Protein ID | Hirsu2|5791 |
Gene name | |
Location | Contig_292:18217..18850 |
Strand | - |
Gene length (bp) | 633 |
Transcript length (bp) | 489 |
Coding sequence length (bp) | 489 |
Protein length (aa) | 163 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.2027 | 0.1689 | 0.1973 | 0.6583 | 0.1395 | 0.0167 | 0.2786 | 0.8124 | 0.4136 | 0.0145 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 20 | 42 | 22 |
2 | 47 | 69 | 22 |
3 | 89 | 111 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 9974 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Ophiocordyceps subramaniannii | Hirsu2|5791 (this protein) |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5791 MTSSSQRAPGREHIPDFPSGWIILRYVQFLFCLLSIAFVGYSSAAILLLGPFVALITSTLSFIVSIWLIVAHWFV PKIYNYWAVLTLDIFLWLCWCVSSFFCIMYLMHVLYNRYVSCERPMDGVDPQSRWMGFSKQDCIDGQVSVGFLAL LTTITGLSSCQM* |
Coding | >Hirsu2|5791 ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC CCCTTTGTGGCCCTCATCACGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTC CCCAAGATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTC TTCTGCATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGAT CCGCAGAGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTA CTCACCACCATCACCGGCCTTTCCAGCTGCCAGATGTGA |
Transcript | >Hirsu2|5791 ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC CCCTTTGTGGCCCTCATCACGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTC CCCAAGATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTC TTCTGCATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGAT CCGCAGAGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTA CTCACCACCATCACCGGCCTTTCCAGCTGCCAGATGTGA |
Gene | >Hirsu2|5791 ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC CCCTTTGTGGCCCTCATCACGGTACGACGTGCTCTTCTCCTTGCCGACTCTTGATTTTGCCAGCTCTTCGGCCGG ATTGACGCTGTTGCCTCCTCTCATCTCGACCACGGCACGTTTTTTTTTCAAAGACATGCTGACGGTGTCGGGTCG CGGAGTGAGAAACAGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTCCCCAAG ATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTCTTCTGC ATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGATCCGCAG AGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTACTCACC ACCATCACCGGCCTTTCCAGCTGCCAGATGTGA |