© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5676 |
| Gene name | |
| Location | Contig_285:23873..25426 |
| Strand | + |
| Gene length (bp) | 1553 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1437 |
| Protein length (aa) | 479 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05637 | Glyco_transf_34 | galactosyl transferase GMA12/MNN10 family | 5.5E-06 | 167 | 285 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9LZJ3|XXT1_ARATH | Xyloglucan 6-xylosyltransferase 1 OS=Arabidopsis thaliana GN=XXT1 PE=1 SV=1 | 155 | 284 | 7.0E-08 |
| sp|O22775|XXT2_ARATH | Xyloglucan 6-xylosyltransferase 2 OS=Arabidopsis thaliana GN=XXT2 PE=1 SV=1 | 155 | 284 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5676 MVFSGSVRSTRGTILLVGAVIFLTIFWGLFATSSDSWDLSSSHRTKFAFSHAPSAVPAKSVSPRPSPHAKPDHPG DINVVQYASQLRKFFFEQLWRPSVEPTALHYRPFGAYNWKLPRPPQWNRPLGNDLCIIDLDTRPFDRPGQIFGPE FMTWDNPLGVHGLSLGILNHWLYAKIHGYKYYYVAVSEPADRRSSWKKPPIMAKILKEHDVCLYLDSDAIFPRLD LPFEWLLNYWQLFPGINSLALAVDPDLEPNKDRFGKLFLNTGFIVAQNNPKTYEILDAWQKCPDEGHPYPGCVEF RYNEPGRPTDQGGFGTFVRYNFSDAIKELPCTEANGFPQNDWGCKGQFIRHLWTGKADQIKVDVGEQLPGPYLQL FHQQFRDEQDEFYLTESALMSKGPKAAAKTAQFTKGAQGGGWHAPQHGAEAGNQPPTGSHREAGQEPRTGSEPKT EQSAESRPPEHEPVPGSSEEDPINEENA* |
| Coding | >Hirsu2|5676 ATGGTCTTCAGCGGCTCCGTGCGATCAACAAGGGGCACCATCCTCCTCGTAGGCGCCGTCATCTTTCTCACCATA TTCTGGGGCCTTTTCGCTACCTCGTCAGACTCGTGGGACCTCTCCAGCTCACACAGGACCAAATTTGCCTTCTCG CACGCACCCTCGGCTGTACCAGCCAAGTCAGTCTCGCCTCGCCCTTCTCCGCATGCCAAGCCGGACCACCCCGGT GACATCAACGTCGTCCAATATGCTAGTCAGTTGCGCAAATTCTTCTTCGAGCAGCTCTGGAGACCGTCGGTTGAG CCGACTGCCCTCCACTACCGCCCCTTCGGCGCCTACAATTGGAAGCTGCCTCGCCCTCCCCAATGGAACCGACCG CTGGGCAACGATCTTTGCATCATCGACCTGGATACTCGCCCCTTCGACCGACCGGGCCAGATCTTTGGGCCCGAA TTCATGACGTGGGATAATCCCCTCGGCGTCCATGGATTGTCCCTCGGCATACTCAACCACTGGCTCTACGCCAAG ATTCATGGTTACAAGTATTACTACGTCGCCGTCAGCGAACCCGCCGACCGTCGGTCCTCGTGGAAGAAGCCACCC ATCATGGCCAAGATCCTCAAGGAGCACGACGTCTGCCTGTACCTCGACTCGGACGCCATCTTCCCTCGCCTCGAC CTGCCTTTTGAGTGGCTGCTCAACTACTGGCAACTGTTTCCCGGGATAAACTCGCTCGCCCTCGCCGTCGATCCC GACCTGGAGCCCAACAAAGACAGGTTTGGCAAGCTTTTCCTGAACACGGGCTTCATCGTCGCGCAGAACAATCCC AAGACATACGAAATCCTCGATGCCTGGCAGAAATGTCCCGACGAGGGGCACCCTTACCCGGGCTGCGTCGAATTT CGCTACAACGAGCCCGGTCGACCGACCGACCAGGGCGGTTTCGGCACCTTTGTCCGCTACAACTTTAGTGACGCC ATCAAGGAGCTCCCTTGCACCGAGGCCAACGGGTTTCCGCAGAACGACTGGGGCTGCAAGGGCCAGTTCATTCGC CACCTGTGGACGGGCAAGGCGGACCAGATCAAGGTCGACGTGGGCGAGCAGCTTCCCGGCCCCTATCTTCAGCTT TTCCATCAGCAGTTCAGGGACGAACAGGATGAGTTTTATCTCACCGAATCCGCCTTGATGAGCAAGGGACCCAAA GCAGCGGCAAAGACGGCTCAGTTCACAAAGGGCGCGCAGGGCGGAGGCTGGCACGCGCCCCAACACGGAGCAGAG GCGGGGAACCAGCCGCCAACGGGCTCGCACAGGGAGGCCGGCCAGGAACCCCGAACCGGCAGCGAACCCAAGACG GAACAATCCGCCGAGAGCCGGCCACCCGAGCACGAACCAGTGCCTGGAAGCAGTGAAGAAGATCCGATTAACGAA GAGAACGCATAG |
| Transcript | >Hirsu2|5676 ATGGTCTTCAGCGGCTCCGTGCGATCAACAAGGGGCACCATCCTCCTCGTAGGCGCCGTCATCTTTCTCACCATA TTCTGGGGCCTTTTCGCTACCTCGTCAGACTCGTGGGACCTCTCCAGCTCACACAGGACCAAATTTGCCTTCTCG CACGCACCCTCGGCTGTACCAGCCAAGTCAGTCTCGCCTCGCCCTTCTCCGCATGCCAAGCCGGACCACCCCGGT GACATCAACGTCGTCCAATATGCTAGTCAGTTGCGCAAATTCTTCTTCGAGCAGCTCTGGAGACCGTCGGTTGAG CCGACTGCCCTCCACTACCGCCCCTTCGGCGCCTACAATTGGAAGCTGCCTCGCCCTCCCCAATGGAACCGACCG CTGGGCAACGATCTTTGCATCATCGACCTGGATACTCGCCCCTTCGACCGACCGGGCCAGATCTTTGGGCCCGAA TTCATGACGTGGGATAATCCCCTCGGCGTCCATGGATTGTCCCTCGGCATACTCAACCACTGGCTCTACGCCAAG ATTCATGGTTACAAGTATTACTACGTCGCCGTCAGCGAACCCGCCGACCGTCGGTCCTCGTGGAAGAAGCCACCC ATCATGGCCAAGATCCTCAAGGAGCACGACGTCTGCCTGTACCTCGACTCGGACGCCATCTTCCCTCGCCTCGAC CTGCCTTTTGAGTGGCTGCTCAACTACTGGCAACTGTTTCCCGGGATAAACTCGCTCGCCCTCGCCGTCGATCCC GACCTGGAGCCCAACAAAGACAGGTTTGGCAAGCTTTTCCTGAACACGGGCTTCATCGTCGCGCAGAACAATCCC AAGACATACGAAATCCTCGATGCCTGGCAGAAATGTCCCGACGAGGGGCACCCTTACCCGGGCTGCGTCGAATTT CGCTACAACGAGCCCGGTCGACCGACCGACCAGGGCGGTTTCGGCACCTTTGTCCGCTACAACTTTAGTGACGCC ATCAAGGAGCTCCCTTGCACCGAGGCCAACGGGTTTCCGCAGAACGACTGGGGCTGCAAGGGCCAGTTCATTCGC CACCTGTGGACGGGCAAGGCGGACCAGATCAAGGTCGACGTGGGCGAGCAGCTTCCCGGCCCCTATCTTCAGCTT TTCCATCAGCAGTTCAGGGACGAACAGGATGAGTTTTATCTCACCGAATCCGCCTTGATGAGCAAGGGACCCAAA GCAGCGGCAAAGACGGCTCAGTTCACAAAGGGCGCGCAGGGCGGAGGCTGGCACGCGCCCCAACACGGAGCAGAG GCGGGGAACCAGCCGCCAACGGGCTCGCACAGGGAGGCCGGCCAGGAACCCCGAACCGGCAGCGAACCCAAGACG GAACAATCCGCCGAGAGCCGGCCACCCGAGCACGAACCAGTGCCTGGAAGCAGTGAAGAAGATCCGATTAACGAA GAGAACGCATAG |
| Gene | >Hirsu2|5676 ATGGTCTTCAGCGGCTCCGTGCGATCAACAAGGGGCACCATCCTCCTCGTAGGCGCCGTCATCTTTCTCACCATA TTCTGGGGCCTTTTCGCTACCTCGTCAGACTCGTGGGACCTCTCCAGGTTTGTCGTCTTGCCCTTCGCCGTCCGA GAAGCGACGCTGACGTTGTCGGGAAAGCTCACACAGGACCAAATTTGCCTTCTCGCACGCACCCTCGGCTGTACC AGCCAAGTCAGTCTCGCCTCGCCCTTCTCCGCATGCCAAGCCGGACCACCCCGGTGACATCAACGTCGTCCAATA TGCTAGTCAGTTGCGCAAATTCTTCTTCGAGCAGCTCTGGAGACCGTCGGTTGAGCCGACTGCCCTCCACTACCG CCCCTTCGGCGCCTACAATTGGAAGCTGCCTCGCCCTCCCCAATGGAACCGACCGCTGGGCAACGATCTTTGCAT CATCGACCTGGATACTCGCCCCTTCGACCGACCGGGCCAGATCTTTGGGCCCGAATTCATGACGTGGGATAATCC CCTCGGCGTCCATGGATTGTCCCTCGGCATACTCAACCACTGGCTCTACGGTACGCCTCGCGCCCTTGCCTCAAC TCACCCCGCCCAGCTGACATTGCCTCGGCCTCAAAGCCAAGATTCATGGTTACAAGTATTACTACGTCGCCGTCA GCGAACCCGCCGACCGTCGGTCCTCGTGGAAGAAGCCACCCATCATGGCCAAGATCCTCAAGGAGCACGACGTCT GCCTGTACCTCGACTCGGACGCCATCTTCCCTCGCCTCGACCTGCCTTTTGAGTGGCTGCTCAACTACTGGCAAC TGTTTCCCGGGATAAACTCGCTCGCCCTCGCCGTCGATCCCGACCTGGAGCCCAACAAAGACAGGTTTGGCAAGC TTTTCCTGAACACGGGCTTCATCGTCGCGCAGAACAATCCCAAGACATACGAAATCCTCGATGCCTGGCAGAAAT GTCCCGACGAGGGGCACCCTTACCCGGGCTGCGTCGAATTTCGCTACAACGAGCCCGGTCGACCGACCGACCAGG GCGGTTTCGGCACCTTTGTCCGCTACAACTTTAGTGACGCCATCAAGGAGCTCCCTTGCACCGAGGCCAACGGGT TTCCGCAGAACGACTGGGGCTGCAAGGGCCAGTTCATTCGCCACCTGTGGACGGGCAAGGCGGACCAGATCAAGG TCGACGTGGGCGAGCAGCTTCCCGGCCCCTATCTTCAGCTTTTCCATCAGCAGTTCAGGGACGAACAGGATGAGT TTTATCTCACCGAATCCGCCTTGATGAGCAAGGGACCCAAAGCAGCGGCAAAGACGGCTCAGTTCACAAAGGGCG CGCAGGGCGGAGGCTGGCACGCGCCCCAACACGGAGCAGAGGCGGGGAACCAGCCGCCAACGGGCTCGCACAGGG AGGCCGGCCAGGAACCCCGAACCGGCAGCGAACCCAAGACGGAACAATCCGCCGAGAGCCGGCCACCCGAGCACG AACCAGTGCCTGGAAGCAGTGAAGAAGATCCGATTAACGAAGAGAACGCATAG |