© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|5733 |
| Gene name | |
| Location | Contig_289:1672..2871 |
| Strand | - |
| Gene length (bp) | 1199 |
| Transcript length (bp) | 1035 |
| Coding sequence length (bp) | 1035 |
| Protein length (aa) | 345 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02157 | Man-6-P_recep | Mannose-6-phosphate receptor | 5.3E-13 | 185 | 295 |
| PF09451 | ATG27 | Autophagy-related protein 27 | 2.0E-11 | 183 | 299 |
| PF00878 | CIMR | Cation-independent mannose-6-phosphate receptor repeat | 4.3E-05 | 189 | 237 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59745|YN29_SCHPO | Putative mannose 6-phosphate receptor-like protein C530.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.09c PE=3 SV=1 | 31 | 296 | 2.0E-35 |
| sp|Q75BD5|MRL1_ASHGO | Mannose 6-phosphate receptor-like protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRL1 PE=3 SV=1 | 31 | 339 | 1.0E-11 |
| sp|P24668|MPRD_MOUSE | Cation-dependent mannose-6-phosphate receptor OS=Mus musculus GN=M6pr PE=1 SV=1 | 219 | 295 | 8.0E-08 |
| sp|Q6AY20|MPRD_RAT | Cation-dependent mannose-6-phosphate receptor OS=Rattus norvegicus GN=M6pr PE=1 SV=1 | 219 | 295 | 9.0E-08 |
| sp|P11456|MPRD_BOVIN | Cation-dependent mannose-6-phosphate receptor OS=Bos taurus GN=M6PR PE=1 SV=1 | 219 | 295 | 1.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59745|YN29_SCHPO | Putative mannose 6-phosphate receptor-like protein C530.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.09c PE=3 SV=1 | 31 | 296 | 2.0E-35 |
| sp|Q75BD5|MRL1_ASHGO | Mannose 6-phosphate receptor-like protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRL1 PE=3 SV=1 | 31 | 339 | 1.0E-11 |
| sp|P24668|MPRD_MOUSE | Cation-dependent mannose-6-phosphate receptor OS=Mus musculus GN=M6pr PE=1 SV=1 | 219 | 295 | 8.0E-08 |
| sp|Q6AY20|MPRD_RAT | Cation-dependent mannose-6-phosphate receptor OS=Rattus norvegicus GN=M6pr PE=1 SV=1 | 219 | 295 | 9.0E-08 |
| sp|P11456|MPRD_BOVIN | Cation-dependent mannose-6-phosphate receptor OS=Bos taurus GN=M6PR PE=1 SV=1 | 219 | 295 | 1.0E-07 |
| sp|P20645|MPRD_HUMAN | Cation-dependent mannose-6-phosphate receptor OS=Homo sapiens GN=M6PR PE=1 SV=1 | 219 | 295 | 7.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0007041 | lysosomal transport | Yes |
| GO:0038023 | signaling receptor activity | Yes |
| GO:0005537 | mannose binding | Yes |
| GO:0048029 | monosaccharide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0030246 | carbohydrate binding | No |
| GO:0046907 | intracellular transport | No |
| GO:0051179 | localization | No |
| GO:0036094 | small molecule binding | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:0051641 | cellular localization | No |
| GO:0060089 | molecular transducer activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0007034 | vacuolar transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1352 | 0.117 | 0.1287 | 0.254 | 0.1764 | 0.0237 | 0.4512 | 0.5281 | 0.4753 | 0.018 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.985215 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 246 | 268 | 22 |
| 2 | 281 | 303 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3192 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5733 MRFPLAAALLAAGAVAGAADKDAPSSTTPVPACTATSSTGSGAFFDLRPDMAAVKEQSPKSAVSKDYRARGYDYG KNFTLNICGAVVDPVTDVVGLKKDLWANVSAYYMSHGNIYSIGSESMDLRSRGRKLVLQYGGGSPCGGKSSSKDR RAADDNQPRPRDGRSAPSSLSPRSQTVTARDDKEKATVKRKSTTISFLCDRDPGNTQASVSFVGTDPDECAYFFE ARSVHACAHAEPHKPGSVGPGSVFGLILLIAVLVYVLGGVFYNRTVTNARGWRQLPNYSLWAGIGGFISDVFFNA WAWCSRCLPSRRGYRYLNSNASSRHQNSDAENRLIDQLDEEWDD* |
| Coding | >Hirsu2|5733 ATGCGCTTCCCTCTCGCTGCGGCTCTACTCGCTGCCGGCGCAGTGGCCGGCGCAGCAGACAAAGATGCGCCGTCG TCAACAACGCCGGTGCCGGCATGCACTGCCACCTCGTCCACCGGCAGCGGTGCCTTTTTCGATCTGCGGCCGGAC ATGGCGGCCGTCAAGGAGCAATCGCCCAAGTCGGCCGTATCCAAAGACTACCGGGCCAGAGGGTACGACTACGGG AAAAACTTCACCTTGAACATCTGTGGGGCCGTCGTGGATCCCGTCACGGACGTCGTTGGCTTGAAGAAGGATCTG TGGGCCAACGTGAGCGCATACTACATGTCTCACGGGAACATTTATTCTATAGGGTCCGAGTCGATGGATCTACGC AGTCGTGGGCGAAAGCTTGTGCTGCAGTACGGAGGCGGCTCTCCCTGCGGCGGCAAGTCGTCGTCCAAGGACAGA CGGGCTGCCGATGACAATCAGCCTCGTCCTCGTGATGGCCGATCCGCGCCGTCTTCCCTGTCCCCGCGGTCCCAG ACCGTCACGGCCAGGGACGACAAGGAAAAGGCGACAGTCAAGCGAAAGTCGACGACGATTTCCTTCCTCTGCGAC CGCGACCCGGGCAACACGCAGGCCAGCGTGTCCTTCGTCGGCACCGACCCGGACGAATGCGCCTACTTCTTCGAG GCTCGCTCCGTCCACGCCTGCGCCCACGCGGAGCCGCACAAGCCGGGCAGCGTCGGCCCGGGCAGCGTGTTTGGA CTGATCCTGCTCATCGCCGTGCTCGTCTACGTGCTGGGGGGCGTCTTTTACAACCGCACGGTGACGAACGCTCGA GGCTGGCGGCAGCTGCCCAACTACAGCCTGTGGGCCGGCATCGGGGGCTTCATCAGCGACGTCTTCTTCAACGCC TGGGCTTGGTGCTCGCGCTGCCTGCCGAGCAGGCGAGGCTACCGCTACCTCAACTCCAACGCGAGCAGCCGACAC CAAAACTCGGACGCGGAGAACCGGCTGATAGATCAGCTGGACGAGGAATGGGACGACTAG |
| Transcript | >Hirsu2|5733 ATGCGCTTCCCTCTCGCTGCGGCTCTACTCGCTGCCGGCGCAGTGGCCGGCGCAGCAGACAAAGATGCGCCGTCG TCAACAACGCCGGTGCCGGCATGCACTGCCACCTCGTCCACCGGCAGCGGTGCCTTTTTCGATCTGCGGCCGGAC ATGGCGGCCGTCAAGGAGCAATCGCCCAAGTCGGCCGTATCCAAAGACTACCGGGCCAGAGGGTACGACTACGGG AAAAACTTCACCTTGAACATCTGTGGGGCCGTCGTGGATCCCGTCACGGACGTCGTTGGCTTGAAGAAGGATCTG TGGGCCAACGTGAGCGCATACTACATGTCTCACGGGAACATTTATTCTATAGGGTCCGAGTCGATGGATCTACGC AGTCGTGGGCGAAAGCTTGTGCTGCAGTACGGAGGCGGCTCTCCCTGCGGCGGCAAGTCGTCGTCCAAGGACAGA CGGGCTGCCGATGACAATCAGCCTCGTCCTCGTGATGGCCGATCCGCGCCGTCTTCCCTGTCCCCGCGGTCCCAG ACCGTCACGGCCAGGGACGACAAGGAAAAGGCGACAGTCAAGCGAAAGTCGACGACGATTTCCTTCCTCTGCGAC CGCGACCCGGGCAACACGCAGGCCAGCGTGTCCTTCGTCGGCACCGACCCGGACGAATGCGCCTACTTCTTCGAG GCTCGCTCCGTCCACGCCTGCGCCCACGCGGAGCCGCACAAGCCGGGCAGCGTCGGCCCGGGCAGCGTGTTTGGA CTGATCCTGCTCATCGCCGTGCTCGTCTACGTGCTGGGGGGCGTCTTTTACAACCGCACGGTGACGAACGCTCGA GGCTGGCGGCAGCTGCCCAACTACAGCCTGTGGGCCGGCATCGGGGGCTTCATCAGCGACGTCTTCTTCAACGCC TGGGCTTGGTGCTCGCGCTGCCTGCCGAGCAGGCGAGGCTACCGCTACCTCAACTCCAACGCGAGCAGCCGACAC CAAAACTCGGACGCGGAGAACCGGCTGATAGATCAGCTGGACGAGGAATGGGACGACTAG |
| Gene | >Hirsu2|5733 ATGCGCTTCCCTCTCGCTGCGGCTCTACTCGCTGCCGGCGCAGTGGCCGGCGCAGCAGACAAAGATGCGCCGTCG TCAACAACGCCGGTGCCGGCATGCACTGCCACCTCGTCCACCGGCAGCGGTGCCTTTTTCGATCTGCGGCCGGAC ATGGCGGCCGTCAAGGAGCAATCGCCCAAGTCGGCCGTATCCAAAGACTACCGGGCCAGAGGGTACGACTACGGG AAAAACTTCACCTTGAACATCTGTGGGGCCGTCGTGGATCCCGTCACGGACGTCGTTGGCTTGAAGAAGGATCTG TGGGCCAACGTGAGCGCATACTACATGTCTCACGGGAACATTTATTCTATAGGGTGAGGATGGCCCCGTTGTCGA CAGCTCGTCGCCGCCCTCGTTCATTCTGCAGATGCGCGCGTCAGACACTGACGTTACCGAAATCCAGGTCCGAGT CGATGGATCTACGCAGTCGTGGGCGAAAGCTTGTGCTGCAGTACGGAGGCGGCTCTCCCTGCGGCGGCAAGTCGT CGTCCAAGGACAGACGGGCTGCCGATGACAATCAGCCTCGTCCTCGTGATGGCCGATCCGCGCCGTCTTCCCTGT CCCCGCGGTCCCAGACCGTCACGGCCAGGGACGACAAGGAAAAGGCGACAGTCAAGCGAAAGTCGACGACGATTT CCTTCCTCTGCGACCGCGACCCGGGCAACACGCAGGCCAGCGTGTCCTTCGTCGGCACCGACCCGGACGAATGCG CCTACTTCTTCGAGGCTCGCTCCGTCCACGCCTGCGCCCACGCGGAGCCGCACAAGCCGGGCAGCGTCGGCCCGG GCAGCGTGTTTGGACTGATCCTGCTCATCGCCGTGCTCGTCTACGTGCTGGGGGGCGTCTTTTACAACCGCACGG TGACGAACGCTCGAGGCTGGCGGCAGCTGCCCAACTACAGCCTGTGGGCCGGCATCGGGGGCTTCATCAGCGTGC GTCCCTCTCGTCTCAAGGCGGATCTGCCTCTCCACCGACGTGCGGGCTGACCCGTTTGCTTTGGCGCGTAGGACG TCTTCTTCAACGCCTGGGCTTGGTGCTCGCGCTGCCTGCCGAGCAGGCGAGGCTACCGCTACCTCAACTCCAACG CGAGCAGCCGACACCAAAACTCGGACGCGGAGAACCGGCTGATAGATCAGCTGGACGAGGAATGGGACGACTAG |