Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5822
Gene name
LocationContig_294:19472..20333
Strand-
Gene length (bp)861
Transcript length (bp)861
Coding sequence length (bp)861
Protein length (aa) 287

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01494 FAD_binding_3 FAD binding domain 3.4E-05 125 162

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q88FY2|6HN3M_PSEPK 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas putida (strain KT2440) GN=nicC PE=1 SV=1 55 194 3.0E-11
sp|P86491|6HN3M_PSEFL 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas fluorescens PE=1 SV=1 90 194 5.0E-10

GO

GO Term Description Terminal node
GO:0071949 FAD binding Yes
GO:0036094 small molecule binding No
GO:1901265 nucleoside phosphate binding No
GO:0043168 anion binding No
GO:0000166 nucleotide binding No
GO:0050660 flavin adenine dinucleotide binding No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5822
MTVYRTAFPAKLAMADELVRQRWEGRHTYEFWMGSGMHVGLYLSPELAALGITPRDEFLDPGKVARESWDPDVDP
DEVVGVLRRAKVSGSDWHPVIEALVRTAPRGGIVHWPLRWRDLSRRWVSRAGRVVQVGDAAHSTVPSSAAGGTLA
LEDAITLAACLGRGGLDSVPLASRVYNLLRYERASCTQKMAFVNAQVLGATTDWDAVRRDPERVRLRYPRWFFRH
DPEAYVDEKYEDAASHLATGADFRNTNIPPGHKFVHWTIEEIHRKMAAGAKVEDLLDGDWT*
Coding >Hirsu2|5822
ATGACGGTGTACCGCACTGCCTTTCCAGCCAAGCTGGCCATGGCGGACGAGCTGGTGCGCCAGCGGTGGGAGGGC
CGGCACACGTATGAGTTCTGGATGGGCTCCGGCATGCACGTCGGGCTGTACCTGTCGCCGGAGCTGGCCGCGCTG
GGCATCACGCCGCGCGACGAGTTCCTGGACCCGGGCAAGGTGGCGCGCGAGTCGTGGGACCCGGACGTTGACCCG
GACGAGGTCGTCGGCGTGCTGCGCCGGGCCAAGGTATCCGGCTCGGACTGGCACCCGGTCATCGAGGCGCTCGTC
CGCACGGCGCCTCGGGGCGGCATTGTCCACTGGCCGCTGCGATGGCGGGACCTGAGCCGCCGCTGGGTCTCGCGG
GCCGGCCGCGTAGTCCAGGTCGGCGACGCCGCTCACTCGACGGTGCCGTCGTCGGCCGCGGGCGGCACTCTGGCG
CTGGAGGACGCCATCACGCTGGCAGCGTGCCTCGGCCGCGGAGGCCTCGACTCCGTGCCGCTGGCCAGCCGCGTC
TACAACCTGCTGCGCTACGAGCGCGCAAGCTGCACGCAGAAGATGGCTTTCGTCAACGCCCAGGTGCTGGGCGCC
ACCACCGACTGGGACGCCGTTCGCAGGGACCCCGAGAGGGTGCGGCTGCGGTACCCGCGCTGGTTCTTCCGCCAC
GATCCGGAGGCCTATGTCGACGAGAAGTACGAAGACGCCGCCTCCCACCTGGCCACCGGGGCCGATTTCCGCAAC
ACGAACATTCCCCCCGGCCACAAGTTTGTCCACTGGACCATCGAGGAGATTCACAGGAAGATGGCGGCGGGGGCG
AAGGTCGAGGATCTGCTTGACGGAGACTGGACCTGA
Transcript >Hirsu2|5822
ATGACGGTGTACCGCACTGCCTTTCCAGCCAAGCTGGCCATGGCGGACGAGCTGGTGCGCCAGCGGTGGGAGGGC
CGGCACACGTATGAGTTCTGGATGGGCTCCGGCATGCACGTCGGGCTGTACCTGTCGCCGGAGCTGGCCGCGCTG
GGCATCACGCCGCGCGACGAGTTCCTGGACCCGGGCAAGGTGGCGCGCGAGTCGTGGGACCCGGACGTTGACCCG
GACGAGGTCGTCGGCGTGCTGCGCCGGGCCAAGGTATCCGGCTCGGACTGGCACCCGGTCATCGAGGCGCTCGTC
CGCACGGCGCCTCGGGGCGGCATTGTCCACTGGCCGCTGCGATGGCGGGACCTGAGCCGCCGCTGGGTCTCGCGG
GCCGGCCGCGTAGTCCAGGTCGGCGACGCCGCTCACTCGACGGTGCCGTCGTCGGCCGCGGGCGGCACTCTGGCG
CTGGAGGACGCCATCACGCTGGCAGCGTGCCTCGGCCGCGGAGGCCTCGACTCCGTGCCGCTGGCCAGCCGCGTC
TACAACCTGCTGCGCTACGAGCGCGCAAGCTGCACGCAGAAGATGGCTTTCGTCAACGCCCAGGTGCTGGGCGCC
ACCACCGACTGGGACGCCGTTCGCAGGGACCCCGAGAGGGTGCGGCTGCGGTACCCGCGCTGGTTCTTCCGCCAC
GATCCGGAGGCCTATGTCGACGAGAAGTACGAAGACGCCGCCTCCCACCTGGCCACCGGGGCCGATTTCCGCAAC
ACGAACATTCCCCCCGGCCACAAGTTTGTCCACTGGACCATCGAGGAGATTCACAGGAAGATGGCGGCGGGGGCG
AAGGTCGAGGATCTGCTTGACGGAGACTGGACCTGA
Gene >Hirsu2|5822
ATGACGGTGTACCGCACTGCCTTTCCAGCCAAGCTGGCCATGGCGGACGAGCTGGTGCGCCAGCGGTGGGAGGGC
CGGCACACGTATGAGTTCTGGATGGGCTCCGGCATGCACGTCGGGCTGTACCTGTCGCCGGAGCTGGCCGCGCTG
GGCATCACGCCGCGCGACGAGTTCCTGGACCCGGGCAAGGTGGCGCGCGAGTCGTGGGACCCGGACGTTGACCCG
GACGAGGTCGTCGGCGTGCTGCGCCGGGCCAAGGTATCCGGCTCGGACTGGCACCCGGTCATCGAGGCGCTCGTC
CGCACGGCGCCTCGGGGCGGCATTGTCCACTGGCCGCTGCGATGGCGGGACCTGAGCCGCCGCTGGGTCTCGCGG
GCCGGCCGCGTAGTCCAGGTCGGCGACGCCGCTCACTCGACGGTGCCGTCGTCGGCCGCGGGCGGCACTCTGGCG
CTGGAGGACGCCATCACGCTGGCAGCGTGCCTCGGCCGCGGAGGCCTCGACTCCGTGCCGCTGGCCAGCCGCGTC
TACAACCTGCTGCGCTACGAGCGCGCAAGCTGCACGCAGAAGATGGCTTTCGTCAACGCCCAGGTGCTGGGCGCC
ACCACCGACTGGGACGCCGTTCGCAGGGACCCCGAGAGGGTGCGGCTGCGGTACCCGCGCTGGTTCTTCCGCCAC
GATCCGGAGGCCTATGTCGACGAGAAGTACGAAGACGCCGCCTCCCACCTGGCCACCGGGGCCGATTTCCGCAAC
ACGAACATTCCCCCCGGCCACAAGTTTGTCCACTGGACCATCGAGGAGATTCACAGGAAGATGGCGGCGGGGGCG
AAGGTCGAGGATCTGCTTGACGGAGACTGGACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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