© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5617 |
| Gene name | |
| Location | Contig_282:206..2992 |
| Strand | - |
| Gene length (bp) | 2786 |
| Transcript length (bp) | 2724 |
| Coding sequence length (bp) | 2724 |
| Protein length (aa) | 908 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00249 | Myb_DNA-binding | Myb-like DNA-binding domain | 5.2E-09 | 496 | 540 |
| PF00249 | Myb_DNA-binding | Myb-like DNA-binding domain | 2.2E-05 | 549 | 617 |
| PF13921 | Myb_DNA-bind_6 | Myb-like DNA-binding domain | 1.9E-10 | 499 | 559 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05950|REB1_KLULA | DNA-binding protein REB1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REB1 PE=3 SV=2 | 466 | 710 | 2.0E-23 |
| sp|Q12457|NSI1_YEAST | RNA polymerase I termination factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSI1 PE=1 SV=1 | 466 | 617 | 2.0E-20 |
| sp|Q9P6H9|REB1_SCHPO | DNA-binding protein reb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=reb1 PE=3 SV=1 | 418 | 708 | 2.0E-15 |
| sp|P21538|REB1_YEAST | DNA-binding protein REB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REB1 PE=1 SV=2 | 466 | 580 | 4.0E-13 |
| sp|Q9UUI6|RTF_SCHPO | Replication termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtf1 PE=1 SV=2 | 417 | 617 | 9.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05950|REB1_KLULA | DNA-binding protein REB1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REB1 PE=3 SV=2 | 466 | 710 | 2.0E-23 |
| sp|Q12457|NSI1_YEAST | RNA polymerase I termination factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSI1 PE=1 SV=1 | 466 | 617 | 2.0E-20 |
| sp|Q9P6H9|REB1_SCHPO | DNA-binding protein reb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=reb1 PE=3 SV=1 | 418 | 708 | 2.0E-15 |
| sp|P21538|REB1_YEAST | DNA-binding protein REB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REB1 PE=1 SV=2 | 466 | 580 | 4.0E-13 |
| sp|Q9UUI6|RTF_SCHPO | Replication termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtf1 PE=1 SV=2 | 417 | 617 | 9.0E-09 |
| sp|Q54TN2|MYBC_DICDI | Myb-like protein C OS=Dictyostelium discoideum GN=mybC PE=1 SV=1 | 436 | 619 | 8.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5617 MEDQESIGPEGLSDLQSEMDDGDFEIEMFDSINAPAPFSSAQPAPFSSSGQAPEAVMVEETPPLSPEKPDHDRDA SSRAVESSLPPPDATDKKNKKKSKKSRKEKAAKTGIPDSQEHDDATTGDGELFVPSSTLTAGGPVQSADSLLELD LDEGDKTTKSSKKKRKNSNAAESKRRKKRRSLGQDDPREQNYTDGASHLAAAAAFLRRSKDAVPPPEMAIEEEAA DKSDPQKSPTITHLRRRSQPRSRSRENSIPPVDDADPMDVDPEPVPNVDPTVEQPGEADADAEVEALAREAWNEH RNSQNAHVDTQDGDRTPAAAEPPRPSSQRPRSTRKKAKPTFYEQPPTEPISDEAYVPPELPSPSAMTPKPRNRSK VAAKKTARGKRPKREEARDTPEDDDGEDRSQRMPRNRLVGFTQGRFSDEEIARIGTAIESFRVDHDLTQEQVNHM IHAPGGTTAGDEHAQLWLRVFAECPNRHRQKVINIARKKFHNFIARGTWTLEQDAELTDLINVHGKKWSKIAAII NRHPEDLRDRYRNYLVCGERQRKDAWDDTEEKNLTQYIIEAMEQIDELRTDKNPNRDIVTLSYEELIDWQNISER MGRTRSRLQCITKWKSLNIRTHGKDKLVSTEPDASISFRLERARRQIAAMPEEEKFRMVLAIQGTAAGKDSKIPW HRLVDKPFRHRWHRSTLMLLWQRLRQMVPGGENKTSRDCAHYLAEVYNETGELPEVEQGFDDVQEMAFMEKIPPA FGGRLGPPPAQEQEKKSAEFVVDSDVEGADVTANGIGAEGVKEDDLQIDPALTQVDVPARKSVAAKRTGSGKPPS RKKTKKAPTANMGPGPMEDEDDGPSEEQASGSDKEGEAGEDAVGPRQQTSTQSEQQPPSPHSEGSDSLMDDMDDL PARLPAV* |
| Coding | >Hirsu2|5617 ATGGAGGACCAGGAATCCATCGGACCCGAAGGCCTAAGCGACTTGCAGAGCGAAATGGACGACGGCGACTTCGAA ATCGAAATGTTCGACAGCATCAACGCGCCCGCTCCCTTCTCGAGCGCGCAGCCGGCGCCCTTCTCGTCGAGCGGC CAAGCACCCGAAGCCGTCATGGTCGAAGAAACACCGCCTCTCTCGCCCGAGAAGCCAGACCATGACCGAGACGCG TCTTCACGCGCCGTTGAGTCGTCCTTGCCTCCGCCCGACGCCACCGACAAGAAGAACAAGAAGAAGAGCAAAAAA TCCCGGAAGGAGAAGGCGGCCAAGACCGGGATCCCCGACAGTCAAGAACACGACGATGCCACCACCGGCGACGGC GAACTATTCGTGCCGTCTTCGACCTTGACTGCCGGCGGCCCAGTCCAATCCGCGGACTCGCTGCTGGAGCTCGAC CTTGACGAGGGTGACAAGACGACCAAGTCCTCCAAGAAGAAACGCAAAAACTCCAATGCTGCAGAGAGCAAGCGG CGGAAGAAGAGACGGTCCCTGGGTCAAGACGACCCGCGTGAGCAAAATTATACCGATGGTGCCAGCCATCTGGCG GCCGCCGCCGCCTTCTTGCGACGAAGCAAAGATGCCGTTCCGCCGCCCGAAATGGCCATCGAGGAGGAGGCCGCA GACAAGTCGGACCCGCAAAAGTCGCCCACCATCACCCATCTACGGCGTCGCAGCCAGCCCCGGTCGAGGTCGAGG GAGAATAGCATTCCCCCAGTAGACGACGCCGATCCGATGGACGTCGACCCCGAACCTGTCCCGAATGTGGACCCG ACTGTCGAACAGCCTGGAGAGGCGGACGCCGATGCCGAAGTAGAGGCCCTGGCCAGGGAGGCCTGGAACGAGCAC CGGAACAGCCAGAACGCGCATGTCGACACCCAGGACGGCGACAGGACCCCGGCGGCGGCCGAGCCTCCCCGCCCA TCCTCACAGCGGCCGCGGTCGACCAGGAAGAAGGCCAAGCCGACGTTCTATGAGCAGCCCCCGACCGAGCCCATC TCGGACGAGGCATACGTCCCGCCGGAATTGCCTTCGCCCTCAGCCATGACGCCGAAGCCTAGAAACCGGTCCAAG GTTGCCGCGAAGAAGACGGCCAGGGGGAAGCGGCCCAAGAGGGAGGAAGCGCGCGACACGCCCGAGGACGACGAC GGGGAGGACAGGTCCCAGCGAATGCCGCGAAACCGTCTCGTCGGCTTCACCCAGGGGCGATTCTCCGATGAGGAG ATCGCCCGCATCGGCACGGCGATAGAGAGTTTCCGGGTCGATCATGACCTCACTCAGGAGCAAGTAAATCATATG ATTCACGCACCGGGCGGTACCACTGCCGGCGACGAGCACGCCCAGCTCTGGCTTCGCGTCTTTGCCGAGTGCCCG AACCGGCATCGACAGAAAGTCATCAACATCGCGCGCAAGAAATTCCACAACTTCATCGCCCGCGGAACCTGGACT CTGGAGCAGGATGCCGAGCTGACGGACCTCATCAACGTCCACGGCAAGAAATGGTCCAAAATCGCCGCCATCATC AACCGCCATCCGGAGGACCTCCGAGACCGGTATCGCAACTATCTCGTCTGCGGCGAGCGGCAGCGCAAGGATGCG TGGGACGACACCGAGGAGAAGAACCTGACACAATACATCATCGAGGCCATGGAGCAGATTGACGAGCTGAGGACG GACAAGAATCCGAACCGGGATATCGTCACCCTGTCATACGAGGAGCTCATCGACTGGCAGAACATAAGCGAGAGA ATGGGCCGGACCAGGAGTCGGCTACAGTGCATCACCAAGTGGAAGTCGCTCAACATCCGCACGCACGGCAAGGAC AAACTGGTCTCGACCGAGCCGGATGCCAGCATCTCGTTCCGGCTGGAGAGGGCCAGGCGGCAGATCGCGGCCATG CCGGAGGAGGAGAAGTTCCGGATGGTGCTGGCCATACAGGGGACGGCGGCGGGCAAGGATTCCAAGATCCCGTGG CATCGGCTGGTGGACAAGCCGTTTCGCCACCGCTGGCACCGCTCCACCCTGATGCTCCTGTGGCAGAGGCTGAGG CAGATGGTCCCCGGCGGGGAGAACAAGACGTCGCGTGACTGCGCCCACTACCTGGCCGAGGTATACAACGAGACC GGGGAGCTGCCCGAGGTGGAGCAGGGCTTCGACGACGTGCAGGAGATGGCGTTCATGGAGAAGATCCCGCCGGCG TTTGGTGGGCGCCTCGGCCCGCCGCCGGCGCAGGAGCAGGAGAAGAAGAGCGCCGAATTCGTGGTGGACTCGGAC GTGGAGGGGGCGGACGTGACGGCGAACGGCATCGGGGCCGAGGGCGTCAAGGAAGACGACCTCCAGATCGACCCA GCGCTCACGCAGGTGGACGTGCCGGCCAGGAAGTCGGTCGCGGCGAAGAGGACGGGCTCGGGGAAGCCGCCGTCG CGGAAGAAGACCAAAAAGGCACCGACGGCCAACATGGGCCCGGGCCCGATGGAGGATGAGGATGACGGCCCGAGC GAAGAGCAGGCATCCGGAAGCGACAAGGAGGGCGAAGCGGGAGAGGATGCGGTGGGCCCTCGACAGCAGACGTCG ACGCAATCAGAGCAGCAGCCACCTTCACCTCACAGCGAGGGATCGGACAGCCTCATGGACGACATGGACGACCTG CCGGCTCGGCTGCCGGCCGTATAA |
| Transcript | >Hirsu2|5617 ATGGAGGACCAGGAATCCATCGGACCCGAAGGCCTAAGCGACTTGCAGAGCGAAATGGACGACGGCGACTTCGAA ATCGAAATGTTCGACAGCATCAACGCGCCCGCTCCCTTCTCGAGCGCGCAGCCGGCGCCCTTCTCGTCGAGCGGC CAAGCACCCGAAGCCGTCATGGTCGAAGAAACACCGCCTCTCTCGCCCGAGAAGCCAGACCATGACCGAGACGCG TCTTCACGCGCCGTTGAGTCGTCCTTGCCTCCGCCCGACGCCACCGACAAGAAGAACAAGAAGAAGAGCAAAAAA TCCCGGAAGGAGAAGGCGGCCAAGACCGGGATCCCCGACAGTCAAGAACACGACGATGCCACCACCGGCGACGGC GAACTATTCGTGCCGTCTTCGACCTTGACTGCCGGCGGCCCAGTCCAATCCGCGGACTCGCTGCTGGAGCTCGAC CTTGACGAGGGTGACAAGACGACCAAGTCCTCCAAGAAGAAACGCAAAAACTCCAATGCTGCAGAGAGCAAGCGG CGGAAGAAGAGACGGTCCCTGGGTCAAGACGACCCGCGTGAGCAAAATTATACCGATGGTGCCAGCCATCTGGCG GCCGCCGCCGCCTTCTTGCGACGAAGCAAAGATGCCGTTCCGCCGCCCGAAATGGCCATCGAGGAGGAGGCCGCA GACAAGTCGGACCCGCAAAAGTCGCCCACCATCACCCATCTACGGCGTCGCAGCCAGCCCCGGTCGAGGTCGAGG GAGAATAGCATTCCCCCAGTAGACGACGCCGATCCGATGGACGTCGACCCCGAACCTGTCCCGAATGTGGACCCG ACTGTCGAACAGCCTGGAGAGGCGGACGCCGATGCCGAAGTAGAGGCCCTGGCCAGGGAGGCCTGGAACGAGCAC CGGAACAGCCAGAACGCGCATGTCGACACCCAGGACGGCGACAGGACCCCGGCGGCGGCCGAGCCTCCCCGCCCA TCCTCACAGCGGCCGCGGTCGACCAGGAAGAAGGCCAAGCCGACGTTCTATGAGCAGCCCCCGACCGAGCCCATC TCGGACGAGGCATACGTCCCGCCGGAATTGCCTTCGCCCTCAGCCATGACGCCGAAGCCTAGAAACCGGTCCAAG GTTGCCGCGAAGAAGACGGCCAGGGGGAAGCGGCCCAAGAGGGAGGAAGCGCGCGACACGCCCGAGGACGACGAC GGGGAGGACAGGTCCCAGCGAATGCCGCGAAACCGTCTCGTCGGCTTCACCCAGGGGCGATTCTCCGATGAGGAG ATCGCCCGCATCGGCACGGCGATAGAGAGTTTCCGGGTCGATCATGACCTCACTCAGGAGCAAGTAAATCATATG ATTCACGCACCGGGCGGTACCACTGCCGGCGACGAGCACGCCCAGCTCTGGCTTCGCGTCTTTGCCGAGTGCCCG AACCGGCATCGACAGAAAGTCATCAACATCGCGCGCAAGAAATTCCACAACTTCATCGCCCGCGGAACCTGGACT CTGGAGCAGGATGCCGAGCTGACGGACCTCATCAACGTCCACGGCAAGAAATGGTCCAAAATCGCCGCCATCATC AACCGCCATCCGGAGGACCTCCGAGACCGGTATCGCAACTATCTCGTCTGCGGCGAGCGGCAGCGCAAGGATGCG TGGGACGACACCGAGGAGAAGAACCTGACACAATACATCATCGAGGCCATGGAGCAGATTGACGAGCTGAGGACG GACAAGAATCCGAACCGGGATATCGTCACCCTGTCATACGAGGAGCTCATCGACTGGCAGAACATAAGCGAGAGA ATGGGCCGGACCAGGAGTCGGCTACAGTGCATCACCAAGTGGAAGTCGCTCAACATCCGCACGCACGGCAAGGAC AAACTGGTCTCGACCGAGCCGGATGCCAGCATCTCGTTCCGGCTGGAGAGGGCCAGGCGGCAGATCGCGGCCATG CCGGAGGAGGAGAAGTTCCGGATGGTGCTGGCCATACAGGGGACGGCGGCGGGCAAGGATTCCAAGATCCCGTGG CATCGGCTGGTGGACAAGCCGTTTCGCCACCGCTGGCACCGCTCCACCCTGATGCTCCTGTGGCAGAGGCTGAGG CAGATGGTCCCCGGCGGGGAGAACAAGACGTCGCGTGACTGCGCCCACTACCTGGCCGAGGTATACAACGAGACC GGGGAGCTGCCCGAGGTGGAGCAGGGCTTCGACGACGTGCAGGAGATGGCGTTCATGGAGAAGATCCCGCCGGCG TTTGGTGGGCGCCTCGGCCCGCCGCCGGCGCAGGAGCAGGAGAAGAAGAGCGCCGAATTCGTGGTGGACTCGGAC GTGGAGGGGGCGGACGTGACGGCGAACGGCATCGGGGCCGAGGGCGTCAAGGAAGACGACCTCCAGATCGACCCA GCGCTCACGCAGGTGGACGTGCCGGCCAGGAAGTCGGTCGCGGCGAAGAGGACGGGCTCGGGGAAGCCGCCGTCG CGGAAGAAGACCAAAAAGGCACCGACGGCCAACATGGGCCCGGGCCCGATGGAGGATGAGGATGACGGCCCGAGC GAAGAGCAGGCATCCGGAAGCGACAAGGAGGGCGAAGCGGGAGAGGATGCGGTGGGCCCTCGACAGCAGACGTCG ACGCAATCAGAGCAGCAGCCACCTTCACCTCACAGCGAGGGATCGGACAGCCTCATGGACGACATGGACGACCTG CCGGCTCGGCTGCCGGCCGTATAA |
| Gene | >Hirsu2|5617 ATGGAGGACCAGGAATCCATCGGACCCGAAGGCCTAAGCGACTTGCAGAGCGAAATGGACGACGGCGACTTCGAA ATCGAAATGTTCGACAGCATCAACGCGCCCGCTCCCTTCTCGAGCGCGCAGCCGGCGCCCTTCTCGTCGAGCGGC CAAGCACCCGAAGCCGTCATGGTCGAAGAAACACCGCCTCTCTCGCCCGAGAAGCCAGACCATGACCGAGACGCG TCTTCACGCGCCGTTGAGTCGTCCTTGCCTCCGCCCGACGCCACCGACAAGAAGAACAAGAAGAAGAGCAAAAAA TCCCGGAAGGAGAAGGCGGCCAAGACCGGGATCCCCGACAGTCAAGAACACGACGATGCCACCACCGGCGACGGC GAACTATTCGTGCCGTCTTCGACCTTGACTGCCGGCGGCCCAGTCCAATCCGCGGACTCGCTGCTGGAGCTCGAC CTTGACGAGGGTGACAAGACGACCAAGTCCTCCAAGAAGAAACGCAAAAACTCCAATGCTGCAGAGAGCAAGCGG CGGAAGAAGAGACGGTCCCTGGGTCAAGACGACCCGCGTGAGCAAAATTATACCGATGGTGCCAGCCATCTGGCG GCCGCCGCCGCCTTCTTGCGACGAAGCAAAGATGCCGTTCCGCCGCCCGAAATGGCCATCGAGGAGGAGGCCGCA GACAAGTCGGACCCGCAAAAGTCGCCCACCATCACCCATCTACGGCGTCGCAGCCAGCCCCGGTCGAGGTCGAGG GAGAATAGCATTCCCCCAGTAGACGACGCCGATCCGATGGACGTCGACCCCGAACCTGTCCCGAATGTGGACCCG ACTGTCGAACAGCCTGGAGAGGCGGACGCCGATGCCGAAGTAGAGGCCCTGGCCAGGGAGGCCTGGAACGAGCAC CGGAACAGCCAGAACGCGCATGTCGACACCCAGGACGGCGACAGGACCCCGGCGGCGGCCGAGCCTCCCCGCCCA TCCTCACAGCGGCCGCGGTCGACCAGGAAGAAGGCCAAGCCGACGTTCTATGAGCAGCCCCCGACCGAGCCCATC TCGGACGAGGCATACGTCCCGCCGGAATTGCCTTCGCCCTCAGCCATGACGCCGAAGCCTAGAAACCGGTCCAAG GTTGCCGCGAAGAAGACGGCCAGGGGGAAGCGGCCCAAGAGGGAGGAAGCGCGCGACACGCCCGAGGACGACGAC GGGGAGGACAGGTCCCAGCGAATGCCGCGAAACCGTCTCGTCGGCTTCACCCAGGGGCGATTCTCCGATGAGGAG ATCGCCCGCATCGGCACGGCGATAGAGAGTTTCCGGGTCGATCATGACCTCACTCAGGAGCAAGTAAATCATGTG AGCCAGACTGCCTTTTCCTCGCCGCGGCTGACGCAAAGACTGACGAGAAGAAAATGTAGATGATTCACGCACCGG GCGGTACCACTGCCGGCGACGAGCACGCCCAGCTCTGGCTTCGCGTCTTTGCCGAGTGCCCGAACCGGCATCGAC AGAAAGTCATCAACATCGCGCGCAAGAAATTCCACAACTTCATCGCCCGCGGAACCTGGACTCTGGAGCAGGATG CCGAGCTGACGGACCTCATCAACGTCCACGGCAAGAAATGGTCCAAAATCGCCGCCATCATCAACCGCCATCCGG AGGACCTCCGAGACCGGTATCGCAACTATCTCGTCTGCGGCGAGCGGCAGCGCAAGGATGCGTGGGACGACACCG AGGAGAAGAACCTGACACAATACATCATCGAGGCCATGGAGCAGATTGACGAGCTGAGGACGGACAAGAATCCGA ACCGGGATATCGTCACCCTGTCATACGAGGAGCTCATCGACTGGCAGAACATAAGCGAGAGAATGGGCCGGACCA GGAGTCGGCTACAGTGCATCACCAAGTGGAAGTCGCTCAACATCCGCACGCACGGCAAGGACAAACTGGTCTCGA CCGAGCCGGATGCCAGCATCTCGTTCCGGCTGGAGAGGGCCAGGCGGCAGATCGCGGCCATGCCGGAGGAGGAGA AGTTCCGGATGGTGCTGGCCATACAGGGGACGGCGGCGGGCAAGGATTCCAAGATCCCGTGGCATCGGCTGGTGG ACAAGCCGTTTCGCCACCGCTGGCACCGCTCCACCCTGATGCTCCTGTGGCAGAGGCTGAGGCAGATGGTCCCCG GCGGGGAGAACAAGACGTCGCGTGACTGCGCCCACTACCTGGCCGAGGTATACAACGAGACCGGGGAGCTGCCCG AGGTGGAGCAGGGCTTCGACGACGTGCAGGAGATGGCGTTCATGGAGAAGATCCCGCCGGCGTTTGGTGGGCGCC TCGGCCCGCCGCCGGCGCAGGAGCAGGAGAAGAAGAGCGCCGAATTCGTGGTGGACTCGGACGTGGAGGGGGCGG ACGTGACGGCGAACGGCATCGGGGCCGAGGGCGTCAAGGAAGACGACCTCCAGATCGACCCAGCGCTCACGCAGG TGGACGTGCCGGCCAGGAAGTCGGTCGCGGCGAAGAGGACGGGCTCGGGGAAGCCGCCGTCGCGGAAGAAGACCA AAAAGGCACCGACGGCCAACATGGGCCCGGGCCCGATGGAGGATGAGGATGACGGCCCGAGCGAAGAGCAGGCAT CCGGAAGCGACAAGGAGGGCGAAGCGGGAGAGGATGCGGTGGGCCCTCGACAGCAGACGTCGACGCAATCAGAGC AGCAGCCACCTTCACCTCACAGCGAGGGATCGGACAGCCTCATGGACGACATGGACGACCTGCCGGCTCGGCTGC CGGCCGTATAA |