© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5791 |
| Gene name | |
| Location | Contig_292:18217..18850 |
| Strand | - |
| Gene length (bp) | 633 |
| Transcript length (bp) | 489 |
| Coding sequence length (bp) | 489 |
| Protein length (aa) | 163 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.2027 | 0.1689 | 0.1973 | 0.6583 | 0.1395 | 0.0167 | 0.2786 | 0.8124 | 0.4136 | 0.0145 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 47 | 69 | 22 |
| 3 | 89 | 111 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 9974 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|5791 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5791 MTSSSQRAPGREHIPDFPSGWIILRYVQFLFCLLSIAFVGYSSAAILLLGPFVALITSTLSFIVSIWLIVAHWFV PKIYNYWAVLTLDIFLWLCWCVSSFFCIMYLMHVLYNRYVSCERPMDGVDPQSRWMGFSKQDCIDGQVSVGFLAL LTTITGLSSCQM* |
| Coding | >Hirsu2|5791 ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC CCCTTTGTGGCCCTCATCACGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTC CCCAAGATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTC TTCTGCATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGAT CCGCAGAGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTA CTCACCACCATCACCGGCCTTTCCAGCTGCCAGATGTGA |
| Transcript | >Hirsu2|5791 ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC CCCTTTGTGGCCCTCATCACGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTC CCCAAGATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTC TTCTGCATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGAT CCGCAGAGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTA CTCACCACCATCACCGGCCTTTCCAGCTGCCAGATGTGA |
| Gene | >Hirsu2|5791 ATGACATCATCTTCGCAGCGCGCCCCCGGGCGCGAGCACATCCCCGATTTCCCGTCCGGCTGGATTATCCTGCGC TACGTGCAGTTCCTCTTCTGCCTCCTCTCCATCGCCTTTGTCGGCTATTCCTCCGCCGCCATCCTTCTCCTGGGC CCCTTTGTGGCCCTCATCACGGTACGACGTGCTCTTCTCCTTGCCGACTCTTGATTTTGCCAGCTCTTCGGCCGG ATTGACGCTGTTGCCTCCTCTCATCTCGACCACGGCACGTTTTTTTTTCAAAGACATGCTGACGGTGTCGGGTCG CGGAGTGAGAAACAGTCCACTTTGTCCTTCATCGTCTCCATCTGGCTCATCGTCGCCCACTGGTTCGTCCCCAAG ATCTACAATTACTGGGCCGTTCTCACCCTCGACATCTTTCTCTGGCTCTGCTGGTGTGTCTCGTCCTTCTTCTGC ATAATGTACCTCATGCATGTCCTCTACAATCGCTACGTCTCCTGCGAGCGCCCCATGGACGGCGTCGATCCGCAG AGCCGCTGGATGGGCTTCTCCAAGCAAGATTGCATCGACGGCCAGGTCAGCGTCGGCTTTCTCGCCCTACTCACC ACCATCACCGGCCTTTCCAGCTGCCAGATGTGA |