© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5787 |
| Gene name | |
| Location | Contig_292:3907..5785 |
| Strand | - |
| Gene length (bp) | 1878 |
| Transcript length (bp) | 1821 |
| Coding sequence length (bp) | 1821 |
| Protein length (aa) | 607 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12929 | Mid1 | Stretch-activated Ca2+-permeable channel component | 9.4E-141 | 127 | 574 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10063|EHS1_SCHPO | Calcium influx-promoting protein ehs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ehs1 PE=3 SV=1 | 210 | 585 | 2.0E-54 |
| sp|P41821|MID1_YEAST | Stretch-activated cation channel MID1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MID1 PE=1 SV=1 | 201 | 575 | 1.0E-39 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005262 | calcium channel activity | Yes |
| GO:0098703 | calcium ion import across plasma membrane | Yes |
| GO:0030001 | metal ion transport | No |
| GO:0098657 | import into cell | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0097553 | calcium ion transmembrane import into cytosol | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0099587 | inorganic ion import across plasma membrane | No |
| GO:0009987 | cellular process | No |
| GO:0070588 | calcium ion transmembrane transport | No |
| GO:0015085 | calcium ion transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0015267 | channel activity | No |
| GO:0005216 | ion channel activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0005261 | cation channel activity | No |
| GO:0098739 | import across plasma membrane | No |
| GO:0055085 | transmembrane transport | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0098659 | inorganic cation import across plasma membrane | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006812 | cation transport | No |
| GO:0006816 | calcium ion transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | 0.1729 | 0.077 | 0.5931 | 0.4851 | 0.1234 | 0.0162 | 0.3553 | 0.3105 | 0.3068 | 0.0055 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 31 | 0.999699 |
| Orthofinder run ID | 4 |
| Orthogroup | 3212 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5787 MLSSPQPSRLGALLVLLALDLLLFLPSVAQAADALLASNGPPSVPYELVDPQPELTYNPKFALFDRSIIGRAPPG VTALTKNEPMALNLQPGSTACFMVERSLLLGNDGDSAANRPSQNAQASPKSLYLSANTCLQPAHKASDSKILTPP QLVLSVSNSSQVACQQQTLEPKESQGRVFTEGAVVYGLNATGDVFIGVTAPNVSTDFAGVYNFELAASVDGYFHR YENRTGAQVLWMDSDSTSALLVTRNLTENKGDVQRIMDQDPPFGLFIIRKDAPTSAGLMHSVCGLRNTALIQGNH LSNSLLNSPMTTAMTLRGPGGFPKQQFHLVGLNASTPYIGVPVRESSNSGLGKRQAGNVGAGSVVFSATEFQTVS GTNCKMVTDLKFCDEIQYAVPGNDNKFNNTALARAYDDYARKVYDNFDKAMMQIPCETPSTSRYSLTRTCDDCKA AYKKWLCTIVMPRCEDFRSGNEFAMVRNVWQPFPNGTRLPDEEKNRLGQRPWMNASRTRFVDDEIEPGPYKEILP CEDICYEVVQSCPANLQFTCPQPGMLSFNHSYGQRDVNGSTVSCNYPGEARTRMSGAAALLPDLIRLGAISLFAT AVLTVR* |
| Coding | >Hirsu2|5787 ATGCTCTCGAGTCCCCAGCCTTCGCGGCTGGGGGCGCTTCTGGTGCTTCTTGCTCTCGATCTGCTCCTCTTCTTG CCGAGCGTCGCCCAGGCCGCTGATGCGCTCCTCGCCTCGAACGGCCCGCCGTCCGTGCCCTACGAGCTGGTCGAT CCCCAGCCCGAACTGACATACAATCCGAAATTCGCCCTTTTCGACCGGAGTATCATAGGGCGAGCACCGCCTGGC GTGACGGCTCTCACCAAGAACGAGCCCATGGCTCTGAATTTGCAACCTGGCTCAACAGCTTGCTTCATGGTCGAA AGAAGTCTACTGCTTGGAAATGACGGCGACAGTGCAGCCAATCGGCCATCACAGAATGCGCAGGCGTCTCCCAAG AGCCTCTACCTGTCCGCCAACACTTGTCTGCAGCCGGCACACAAAGCTTCGGACAGCAAGATATTGACGCCTCCA CAACTTGTACTTTCCGTTTCCAATTCGAGCCAGGTCGCTTGTCAGCAGCAAACGTTGGAGCCCAAAGAGAGTCAG GGCAGGGTCTTCACCGAGGGCGCTGTCGTGTACGGCCTCAACGCCACCGGAGACGTGTTCATCGGCGTCACGGCC CCAAATGTGTCAACAGACTTCGCGGGGGTGTATAACTTTGAGCTGGCGGCGTCCGTTGATGGCTACTTTCACCGG TACGAAAATCGCACCGGCGCCCAGGTCTTGTGGATGGATAGCGACTCGACGTCCGCCTTACTTGTCACCAGAAAC CTGACGGAGAACAAGGGGGACGTCCAGCGCATCATGGATCAAGATCCCCCCTTTGGGCTCTTCATCATTAGAAAA GACGCGCCGACCAGTGCTGGCTTGATGCACTCAGTCTGCGGACTGCGGAACACGGCCCTGATCCAAGGGAATCAC CTCAGCAACAGCTTGTTGAATAGCCCCATGACGACGGCCATGACGCTTCGGGGGCCGGGGGGTTTCCCAAAGCAG CAGTTCCACCTCGTCGGGCTCAATGCAAGCACTCCCTATATAGGCGTCCCGGTCAGGGAATCGAGCAACAGCGGC CTCGGGAAAAGGCAGGCCGGCAATGTCGGGGCAGGGAGCGTCGTCTTCTCGGCCACAGAATTCCAGACAGTATCA GGGACAAACTGCAAAATGGTAACGGACCTGAAGTTTTGCGACGAGATACAGTACGCGGTACCGGGGAACGACAAC AAATTTAATAACACGGCGCTGGCCAGGGCGTACGACGATTACGCGAGAAAAGTGTACGACAATTTTGACAAAGCC ATGATGCAGATCCCGTGCGAAACACCGAGCACGTCACGGTATTCACTGACGCGTACCTGCGACGACTGCAAGGCG GCATACAAGAAATGGCTGTGCACAATCGTCATGCCGCGGTGCGAGGATTTTCGGAGCGGCAACGAGTTTGCTATG GTACGCAACGTCTGGCAGCCCTTCCCCAATGGCACACGGCTTCCGGATGAGGAGAAGAACAGGCTGGGCCAGAGG CCATGGATGAACGCGTCGCGCACCCGCTTCGTCGACGATGAGATCGAACCTGGTCCGTACAAAGAAATCCTGCCA TGCGAGGACATATGCTACGAGGTGGTGCAGAGCTGCCCGGCCAATCTTCAGTTCACATGCCCGCAGCCAGGCATG TTGAGCTTCAATCACAGCTATGGACAGCGAGACGTCAACGGGTCGACGGTTTCGTGCAACTACCCTGGTGAAGCG CGGACGCGCATGAGCGGCGCCGCGGCACTGCTGCCAGACCTGATACGACTTGGCGCTATTTCCTTGTTCGCGACG GCTGTTCTGACGGTCAGGTGA |
| Transcript | >Hirsu2|5787 ATGCTCTCGAGTCCCCAGCCTTCGCGGCTGGGGGCGCTTCTGGTGCTTCTTGCTCTCGATCTGCTCCTCTTCTTG CCGAGCGTCGCCCAGGCCGCTGATGCGCTCCTCGCCTCGAACGGCCCGCCGTCCGTGCCCTACGAGCTGGTCGAT CCCCAGCCCGAACTGACATACAATCCGAAATTCGCCCTTTTCGACCGGAGTATCATAGGGCGAGCACCGCCTGGC GTGACGGCTCTCACCAAGAACGAGCCCATGGCTCTGAATTTGCAACCTGGCTCAACAGCTTGCTTCATGGTCGAA AGAAGTCTACTGCTTGGAAATGACGGCGACAGTGCAGCCAATCGGCCATCACAGAATGCGCAGGCGTCTCCCAAG AGCCTCTACCTGTCCGCCAACACTTGTCTGCAGCCGGCACACAAAGCTTCGGACAGCAAGATATTGACGCCTCCA CAACTTGTACTTTCCGTTTCCAATTCGAGCCAGGTCGCTTGTCAGCAGCAAACGTTGGAGCCCAAAGAGAGTCAG GGCAGGGTCTTCACCGAGGGCGCTGTCGTGTACGGCCTCAACGCCACCGGAGACGTGTTCATCGGCGTCACGGCC CCAAATGTGTCAACAGACTTCGCGGGGGTGTATAACTTTGAGCTGGCGGCGTCCGTTGATGGCTACTTTCACCGG TACGAAAATCGCACCGGCGCCCAGGTCTTGTGGATGGATAGCGACTCGACGTCCGCCTTACTTGTCACCAGAAAC CTGACGGAGAACAAGGGGGACGTCCAGCGCATCATGGATCAAGATCCCCCCTTTGGGCTCTTCATCATTAGAAAA GACGCGCCGACCAGTGCTGGCTTGATGCACTCAGTCTGCGGACTGCGGAACACGGCCCTGATCCAAGGGAATCAC CTCAGCAACAGCTTGTTGAATAGCCCCATGACGACGGCCATGACGCTTCGGGGGCCGGGGGGTTTCCCAAAGCAG CAGTTCCACCTCGTCGGGCTCAATGCAAGCACTCCCTATATAGGCGTCCCGGTCAGGGAATCGAGCAACAGCGGC CTCGGGAAAAGGCAGGCCGGCAATGTCGGGGCAGGGAGCGTCGTCTTCTCGGCCACAGAATTCCAGACAGTATCA GGGACAAACTGCAAAATGGTAACGGACCTGAAGTTTTGCGACGAGATACAGTACGCGGTACCGGGGAACGACAAC AAATTTAATAACACGGCGCTGGCCAGGGCGTACGACGATTACGCGAGAAAAGTGTACGACAATTTTGACAAAGCC ATGATGCAGATCCCGTGCGAAACACCGAGCACGTCACGGTATTCACTGACGCGTACCTGCGACGACTGCAAGGCG GCATACAAGAAATGGCTGTGCACAATCGTCATGCCGCGGTGCGAGGATTTTCGGAGCGGCAACGAGTTTGCTATG GTACGCAACGTCTGGCAGCCCTTCCCCAATGGCACACGGCTTCCGGATGAGGAGAAGAACAGGCTGGGCCAGAGG CCATGGATGAACGCGTCGCGCACCCGCTTCGTCGACGATGAGATCGAACCTGGTCCGTACAAAGAAATCCTGCCA TGCGAGGACATATGCTACGAGGTGGTGCAGAGCTGCCCGGCCAATCTTCAGTTCACATGCCCGCAGCCAGGCATG TTGAGCTTCAATCACAGCTATGGACAGCGAGACGTCAACGGGTCGACGGTTTCGTGCAACTACCCTGGTGAAGCG CGGACGCGCATGAGCGGCGCCGCGGCACTGCTGCCAGACCTGATACGACTTGGCGCTATTTCCTTGTTCGCGACG GCTGTTCTGACGGTCAGGTGA |
| Gene | >Hirsu2|5787 ATGCTCTCGAGTCCCCAGCCTTCGCGGCTGGGGGCGCTTCTGGTGCTTCTTGCTCTCGATCTGCTCCTCTTCTTG CCGAGCGTCGCCCAGGCCGCTGATGCGCTCCTCGCCTCGAACGGCCCGCCGTCCGTGCCCTACGAGCTGGTCGAT CCCCAGCCCGAACTGACATACAATCCGAAATTCGCCCTTTTCGACCGGAGTATCATAGGGCGAGCACCGCCTGGC GTGACGGCTCTCACCAAGAACGAGCCCATGGCTCTGAATTTGCAACCTGGCTCAACAGCTTGCTTCATGGTCGAA AGAAGTCTACTGCTTGGAAATGACGGCGACAGTGCAGCCAATCGGCCATCACAGAATGCGCAGGCGTCTCCCAAG AGCCTCTACCTGTCCGCCAACACTTGTCTGCAGCCGGCACACAAAGCTTCGGACAGCAAGATATTGACGCCTCCA CAACTTGTACTTTCCGTTTCCAATTCGAGCCAGGTCGCTTGTCAGCAGCAAACGTTGGAGCCCAAAGAGAGTCAG GGCAGGGTCTTCACCGAGGGCGCTGTCGTGTACGGCCTCAACGCCACCGGAGACGTGTTCATCGGCGTCACGGCC CCAAATGTGTCAACAGACTTCGCGGGGGTGTATAACTTTGAGCTGGCGGCGTCCGTTGATGGCTACTTTCACCGG TACGAAAATCGCACCGGCGCCCAGGTCTTGTGGATGGATAGCGACTCGACGTCCGCCTTACTTGTCACCAGAAAC CTGACGGAGAACAAGGGGGACGTCCAGCGCATCATGGATCAAGATCCCCCCTTTGGGCTCTTCATCATTAGAAAA GACGCGCCGACCAGTGCTGGCTTGATGCACTCAGTCTGCGGACTGCGGAACACGGCCCTGATCCAAGGGAATCAC CTCAGCAACAGCTTGTTGAATAGCCCCATGACGACGGCCATGACGCTTCGGGGGCCGGGGGGTTTCCCAAAGCAG CAGTTCCACCTCGTCGGGCTCAATGCAAGCACTCCCTATATAGGCGTCCCGGTCAGGGAATCGAGCAACAGCGGC CTCGGGAAAAGGCAGGCCGGCAATGTCGGGGCAGGGAGCGTCGTCTTCTCGGCCACAGAATTCCAGACAGTATCA GGTAGGCGATAGCCTGGGGCAGAGGGGGCCGAACAATGGCGCTGACACGGCGGCTCAGGGACAAACTGCAAAATG GTAACGGACCTGAAGTTTTGCGACGAGATACAGTACGCGGTACCGGGGAACGACAACAAATTTAATAACACGGCG CTGGCCAGGGCGTACGACGATTACGCGAGAAAAGTGTACGACAATTTTGACAAAGCCATGATGCAGATCCCGTGC GAAACACCGAGCACGTCACGGTATTCACTGACGCGTACCTGCGACGACTGCAAGGCGGCATACAAGAAATGGCTG TGCACAATCGTCATGCCGCGGTGCGAGGATTTTCGGAGCGGCAACGAGTTTGCTATGGTACGCAACGTCTGGCAG CCCTTCCCCAATGGCACACGGCTTCCGGATGAGGAGAAGAACAGGCTGGGCCAGAGGCCATGGATGAACGCGTCG CGCACCCGCTTCGTCGACGATGAGATCGAACCTGGTCCGTACAAAGAAATCCTGCCATGCGAGGACATATGCTAC GAGGTGGTGCAGAGCTGCCCGGCCAATCTTCAGTTCACATGCCCGCAGCCAGGCATGTTGAGCTTCAATCACAGC TATGGACAGCGAGACGTCAACGGGTCGACGGTTTCGTGCAACTACCCTGGTGAAGCGCGGACGCGCATGAGCGGC GCCGCGGCACTGCTGCCAGACCTGATACGACTTGGCGCTATTTCCTTGTTCGCGACGGCTGTTCTGACGGTCAGG TGA |