Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5791
Gene name
LocationContig_292:18217..18850
Strand-
Gene length (bp)633
Transcript length (bp)489
Coding sequence length (bp)489
Protein length (aa) 163

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane|Lysosome/Vacuole Signal peptide|Transmembrane domain 0.2027 0.1689 0.1973 0.6583 0.1395 0.0167 0.2786 0.8124 0.4136 0.0145

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 20 42 22
2 47 69 22
3 89 111 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9974
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|5791 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5791
MTSSSQRAPGREHIPDFPSGWIILRYVQFLFCLLSIAFVGYSSAAILLLGPFVALITSTLSFIVSIWLIVAHWFV
PKIYNYWAVLTLDIFLWLCWCVSSFFCIMYLMHVLYNRYVSCERPMDGVDPQSRWMGFSKQDCIDGQVSVGFLAL
LTTITGLSSCQM*
Coding >Hirsu2|5791
ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC
TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC
CCCTTTGTGGCCCTCATCACGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTC
CCCAAGATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTC
TTCTGCATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGAT
CCGCAGAGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTA
CTCACCACCATCACCGGCCTTTCCAGCTGCCAGATGTGA
Transcript >Hirsu2|5791
ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC
TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC
CCCTTTGTGGCCCTCATCACGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTC
CCCAAGATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTC
TTCTGCATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGAT
CCGCAGAGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTA
CTCACCACCATCACCGGCCTTTCCAGCTGCCAGATGTGA
Gene >Hirsu2|5791
ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC
TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC
CCCTTTGTGGCCCTCATCACGGTACGACGTGCTCTTCTCCTTGCCGACTCTTGATTTTGCCAGCTCTTCGGCCGG
ATTGACGCTGTTGCCTCCTCTCATCTCGACCACGGCACGTTTTTTTTTCAAAGACATGCTGACGGTGTCGGGTCG
CGGAGTGAGAAACAGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTCCCCAAG
ATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTCTTCTGC
ATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGATCCGCAG
AGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTACTCACC
ACCATCACCGGCCTTTCCAGCTGCCAGATGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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