Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5871
Gene name
LocationContig_297:15803..17376
Strand-
Gene length (bp)1573
Transcript length (bp)1389
Coding sequence length (bp)1389
Protein length (aa) 463

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00494 SQS_PSY Squalene/phytoene synthase 6.1E-38 48 323

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 3 458 0.0E+00
sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 1 435 5.0E-136
sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 12 382 1.0E-129
sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 1 397 2.0E-123
sp|P78589|FDFT_CANAX Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 4 424 8.0E-119
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Swissprot ID Swissprot Description Start End E-value
sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 3 458 0.0E+00
sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 1 435 5.0E-136
sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 12 382 1.0E-129
sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 1 397 2.0E-123
sp|P78589|FDFT_CANAX Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 4 424 8.0E-119
sp|P29704|FDFT_YEAST Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG9 PE=1 SV=2 1 384 3.0E-115
sp|Q752X9|FDFT_ASHGO Squalene synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG9 PE=3 SV=1 9 397 4.0E-114
sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERG9 PE=3 SV=2 1 380 9.0E-113
sp|Q9HGZ6|FDFT_CANGA Squalene synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG9 PE=3 SV=2 8 384 2.0E-110
sp|Q5R6U3|FDFT_PONAB Squalene synthase OS=Pongo abelii GN=FDFT1 PE=2 SV=1 7 384 1.0E-98
sp|P37268|FDFT_HUMAN Squalene synthase OS=Homo sapiens GN=FDFT1 PE=1 SV=1 7 384 1.0E-98
sp|P53798|FDFT_MOUSE Squalene synthase OS=Mus musculus GN=Fdft1 PE=1 SV=2 7 360 5.0E-98
sp|Q32KR6|FDFT_BOVIN Squalene synthase OS=Bos taurus GN=FDFT1 PE=2 SV=1 7 384 1.0E-96
sp|Q02769|FDFT_RAT Squalene synthase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1 7 360 2.0E-96
sp|Q9SDW9|BSS_BOTBR Squalene synthase OS=Botryococcus braunii GN=BSS PE=1 SV=1 41 353 5.0E-76
sp|P53800|FDFT_NICBE Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1 1 360 7.0E-76
sp|P53799|FDFT_ARATH Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=1 SV=1 41 360 1.0E-74
sp|G0Y287|BOSS_BOTBR Botryococcus squalene synthase OS=Botryococcus braunii GN=SSL-2 PE=1 SV=1 7 414 2.0E-69
sp|Q54DR1|FDFT_DICDI Squalene synthase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1 7 360 6.0E-69
sp|G0Y288|BOCS_BOTBR Botryococcene synthase OS=Botryococcus braunii GN=SSL-3 PE=2 SV=1 7 367 2.0E-64
sp|G0Y286|PSDS_BOTBR Presqualene diphosphate synthase OS=Botryococcus braunii GN=SSL-1 PE=1 SV=1 9 332 3.0E-53
sp|D5KXJ0|CRTB_ENTAG All-trans-phytoene synthase OS=Enterobacter agglomerans GN=crtB PE=1 SV=1 45 310 2.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.45

Transmembrane Domains

Domain # Start End Length
1 408 430 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5871
MGALYYLMHPNQLRSIIQWKLWHNPVHTRDSSSESETLKECFRFLNLTSRSFAAVIQELDHELLVPVTLFYLVLR
GLDTIEDDMTIPIEKKVPLLQNFHKTMETDGWQFHESQEKDRELLEKFDVVVTELKQIKKPYSDIINDIACKMGN
GMADYAQDTKMIKEGVQTIEEYELYCHYVAGLVGEGLTRLFVESSLGNPKLLERPSLTESMGQFLQKTNIIRDIH
EDWQDGRRWYPKEIWSKHVDRWEDMLDPKHRDKAVNCVSEMVLDALKHAEECLFYMAGMREQSVFNFVAIPQTMA
IATLELVFRNPAVLERNVKITKGDACQIMFESTQNLHTVCEVFRRYARRIHAKNDPRDPNFLAISVRCAKIEQFI
ETLFPRQDPKQLSMENAEMQKKEPAMDSGETLVLFGIVTACLLLVSGIMVGMAWFMGARFPIVDDVSRFARTLFS
TQQSESGVRDEL*
Coding >Hirsu2|5871
ATGGGCGCTCTCTACTATCTCATGCACCCGAACCAGTTGCGGTCCATTATCCAATGGAAGCTCTGGCACAACCCC
GTACACACGCGCGACTCGTCGTCCGAATCGGAAACGCTCAAAGAATGCTTCCGCTTTCTGAACCTGACGAGTCGC
AGCTTTGCGGCCGTCATTCAAGAACTCGACCACGAGCTTCTCGTGCCCGTGACCCTCTTCTATCTTGTCCTGCGC
GGCCTCGACACCATCGAAGACGACATGACCATACCCATTGAGAAAAAAGTGCCTCTGCTGCAGAATTTTCACAAG
ACGATGGAGACTGATGGCTGGCAATTTCACGAAAGCCAAGAGAAGGATCGGGAGCTGCTAGAAAAATTTGATGTT
GTTGTTACCGAGCTCAAGCAGATCAAGAAGCCCTACTCCGACATCATCAACGACATCGCCTGCAAGATGGGCAAC
GGCATGGCCGACTACGCGCAGGACACCAAGATGATCAAGGAGGGCGTGCAAACGATCGAAGAGTACGAGCTGTAC
TGCCACTACGTCGCCGGCTTAGTCGGCGAGGGCCTGACCCGACTCTTCGTCGAGTCCAGCCTCGGCAACCCCAAG
CTCCTGGAGCGGCCGTCGTTGACAGAGTCCATGGGCCAGTTCCTGCAGAAGACAAACATTATCCGCGACATTCAC
GAAGACTGGCAGGACGGCAGGCGCTGGTACCCCAAGGAGATCTGGAGCAAGCATGTGGACAGGTGGGAGGACATG
CTCGACCCAAAGCATCGCGACAAGGCCGTCAACTGCGTCTCGGAAATGGTGCTCGACGCACTGAAGCATGCCGAG
GAGTGCCTCTTCTACATGGCTGGCATGCGGGAGCAGAGCGTCTTCAACTTTGTCGCCATCCCCCAGACCATGGCC
ATCGCCACTCTCGAGCTCGTCTTCCGGAATCCGGCCGTGCTGGAGAGAAACGTCAAGATCACAAAGGGCGACGCC
TGCCAGATCATGTTCGAGTCGACCCAAAACCTGCACACCGTCTGCGAGGTGTTCCGGAGATACGCGCGACGGATA
CACGCCAAGAACGACCCTCGCGACCCCAATTTCCTGGCCATCAGCGTGCGCTGTGCCAAGATCGAGCAGTTCATC
GAAACGCTCTTCCCGCGGCAGGACCCCAAGCAACTGAGCATGGAGAACGCCGAGATGCAGAAGAAAGAGCCGGCG
ATGGATTCGGGCGAGACGTTGGTCCTGTTCGGCATCGTCACCGCCTGCCTGCTCCTCGTGTCAGGCATCATGGTT
GGAATGGCCTGGTTTATGGGCGCCCGGTTCCCCATCGTGGACGATGTGTCTAGGTTTGCCCGGACCCTGTTTTCG
ACACAACAATCCGAGTCCGGCGTACGCGACGAGCTCTGA
Transcript >Hirsu2|5871
ATGGGCGCTCTCTACTATCTCATGCACCCGAACCAGTTGCGGTCCATTATCCAATGGAAGCTCTGGCACAACCCC
GTACACACGCGCGACTCGTCGTCCGAATCGGAAACGCTCAAAGAATGCTTCCGCTTTCTGAACCTGACGAGTCGC
AGCTTTGCGGCCGTCATTCAAGAACTCGACCACGAGCTTCTCGTGCCCGTGACCCTCTTCTATCTTGTCCTGCGC
GGCCTCGACACCATCGAAGACGACATGACCATACCCATTGAGAAAAAAGTGCCTCTGCTGCAGAATTTTCACAAG
ACGATGGAGACTGATGGCTGGCAATTTCACGAAAGCCAAGAGAAGGATCGGGAGCTGCTAGAAAAATTTGATGTT
GTTGTTACCGAGCTCAAGCAGATCAAGAAGCCCTACTCCGACATCATCAACGACATCGCCTGCAAGATGGGCAAC
GGCATGGCCGACTACGCGCAGGACACCAAGATGATCAAGGAGGGCGTGCAAACGATCGAAGAGTACGAGCTGTAC
TGCCACTACGTCGCCGGCTTAGTCGGCGAGGGCCTGACCCGACTCTTCGTCGAGTCCAGCCTCGGCAACCCCAAG
CTCCTGGAGCGGCCGTCGTTGACAGAGTCCATGGGCCAGTTCCTGCAGAAGACAAACATTATCCGCGACATTCAC
GAAGACTGGCAGGACGGCAGGCGCTGGTACCCCAAGGAGATCTGGAGCAAGCATGTGGACAGGTGGGAGGACATG
CTCGACCCAAAGCATCGCGACAAGGCCGTCAACTGCGTCTCGGAAATGGTGCTCGACGCACTGAAGCATGCCGAG
GAGTGCCTCTTCTACATGGCTGGCATGCGGGAGCAGAGCGTCTTCAACTTTGTCGCCATCCCCCAGACCATGGCC
ATCGCCACTCTCGAGCTCGTCTTCCGGAATCCGGCCGTGCTGGAGAGAAACGTCAAGATCACAAAGGGCGACGCC
TGCCAGATCATGTTCGAGTCGACCCAAAACCTGCACACCGTCTGCGAGGTGTTCCGGAGATACGCGCGACGGATA
CACGCCAAGAACGACCCTCGCGACCCCAATTTCCTGGCCATCAGCGTGCGCTGTGCCAAGATCGAGCAGTTCATC
GAAACGCTCTTCCCGCGGCAGGACCCCAAGCAACTGAGCATGGAGAACGCCGAGATGCAGAAGAAAGAGCCGGCG
ATGGATTCGGGCGAGACGTTGGTCCTGTTCGGCATCGTCACCGCCTGCCTGCTCCTCGTGTCAGGCATCATGGTT
GGAATGGCCTGGTTTATGGGCGCCCGGTTCCCCATCGTGGACGATGTGTCTAGGTTTGCCCGGACCCTGTTTTCG
ACACAACAATCCGAGTCCGGCGTACGCGACGAGCTCTGA
Gene >Hirsu2|5871
ATGGGCGCTCTCTACTATCTCATGCACCCGAACCAGTTGCGGTCCATTATCCAATGGTGAGCACCAGCATCGCGT
CTGATTTTGCCTCTTGACTGTGCCGCCGCTGATCCGTGGGCGCAGGAAGCTCTGGCACAACCCCGTACACACGCG
CGACTCGTCGTCCGAATCGGAAACGCTCAAAGAATGCTTCCGCTTTCTGAACCTGACGAGTCGCAGCTTTGCGGC
CGTCATTCAAGAACTCGACCACGAGCTTCTCGTGCCCGTGACCCTCTTCTATCTTGTCCTGCGCGGCCTCGACAC
CATCGAAGACGACATGACCATACCCATTGAGAAAAAAGTGCCTCTGCTGCAGAATTTTCACAAGACGATGGAGAC
TGATGGCTGGCAATTTCACGAAAGCCAAGAGAAGGATCGGGAGCTGCTAGAAAAATTTGATGTTGTTGTTACCGA
GCTCAAGCAGATCAAGAAGCCCTACTCCGACATCATCAACGACATCGCCTGCAAGATGGGCAACGGCATGGCCGA
CTACGCGCAGGACACCAAGATGATCAAGGAGGGCGTGCAAACGATCGAAGAGTACGAGCTGTACTGCCACTACGT
CGCCGGCTTAGTCGGCGAGGGCCTGACCCGACTCTTCGTCGAGTCCAGCCTCGGCAACCCCAAGCTCCTGGAGCG
GCCGTCGTTGACAGAGTCCATGGGCCAGTTCCTGCAGAAGACAAACATTATCCGCGACATTCACGAAGACTGGCA
GGACGGCAGGCGCTGGTACCCCAAGGAGATCTGGAGCAAGCATGTGGACAGGTGGGAGGACATGCTCGACCCAAA
GCATCGCGACAAGGCCGTCAACTGCGTCTCGGAAATGGTGCTCGACGCACTGAAGCATGCCGAGGAGTGCCTCTT
CTACATGGCTGGCATGCGGGAGCAGAGCGTCTTCAACTTTGTCGCCATCCCCCAGACCATGGCCATCGCCACTCT
CGAGCTCGTCTTCCGGAATCCGGCCGTGCTGGAGAGAAACGTCAAGATCACAAAGGGCGACGCCTGCCAGATCAT
GTTCGAGTCGACCCAAAACCTGCACACCGTCTGCGAGGTGTTCCGGAGATACGCGCGACGGATACACGCCAAGAA
CGACCCTCGCGACCCCAATTTCCTGGCCATCAGCGTGCGCTGTGCCAAGGTATGCACCGTCTCGACGCGTGGCAG
ACGGACAAGCTGACGACGATGCGTGACAGATCGAGCAGTTCATCGAAACGCTCTTCCCGCGGCAGGACCCCAAGC
AACTGAGCATGGAGAACGCCGAGATGCAGAAGAAAGAGCCGGCGATGGATTCGGGCGAGACGTTGGTCCTGTTCG
GCATCGTCACCGCCTGCCTGCTCCTCGTGTCAGGCATCATGGTGAGCAAACCTCGACCGACCAGGGCGGCATGTG
CTCGATGCTGACGCACGGAAACCCGTGTCAGGTTGGAATGGCCTGGTTTATGGGCGCCCGGTTCCCCATCGTGGA
CGATGTGTCTAGGTTTGCCCGGACCCTGTTTTCGACACAACAATCCGAGTCCGGCGTACGCGACGAGCTCTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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