Protein ID | Hirsu2|5906 |
Gene name | |
Location | Contig_2994:571..1233 |
Strand | + |
Gene length (bp) | 662 |
Transcript length (bp) | 420 |
Coding sequence length (bp) | 420 |
Protein length (aa) | 140 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.3E-14 | 2 | 102 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 5 | 110 | 3.0E-20 |
sp|Q5KQN0|CAX2_ORYSJ | Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 | 2 | 109 | 1.0E-18 |
sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 2 | 110 | 2.0E-18 |
sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 5 | 109 | 2.0E-18 |
sp|Q9LFZ8|CAX6_ARATH | Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 | 5 | 115 | 3.0E-18 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 5 | 110 | 3.0E-20 |
sp|Q5KQN0|CAX2_ORYSJ | Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 | 2 | 109 | 1.0E-18 |
sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 2 | 110 | 2.0E-18 |
sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 5 | 109 | 2.0E-18 |
sp|Q9LFZ8|CAX6_ARATH | Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 | 5 | 115 | 3.0E-18 |
sp|Q8L783|CAX5_ARATH | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 | 5 | 115 | 5.0E-18 |
sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 2 | 123 | 3.0E-17 |
sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 2 | 107 | 9.0E-17 |
sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 2 | 115 | 7.0E-16 |
sp|Q6YXZ1|CAX4_ORYSJ | Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1 | 2 | 113 | 9.0E-14 |
sp|O34840|CHAA_BACSU | Ca(2+)/H(+) antiporter ChaA OS=Bacillus subtilis (strain 168) GN=chaA PE=1 SV=1 | 7 | 110 | 1.0E-13 |
sp|Q5TKG3|CAX1B_ORYSJ | Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1 | 2 | 116 | 3.0E-13 |
sp|Q945S5|CAX4_ARATH | Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 | 2 | 102 | 6.0E-11 |
sp|Q39253|CAX1_ARATH | Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 | 2 | 115 | 2.0E-10 |
sp|Q93Z81|CAX3_ARATH | Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1 | 2 | 110 | 1.0E-08 |
sp|Q769E5|CAX1A_ORYSJ | Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 | 1 | 116 | 6.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016021 | integral component of membrane | Yes |
GO:0055085 | transmembrane transport | Yes |
GO:0031224 | intrinsic component of membrane | No |
GO:0009987 | cellular process | No |
GO:0110165 | cellular anatomical entity | No |
GO:0051179 | localization | No |
GO:0005575 | cellular_component | No |
GO:0008150 | biological_process | No |
GO:0051234 | establishment of localization | No |
GO:0006810 | transport | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.2998 | 0.0932 | 0.0653 | 0.5658 | 0.144 | 0.0085 | 0.3376 | 0.8953 | 0.1732 | 0.0198 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 10 | 32 | 22 |
2 | 45 | 67 | 22 |
3 | 82 | 100 | 18 |
Orthofinder run ID | 4 |
Orthogroup | 3249 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5906 LQDQIRIVQASLLGSILANLLLILGMGFFLGGLRYREQIYNSTVTQMSACLLSLSVISLVLPTAFHASFNDPRRA DSESLKISRGTSVILLLVYVIYLLFQLKSHAYMYESTPQHIVDAESIPGPAAAWLDTSSSDDSS* |
Coding | >Hirsu2|5906 CTGCAGGATCAGATTCGCATCGTCCAGGCATCCCTGCTTGGTTCCATCTTGGCCAACCTGCTGCTCATCCTGGGC ATGGGCTTCTTTCTTGGCGGGCTCCGATATCGTGAGCAGATCTACAACAGCACCGTGACGCAGATGAGCGCCTGC CTGCTCAGCCTGAGCGTCATCAGCCTCGTGCTGCCGACCGCCTTTCATGCTTCTTTCAACGACCCGCGCCGGGCC GACTCCGAGTCGCTCAAGATCAGCCGCGGAACCAGCGTGATCCTCCTGCTCGTCTACGTCATCTACCTGCTCTTC CAGCTCAAGTCTCACGCGTACATGTACGAGTCGACGCCGCAGCACATCGTCGACGCCGAGTCGATCCCCGGCCCG GCCGCCGCCTGGCTGGACACGTCGAGCTCCGACGACAGCTCATGA |
Transcript | >Hirsu2|5906 CTGCAGGATCAGATTCGCATCGTCCAGGCATCCCTGCTTGGTTCCATCTTGGCCAACCTGCTGCTCATCCTGGGC ATGGGCTTCTTTCTTGGCGGGCTCCGATATCGTGAGCAGATCTACAACAGCACCGTGACGCAGATGAGCGCCTGC CTGCTCAGCCTGAGCGTCATCAGCCTCGTGCTGCCGACCGCCTTTCATGCTTCTTTCAACGACCCGCGCCGGGCC GACTCCGAGTCGCTCAAGATCAGCCGCGGAACCAGCGTGATCCTCCTGCTCGTCTACGTCATCTACCTGCTCTTC CAGCTCAAGTCTCACGCGTACATGTACGAGTCGACGCCGCAGCACATCGTCGACGCCGAGTCGATCCCCGGCCCG GCCGCCGCCTGGCTGGACACGTCGAGCTCCGACGACAGCTCATGA |
Gene | >Hirsu2|5906 CTGCAGGATCAGATTCGCATCGTCCAGGCATCCCTGCTTGGTTCCATCTTGGCCAACCTGCTGCTCATCCTGGGC ATGGGCTTCTTTCTTGGCGGGCTCCGATATCGTGAGCAGGTGCGCGCGCCCGCCCCCCCGCCGAAGCCGACTGGG AATTCGCGTTGACCCCCGACGCTCCAGATCTACAACAGCACCGTGACGCAGATGAGCGCCTGCCTGCTCAGCCTG AGCGTCATCAGCCTCGTGCTGCCGGTATGTCGCACCCCTGGAACGACCGCCACTGTGCGCCACGTCTTGGCTGAC GCCACGCAGACCGCCTTTCATGCTTCTTTCAACGACCCGCGCCGGGCCGACTCCGAGTCGCTCAAGATCAGCCGC GGAACCAGCGTGGTGAGCCGCCGCCTCAGACCAGCCGCGCTCCTGCAGCCGACGCTAACGGCGCTCTCTCCAGAT CCTCCTGCTCGTCTACGTCATCTACCTGCTCTTCCAGCTCAAGTCTCACGCGTACATGTACGAGTCGACGCCGCA GCACATCGTCGACGCCGAGTCGATCCCCGGCCCGGCCGCCGCCTGGCTGGACACGTCGAGCTCCGACGACAGCTC GTCGTCGAGCTCCGACTCGGACTCGTCCGACCACTCGCGGGATACCGTCCGCCGCAAGATGA |