© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5871 |
| Gene name | |
| Location | Contig_297:15803..17376 |
| Strand | - |
| Gene length (bp) | 1573 |
| Transcript length (bp) | 1389 |
| Coding sequence length (bp) | 1389 |
| Protein length (aa) | 463 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00494 | SQS_PSY | Squalene/phytoene synthase | 2.4E-38 | 48 | 323 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7S4Z6|FDFT_NEUCR | Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 | 3 | 458 | 0.0E+00 |
| sp|Q9Y753|FDFT_YARLI | Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 | 1 | 435 | 5.0E-136 |
| sp|P36596|FDFT_SCHPO | Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 | 12 | 382 | 1.0E-129 |
| sp|O74165|FDFT_CYBJA | Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 | 1 | 397 | 2.0E-123 |
| sp|P78589|FDFT_CANAX | Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 | 4 | 424 | 8.0E-119 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7S4Z6|FDFT_NEUCR | Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 | 3 | 458 | 0.0E+00 |
| sp|Q9Y753|FDFT_YARLI | Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 | 1 | 435 | 5.0E-136 |
| sp|P36596|FDFT_SCHPO | Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 | 12 | 382 | 1.0E-129 |
| sp|O74165|FDFT_CYBJA | Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 | 1 | 397 | 2.0E-123 |
| sp|P78589|FDFT_CANAX | Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 | 4 | 424 | 8.0E-119 |
| sp|P29704|FDFT_YEAST | Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG9 PE=1 SV=2 | 1 | 384 | 3.0E-115 |
| sp|Q752X9|FDFT_ASHGO | Squalene synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG9 PE=3 SV=1 | 9 | 397 | 4.0E-114 |
| sp|Q92459|FDFT_USTMA | Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERG9 PE=3 SV=2 | 1 | 380 | 9.0E-113 |
| sp|Q9HGZ6|FDFT_CANGA | Squalene synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG9 PE=3 SV=2 | 8 | 384 | 2.0E-110 |
| sp|Q5R6U3|FDFT_PONAB | Squalene synthase OS=Pongo abelii GN=FDFT1 PE=2 SV=1 | 7 | 384 | 1.0E-98 |
| sp|P37268|FDFT_HUMAN | Squalene synthase OS=Homo sapiens GN=FDFT1 PE=1 SV=1 | 7 | 384 | 1.0E-98 |
| sp|P53798|FDFT_MOUSE | Squalene synthase OS=Mus musculus GN=Fdft1 PE=1 SV=2 | 7 | 360 | 5.0E-98 |
| sp|Q32KR6|FDFT_BOVIN | Squalene synthase OS=Bos taurus GN=FDFT1 PE=2 SV=1 | 7 | 384 | 1.0E-96 |
| sp|Q02769|FDFT_RAT | Squalene synthase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1 | 7 | 360 | 2.0E-96 |
| sp|Q9SDW9|BSS_BOTBR | Squalene synthase OS=Botryococcus braunii GN=BSS PE=1 SV=1 | 41 | 353 | 5.0E-76 |
| sp|P53800|FDFT_NICBE | Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1 | 1 | 360 | 7.0E-76 |
| sp|P53799|FDFT_ARATH | Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=1 SV=1 | 41 | 360 | 1.0E-74 |
| sp|G0Y287|BOSS_BOTBR | Botryococcus squalene synthase OS=Botryococcus braunii GN=SSL-2 PE=1 SV=1 | 7 | 414 | 2.0E-69 |
| sp|Q54DR1|FDFT_DICDI | Squalene synthase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1 | 7 | 360 | 6.0E-69 |
| sp|G0Y288|BOCS_BOTBR | Botryococcene synthase OS=Botryococcus braunii GN=SSL-3 PE=2 SV=1 | 7 | 367 | 2.0E-64 |
| sp|G0Y286|PSDS_BOTBR | Presqualene diphosphate synthase OS=Botryococcus braunii GN=SSL-1 PE=1 SV=1 | 9 | 332 | 3.0E-53 |
| sp|D5KXJ0|CRTB_ENTAG | All-trans-phytoene synthase OS=Enterobacter agglomerans GN=crtB PE=1 SV=1 | 45 | 310 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009058 | biosynthetic process | Yes |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 408 | 430 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5871 MGALYYLMHPNQLRSIIQWKLWHNPVHTRDSSSESETLKECFRFLNLTSRSFAAVIQELDHELLVPVTLFYLVLR GLDTIEDDMTIPIEKKVPLLQNFHKTMETDGWQFHESQEKDRELLEKFDVVVTELKQIKKPYSDIINDIACKMGN GMADYAQDTKMIKEGVQTIEEYELYCHYVAGLVGEGLTRLFVESSLGNPKLLERPSLTESMGQFLQKTNIIRDIH EDWQDGRRWYPKEIWSKHVDRWEDMLDPKHRDKAVNCVSEMVLDALKHAEECLFYMAGMREQSVFNFVAIPQTMA IATLELVFRNPAVLERNVKITKGDACQIMFESTQNLHTVCEVFRRYARRIHAKNDPRDPNFLAISVRCAKIEQFI ETLFPRQDPKQLSMENAEMQKKEPAMDSGETLVLFGIVTACLLLVSGIMVGMAWFMGARFPIVDDVSRFARTLFS TQQSESGVRDEL* |
| Coding | >Hirsu2|5871 ATGGGCGCTCTCTACTATCTCATGCACCCGAACCAGTTGCGGTCCATTATCCAATGGAAGCTCTGGCACAACCCC GTACACACGCGCGACTCGTCGTCCGAATCGGAAACGCTCAAAGAATGCTTCCGCTTTCTGAACCTGACGAGTCGC AGCTTTGCGGCCGTCATTCAAGAACTCGACCACGAGCTTCTCGTGCCCGTGACCCTCTTCTATCTTGTCCTGCGC GGCCTCGACACCATCGAAGACGACATGACCATACCCATTGAGAAAAAAGTGCCTCTGCTGCAGAATTTTCACAAG ACGATGGAGACTGATGGCTGGCAATTTCACGAAAGCCAAGAGAAGGATCGGGAGCTGCTAGAAAAATTTGATGTT GTTGTTACCGAGCTCAAGCAGATCAAGAAGCCCTACTCCGACATCATCAACGACATCGCCTGCAAGATGGGCAAC GGCATGGCCGACTACGCGCAGGACACCAAGATGATCAAGGAGGGCGTGCAAACGATCGAAGAGTACGAGCTGTAC TGCCACTACGTCGCCGGCTTAGTCGGCGAGGGCCTGACCCGACTCTTCGTCGAGTCCAGCCTCGGCAACCCCAAG CTCCTGGAGCGGCCGTCGTTGACAGAGTCCATGGGCCAGTTCCTGCAGAAGACAAACATTATCCGCGACATTCAC GAAGACTGGCAGGACGGCAGGCGCTGGTACCCCAAGGAGATCTGGAGCAAGCATGTGGACAGGTGGGAGGACATG CTCGACCCAAAGCATCGCGACAAGGCCGTCAACTGCGTCTCGGAAATGGTGCTCGACGCACTGAAGCATGCCGAG GAGTGCCTCTTCTACATGGCTGGCATGCGGGAGCAGAGCGTCTTCAACTTTGTCGCCATCCCCCAGACCATGGCC ATCGCCACTCTCGAGCTCGTCTTCCGGAATCCGGCCGTGCTGGAGAGAAACGTCAAGATCACAAAGGGCGACGCC TGCCAGATCATGTTCGAGTCGACCCAAAACCTGCACACCGTCTGCGAGGTGTTCCGGAGATACGCGCGACGGATA CACGCCAAGAACGACCCTCGCGACCCCAATTTCCTGGCCATCAGCGTGCGCTGTGCCAAGATCGAGCAGTTCATC GAAACGCTCTTCCCGCGGCAGGACCCCAAGCAACTGAGCATGGAGAACGCCGAGATGCAGAAGAAAGAGCCGGCG ATGGATTCGGGCGAGACGTTGGTCCTGTTCGGCATCGTCACCGCCTGCCTGCTCCTCGTGTCAGGCATCATGGTT GGAATGGCCTGGTTTATGGGCGCCCGGTTCCCCATCGTGGACGATGTGTCTAGGTTTGCCCGGACCCTGTTTTCG ACACAACAATCCGAGTCCGGCGTACGCGACGAGCTCTGA |
| Transcript | >Hirsu2|5871 ATGGGCGCTCTCTACTATCTCATGCACCCGAACCAGTTGCGGTCCATTATCCAATGGAAGCTCTGGCACAACCCC GTACACACGCGCGACTCGTCGTCCGAATCGGAAACGCTCAAAGAATGCTTCCGCTTTCTGAACCTGACGAGTCGC AGCTTTGCGGCCGTCATTCAAGAACTCGACCACGAGCTTCTCGTGCCCGTGACCCTCTTCTATCTTGTCCTGCGC GGCCTCGACACCATCGAAGACGACATGACCATACCCATTGAGAAAAAAGTGCCTCTGCTGCAGAATTTTCACAAG ACGATGGAGACTGATGGCTGGCAATTTCACGAAAGCCAAGAGAAGGATCGGGAGCTGCTAGAAAAATTTGATGTT GTTGTTACCGAGCTCAAGCAGATCAAGAAGCCCTACTCCGACATCATCAACGACATCGCCTGCAAGATGGGCAAC GGCATGGCCGACTACGCGCAGGACACCAAGATGATCAAGGAGGGCGTGCAAACGATCGAAGAGTACGAGCTGTAC TGCCACTACGTCGCCGGCTTAGTCGGCGAGGGCCTGACCCGACTCTTCGTCGAGTCCAGCCTCGGCAACCCCAAG CTCCTGGAGCGGCCGTCGTTGACAGAGTCCATGGGCCAGTTCCTGCAGAAGACAAACATTATCCGCGACATTCAC GAAGACTGGCAGGACGGCAGGCGCTGGTACCCCAAGGAGATCTGGAGCAAGCATGTGGACAGGTGGGAGGACATG CTCGACCCAAAGCATCGCGACAAGGCCGTCAACTGCGTCTCGGAAATGGTGCTCGACGCACTGAAGCATGCCGAG GAGTGCCTCTTCTACATGGCTGGCATGCGGGAGCAGAGCGTCTTCAACTTTGTCGCCATCCCCCAGACCATGGCC ATCGCCACTCTCGAGCTCGTCTTCCGGAATCCGGCCGTGCTGGAGAGAAACGTCAAGATCACAAAGGGCGACGCC TGCCAGATCATGTTCGAGTCGACCCAAAACCTGCACACCGTCTGCGAGGTGTTCCGGAGATACGCGCGACGGATA CACGCCAAGAACGACCCTCGCGACCCCAATTTCCTGGCCATCAGCGTGCGCTGTGCCAAGATCGAGCAGTTCATC GAAACGCTCTTCCCGCGGCAGGACCCCAAGCAACTGAGCATGGAGAACGCCGAGATGCAGAAGAAAGAGCCGGCG ATGGATTCGGGCGAGACGTTGGTCCTGTTCGGCATCGTCACCGCCTGCCTGCTCCTCGTGTCAGGCATCATGGTT GGAATGGCCTGGTTTATGGGCGCCCGGTTCCCCATCGTGGACGATGTGTCTAGGTTTGCCCGGACCCTGTTTTCG ACACAACAATCCGAGTCCGGCGTACGCGACGAGCTCTGA |
| Gene | >Hirsu2|5871 ATGGGCGCTCTCTACTATCTCATGCACCCGAACCAGTTGCGGTCCATTATCCAATGGTGAGCACCAGCATCGCGT CTGATTTTGCCTCTTGACTGTGCCGCCGCTGATCCGTGGGCGCAGGAAGCTCTGGCACAACCCCGTACACACGCG CGACTCGTCGTCCGAATCGGAAACGCTCAAAGAATGCTTCCGCTTTCTGAACCTGACGAGTCGCAGCTTTGCGGC CGTCATTCAAGAACTCGACCACGAGCTTCTCGTGCCCGTGACCCTCTTCTATCTTGTCCTGCGCGGCCTCGACAC CATCGAAGACGACATGACCATACCCATTGAGAAAAAAGTGCCTCTGCTGCAGAATTTTCACAAGACGATGGAGAC TGATGGCTGGCAATTTCACGAAAGCCAAGAGAAGGATCGGGAGCTGCTAGAAAAATTTGATGTTGTTGTTACCGA GCTCAAGCAGATCAAGAAGCCCTACTCCGACATCATCAACGACATCGCCTGCAAGATGGGCAACGGCATGGCCGA CTACGCGCAGGACACCAAGATGATCAAGGAGGGCGTGCAAACGATCGAAGAGTACGAGCTGTACTGCCACTACGT CGCCGGCTTAGTCGGCGAGGGCCTGACCCGACTCTTCGTCGAGTCCAGCCTCGGCAACCCCAAGCTCCTGGAGCG GCCGTCGTTGACAGAGTCCATGGGCCAGTTCCTGCAGAAGACAAACATTATCCGCGACATTCACGAAGACTGGCA GGACGGCAGGCGCTGGTACCCCAAGGAGATCTGGAGCAAGCATGTGGACAGGTGGGAGGACATGCTCGACCCAAA GCATCGCGACAAGGCCGTCAACTGCGTCTCGGAAATGGTGCTCGACGCACTGAAGCATGCCGAGGAGTGCCTCTT CTACATGGCTGGCATGCGGGAGCAGAGCGTCTTCAACTTTGTCGCCATCCCCCAGACCATGGCCATCGCCACTCT CGAGCTCGTCTTCCGGAATCCGGCCGTGCTGGAGAGAAACGTCAAGATCACAAAGGGCGACGCCTGCCAGATCAT GTTCGAGTCGACCCAAAACCTGCACACCGTCTGCGAGGTGTTCCGGAGATACGCGCGACGGATACACGCCAAGAA CGACCCTCGCGACCCCAATTTCCTGGCCATCAGCGTGCGCTGTGCCAAGGTATGCACCGTCTCGACGCGTGGCAG ACGGACAAGCTGACGACGATGCGTGACAGATCGAGCAGTTCATCGAAACGCTCTTCCCGCGGCAGGACCCCAAGC AACTGAGCATGGAGAACGCCGAGATGCAGAAGAAAGAGCCGGCGATGGATTCGGGCGAGACGTTGGTCCTGTTCG GCATCGTCACCGCCTGCCTGCTCCTCGTGTCAGGCATCATGGTGAGCAAACCTCGACCGACCAGGGCGGCATGTG CTCGATGCTGACGCACGGAAACCCGTGTCAGGTTGGAATGGCCTGGTTTATGGGCGCCCGGTTCCCCATCGTGGA CGATGTGTCTAGGTTTGCCCGGACCCTGTTTTCGACACAACAATCCGAGTCCGGCGTACGCGACGAGCTCTGA |