGCAGAGCCAAAT CGATTGGGGTCGACCTCTGGCCTTGTTACCTATCGTGGAGTGGGACGAGTATATTGAGGAAGCCAAGAATGGTCG ATGTATTATGGTGATTGCCGGTATTGTGCACGATGTTACGACCTTTGTAACAAAGCATCCAGGAGGAAAAAGAAT AATTTCGACTGGTATAGGAAAGGATGCTACCGCGATGTTCAACGGCGGTGTCTACTGTCACTCCAACGCCGCCCA TAACATGTTGGTGAGGATGAGAGTCGGCGTGATTCGAGGCGGTGGCGAAGTTGAAAACTTGAAGCGTCAGGCGCA GCCTCGTGAGGATGCATTGCCTGCCGACGAGCTGGCTCTCAGGGCTGGACGGCATATGACCAAGGTGGTAACTCC GATTTCGAGGCGTGAGGGAAGGATCACGACAATGGATTCAAAGATAGACAACATGAAATAA |