Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5617
Gene name
LocationContig_282:206..2992
Strand-
Gene length (bp)2786
Transcript length (bp)2724
Coding sequence length (bp)2724
Protein length (aa) 908

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00249 Myb_DNA-binding Myb-like DNA-binding domain 5.2E-09 496 540
PF00249 Myb_DNA-binding Myb-like DNA-binding domain 2.2E-05 549 617
PF13921 Myb_DNA-bind_6 Myb-like DNA-binding domain 1.9E-10 499 559

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q05950|REB1_KLULA DNA-binding protein REB1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REB1 PE=3 SV=2 466 710 2.0E-23
sp|Q12457|NSI1_YEAST RNA polymerase I termination factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSI1 PE=1 SV=1 466 617 2.0E-20
sp|Q9P6H9|REB1_SCHPO DNA-binding protein reb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=reb1 PE=3 SV=1 418 708 2.0E-15
sp|P21538|REB1_YEAST DNA-binding protein REB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REB1 PE=1 SV=2 466 580 4.0E-13
sp|Q9UUI6|RTF_SCHPO Replication termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtf1 PE=1 SV=2 417 617 9.0E-09
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q05950|REB1_KLULA DNA-binding protein REB1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REB1 PE=3 SV=2 466 710 2.0E-23
sp|Q12457|NSI1_YEAST RNA polymerase I termination factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSI1 PE=1 SV=1 466 617 2.0E-20
sp|Q9P6H9|REB1_SCHPO DNA-binding protein reb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=reb1 PE=3 SV=1 418 708 2.0E-15
sp|P21538|REB1_YEAST DNA-binding protein REB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REB1 PE=1 SV=2 466 580 4.0E-13
sp|Q9UUI6|RTF_SCHPO Replication termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtf1 PE=1 SV=2 417 617 9.0E-09
sp|Q54TN2|MYBC_DICDI Myb-like protein C OS=Dictyostelium discoideum GN=mybC PE=1 SV=1 436 619 8.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5617
MEDQESIGPEGLSDLQSEMDDGDFEIEMFDSINAPAPFSSAQPAPFSSSGQAPEAVMVEETPPLSPEKPDHDRDA
SSRAVESSLPPPDATDKKNKKKSKKSRKEKAAKTGIPDSQEHDDATTGDGELFVPSSTLTAGGPVQSADSLLELD
LDEGDKTTKSSKKKRKNSNAAESKRRKKRRSLGQDDPREQNYTDGASHLAAAAAFLRRSKDAVPPPEMAIEEEAA
DKSDPQKSPTITHLRRRSQPRSRSRENSIPPVDDADPMDVDPEPVPNVDPTVEQPGEADADAEVEALAREAWNEH
RNSQNAHVDTQDGDRTPAAAEPPRPSSQRPRSTRKKAKPTFYEQPPTEPISDEAYVPPELPSPSAMTPKPRNRSK
VAAKKTARGKRPKREEARDTPEDDDGEDRSQRMPRNRLVGFTQGRFSDEEIARIGTAIESFRVDHDLTQEQVNHM
IHAPGGTTAGDEHAQLWLRVFAECPNRHRQKVINIARKKFHNFIARGTWTLEQDAELTDLINVHGKKWSKIAAII
NRHPEDLRDRYRNYLVCGERQRKDAWDDTEEKNLTQYIIEAMEQIDELRTDKNPNRDIVTLSYEELIDWQNISER
MGRTRSRLQCITKWKSLNIRTHGKDKLVSTEPDASISFRLERARRQIAAMPEEEKFRMVLAIQGTAAGKDSKIPW
HRLVDKPFRHRWHRSTLMLLWQRLRQMVPGGENKTSRDCAHYLAEVYNETGELPEVEQGFDDVQEMAFMEKIPPA
FGGRLGPPPAQEQEKKSAEFVVDSDVEGADVTANGIGAEGVKEDDLQIDPALTQVDVPARKSVAAKRTGSGKPPS
RKKTKKAPTANMGPGPMEDEDDGPSEEQASGSDKEGEAGEDAVGPRQQTSTQSEQQPPSPHSEGSDSLMDDMDDL
PARLPAV*
Coding >Hirsu2|5617
ATGGAGGACCAGGAATCCATCGGACCCGAAGGCCTAAGCGACTTGCAGAGCGAAATGGACGACGGCGACTTCGAA
ATCGAAATGTTCGACAGCATCAACGCGCCCGCTCCCTTCTCGAGCGCGCAGCCGGCGCCCTTCTCGTCGAGCGGC
CAAGCACCCGAAGCCGTCATGGTCGAAGAAACACCGCCTCTCTCGCCCGAGAAGCCAGACCATGACCGAGACGCG
TCTTCACGCGCCGTTGAGTCGTCCTTGCCTCCGCCCGACGCCACCGACAAGAAGAACAAGAAGAAGAGCAAAAAA
TCCCGGAAGGAGAAGGCGGCCAAGACCGGGATCCCCGACAGTCAAGAACACGACGATGCCACCACCGGCGACGGC
GAACTATTCGTGCCGTCTTCGACCTTGACTGCCGGCGGCCCAGTCCAATCCGCGGACTCGCTGCTGGAGCTCGAC
CTTGACGAGGGTGACAAGACGACCAAGTCCTCCAAGAAGAAACGCAAAAACTCCAATGCTGCAGAGAGCAAGCGG
CGGAAGAAGAGACGGTCCCTGGGTCAAGACGACCCGCGTGAGCAAAATTATACCGATGGTGCCAGCCATCTGGCG
GCCGCCGCCGCCTTCTTGCGACGAAGCAAAGATGCCGTTCCGCCGCCCGAAATGGCCATCGAGGAGGAGGCCGCA
GACAAGTCGGACCCGCAAAAGTCGCCCACCATCACCCATCTACGGCGTCGCAGCCAGCCCCGGTCGAGGTCGAGG
GAGAATAGCATTCCCCCAGTAGACGACGCCGATCCGATGGACGTCGACCCCGAACCTGTCCCGAATGTGGACCCG
ACTGTCGAACAGCCTGGAGAGGCGGACGCCGATGCCGAAGTAGAGGCCCTGGCCAGGGAGGCCTGGAACGAGCAC
CGGAACAGCCAGAACGCGCATGTCGACACCCAGGACGGCGACAGGACCCCGGCGGCGGCCGAGCCTCCCCGCCCA
TCCTCACAGCGGCCGCGGTCGACCAGGAAGAAGGCCAAGCCGACGTTCTATGAGCAGCCCCCGACCGAGCCCATC
TCGGACGAGGCATACGTCCCGCCGGAATTGCCTTCGCCCTCAGCCATGACGCCGAAGCCTAGAAACCGGTCCAAG
GTTGCCGCGAAGAAGACGGCCAGGGGGAAGCGGCCCAAGAGGGAGGAAGCGCGCGACACGCCCGAGGACGACGAC
GGGGAGGACAGGTCCCAGCGAATGCCGCGAAACCGTCTCGTCGGCTTCACCCAGGGGCGATTCTCCGATGAGGAG
ATCGCCCGCATCGGCACGGCGATAGAGAGTTTCCGGGTCGATCATGACCTCACTCAGGAGCAAGTAAATCATATG
ATTCACGCACCGGGCGGTACCACTGCCGGCGACGAGCACGCCCAGCTCTGGCTTCGCGTCTTTGCCGAGTGCCCG
AACCGGCATCGACAGAAAGTCATCAACATCGCGCGCAAGAAATTCCACAACTTCATCGCCCGCGGAACCTGGACT
CTGGAGCAGGATGCCGAGCTGACGGACCTCATCAACGTCCACGGCAAGAAATGGTCCAAAATCGCCGCCATCATC
AACCGCCATCCGGAGGACCTCCGAGACCGGTATCGCAACTATCTCGTCTGCGGCGAGCGGCAGCGCAAGGATGCG
TGGGACGACACCGAGGAGAAGAACCTGACACAATACATCATCGAGGCCATGGAGCAGATTGACGAGCTGAGGACG
GACAAGAATCCGAACCGGGATATCGTCACCCTGTCATACGAGGAGCTCATCGACTGGCAGAACATAAGCGAGAGA
ATGGGCCGGACCAGGAGTCGGCTACAGTGCATCACCAAGTGGAAGTCGCTCAACATCCGCACGCACGGCAAGGAC
AAACTGGTCTCGACCGAGCCGGATGCCAGCATCTCGTTCCGGCTGGAGAGGGCCAGGCGGCAGATCGCGGCCATG
CCGGAGGAGGAGAAGTTCCGGATGGTGCTGGCCATACAGGGGACGGCGGCGGGCAAGGATTCCAAGATCCCGTGG
CATCGGCTGGTGGACAAGCCGTTTCGCCACCGCTGGCACCGCTCCACCCTGATGCTCCTGTGGCAGAGGCTGAGG
CAGATGGTCCCCGGCGGGGAGAACAAGACGTCGCGTGACTGCGCCCACTACCTGGCCGAGGTATACAACGAGACC
GGGGAGCTGCCCGAGGTGGAGCAGGGCTTCGACGACGTGCAGGAGATGGCGTTCATGGAGAAGATCCCGCCGGCG
TTTGGTGGGCGCCTCGGCCCGCCGCCGGCGCAGGAGCAGGAGAAGAAGAGCGCCGAATTCGTGGTGGACTCGGAC
GTGGAGGGGGCGGACGTGACGGCGAACGGCATCGGGGCCGAGGGCGTCAAGGAAGACGACCTCCAGATCGACCCA
GCGCTCACGCAGGTGGACGTGCCGGCCAGGAAGTCGGTCGCGGCGAAGAGGACGGGCTCGGGGAAGCCGCCGTCG
CGGAAGAAGACCAAAAAGGCACCGACGGCCAACATGGGCCCGGGCCCGATGGAGGATGAGGATGACGGCCCGAGC
GAAGAGCAGGCATCCGGAAGCGACAAGGAGGGCGAAGCGGGAGAGGATGCGGTGGGCCCTCGACAGCAGACGTCG
ACGCAATCAGAGCAGCAGCCACCTTCACCTCACAGCGAGGGATCGGACAGCCTCATGGACGACATGGACGACCTG
CCGGCTCGGCTGCCGGCCGTATAA
Transcript >Hirsu2|5617
ATGGAGGACCAGGAATCCATCGGACCCGAAGGCCTAAGCGACTTGCAGAGCGAAATGGACGACGGCGACTTCGAA
ATCGAAATGTTCGACAGCATCAACGCGCCCGCTCCCTTCTCGAGCGCGCAGCCGGCGCCCTTCTCGTCGAGCGGC
CAAGCACCCGAAGCCGTCATGGTCGAAGAAACACCGCCTCTCTCGCCCGAGAAGCCAGACCATGACCGAGACGCG
TCTTCACGCGCCGTTGAGTCGTCCTTGCCTCCGCCCGACGCCACCGACAAGAAGAACAAGAAGAAGAGCAAAAAA
TCCCGGAAGGAGAAGGCGGCCAAGACCGGGATCCCCGACAGTCAAGAACACGACGATGCCACCACCGGCGACGGC
GAACTATTCGTGCCGTCTTCGACCTTGACTGCCGGCGGCCCAGTCCAATCCGCGGACTCGCTGCTGGAGCTCGAC
CTTGACGAGGGTGACAAGACGACCAAGTCCTCCAAGAAGAAACGCAAAAACTCCAATGCTGCAGAGAGCAAGCGG
CGGAAGAAGAGACGGTCCCTGGGTCAAGACGACCCGCGTGAGCAAAATTATACCGATGGTGCCAGCCATCTGGCG
GCCGCCGCCGCCTTCTTGCGACGAAGCAAAGATGCCGTTCCGCCGCCCGAAATGGCCATCGAGGAGGAGGCCGCA
GACAAGTCGGACCCGCAAAAGTCGCCCACCATCACCCATCTACGGCGTCGCAGCCAGCCCCGGTCGAGGTCGAGG
GAGAATAGCATTCCCCCAGTAGACGACGCCGATCCGATGGACGTCGACCCCGAACCTGTCCCGAATGTGGACCCG
ACTGTCGAACAGCCTGGAGAGGCGGACGCCGATGCCGAAGTAGAGGCCCTGGCCAGGGAGGCCTGGAACGAGCAC
CGGAACAGCCAGAACGCGCATGTCGACACCCAGGACGGCGACAGGACCCCGGCGGCGGCCGAGCCTCCCCGCCCA
TCCTCACAGCGGCCGCGGTCGACCAGGAAGAAGGCCAAGCCGACGTTCTATGAGCAGCCCCCGACCGAGCCCATC
TCGGACGAGGCATACGTCCCGCCGGAATTGCCTTCGCCCTCAGCCATGACGCCGAAGCCTAGAAACCGGTCCAAG
GTTGCCGCGAAGAAGACGGCCAGGGGGAAGCGGCCCAAGAGGGAGGAAGCGCGCGACACGCCCGAGGACGACGAC
GGGGAGGACAGGTCCCAGCGAATGCCGCGAAACCGTCTCGTCGGCTTCACCCAGGGGCGATTCTCCGATGAGGAG
ATCGCCCGCATCGGCACGGCGATAGAGAGTTTCCGGGTCGATCATGACCTCACTCAGGAGCAAGTAAATCATATG
ATTCACGCACCGGGCGGTACCACTGCCGGCGACGAGCACGCCCAGCTCTGGCTTCGCGTCTTTGCCGAGTGCCCG
AACCGGCATCGACAGAAAGTCATCAACATCGCGCGCAAGAAATTCCACAACTTCATCGCCCGCGGAACCTGGACT
CTGGAGCAGGATGCCGAGCTGACGGACCTCATCAACGTCCACGGCAAGAAATGGTCCAAAATCGCCGCCATCATC
AACCGCCATCCGGAGGACCTCCGAGACCGGTATCGCAACTATCTCGTCTGCGGCGAGCGGCAGCGCAAGGATGCG
TGGGACGACACCGAGGAGAAGAACCTGACACAATACATCATCGAGGCCATGGAGCAGATTGACGAGCTGAGGACG
GACAAGAATCCGAACCGGGATATCGTCACCCTGTCATACGAGGAGCTCATCGACTGGCAGAACATAAGCGAGAGA
ATGGGCCGGACCAGGAGTCGGCTACAGTGCATCACCAAGTGGAAGTCGCTCAACATCCGCACGCACGGCAAGGAC
AAACTGGTCTCGACCGAGCCGGATGCCAGCATCTCGTTCCGGCTGGAGAGGGCCAGGCGGCAGATCGCGGCCATG
CCGGAGGAGGAGAAGTTCCGGATGGTGCTGGCCATACAGGGGACGGCGGCGGGCAAGGATTCCAAGATCCCGTGG
CATCGGCTGGTGGACAAGCCGTTTCGCCACCGCTGGCACCGCTCCACCCTGATGCTCCTGTGGCAGAGGCTGAGG
CAGATGGTCCCCGGCGGGGAGAACAAGACGTCGCGTGACTGCGCCCACTACCTGGCCGAGGTATACAACGAGACC
GGGGAGCTGCCCGAGGTGGAGCAGGGCTTCGACGACGTGCAGGAGATGGCGTTCATGGAGAAGATCCCGCCGGCG
TTTGGTGGGCGCCTCGGCCCGCCGCCGGCGCAGGAGCAGGAGAAGAAGAGCGCCGAATTCGTGGTGGACTCGGAC
GTGGAGGGGGCGGACGTGACGGCGAACGGCATCGGGGCCGAGGGCGTCAAGGAAGACGACCTCCAGATCGACCCA
GCGCTCACGCAGGTGGACGTGCCGGCCAGGAAGTCGGTCGCGGCGAAGAGGACGGGCTCGGGGAAGCCGCCGTCG
CGGAAGAAGACCAAAAAGGCACCGACGGCCAACATGGGCCCGGGCCCGATGGAGGATGAGGATGACGGCCCGAGC
GAAGAGCAGGCATCCGGAAGCGACAAGGAGGGCGAAGCGGGAGAGGATGCGGTGGGCCCTCGACAGCAGACGTCG
ACGCAATCAGAGCAGCAGCCACCTTCACCTCACAGCGAGGGATCGGACAGCCTCATGGACGACATGGACGACCTG
CCGGCTCGGCTGCCGGCCGTATAA
Gene >Hirsu2|5617
ATGGAGGACCAGGAATCCATCGGACCCGAAGGCCTAAGCGACTTGCAGAGCGAAATGGACGACGGCGACTTCGAA
ATCGAAATGTTCGACAGCATCAACGCGCCCGCTCCCTTCTCGAGCGCGCAGCCGGCGCCCTTCTCGTCGAGCGGC
CAAGCACCCGAAGCCGTCATGGTCGAAGAAACACCGCCTCTCTCGCCCGAGAAGCCAGACCATGACCGAGACGCG
TCTTCACGCGCCGTTGAGTCGTCCTTGCCTCCGCCCGACGCCACCGACAAGAAGAACAAGAAGAAGAGCAAAAAA
TCCCGGAAGGAGAAGGCGGCCAAGACCGGGATCCCCGACAGTCAAGAACACGACGATGCCACCACCGGCGACGGC
GAACTATTCGTGCCGTCTTCGACCTTGACTGCCGGCGGCCCAGTCCAATCCGCGGACTCGCTGCTGGAGCTCGAC
CTTGACGAGGGTGACAAGACGACCAAGTCCTCCAAGAAGAAACGCAAAAACTCCAATGCTGCAGAGAGCAAGCGG
CGGAAGAAGAGACGGTCCCTGGGTCAAGACGACCCGCGTGAGCAAAATTATACCGATGGTGCCAGCCATCTGGCG
GCCGCCGCCGCCTTCTTGCGACGAAGCAAAGATGCCGTTCCGCCGCCCGAAATGGCCATCGAGGAGGAGGCCGCA
GACAAGTCGGACCCGCAAAAGTCGCCCACCATCACCCATCTACGGCGTCGCAGCCAGCCCCGGTCGAGGTCGAGG
GAGAATAGCATTCCCCCAGTAGACGACGCCGATCCGATGGACGTCGACCCCGAACCTGTCCCGAATGTGGACCCG
ACTGTCGAACAGCCTGGAGAGGCGGACGCCGATGCCGAAGTAGAGGCCCTGGCCAGGGAGGCCTGGAACGAGCAC
CGGAACAGCCAGAACGCGCATGTCGACACCCAGGACGGCGACAGGACCCCGGCGGCGGCCGAGCCTCCCCGCCCA
TCCTCACAGCGGCCGCGGTCGACCAGGAAGAAGGCCAAGCCGACGTTCTATGAGCAGCCCCCGACCGAGCCCATC
TCGGACGAGGCATACGTCCCGCCGGAATTGCCTTCGCCCTCAGCCATGACGCCGAAGCCTAGAAACCGGTCCAAG
GTTGCCGCGAAGAAGACGGCCAGGGGGAAGCGGCCCAAGAGGGAGGAAGCGCGCGACACGCCCGAGGACGACGAC
GGGGAGGACAGGTCCCAGCGAATGCCGCGAAACCGTCTCGTCGGCTTCACCCAGGGGCGATTCTCCGATGAGGAG
ATCGCCCGCATCGGCACGGCGATAGAGAGTTTCCGGGTCGATCATGACCTCACTCAGGAGCAAGTAAATCATGTG
AGCCAGACTGCCTTTTCCTCGCCGCGGCTGACGCAAAGACTGACGAGAAGAAAATGTAGATGATTCACGCACCGG
GCGGTACCACTGCCGGCGACGAGCACGCCCAGCTCTGGCTTCGCGTCTTTGCCGAGTGCCCGAACCGGCATCGAC
AGAAAGTCATCAACATCGCGCGCAAGAAATTCCACAACTTCATCGCCCGCGGAACCTGGACTCTGGAGCAGGATG
CCGAGCTGACGGACCTCATCAACGTCCACGGCAAGAAATGGTCCAAAATCGCCGCCATCATCAACCGCCATCCGG
AGGACCTCCGAGACCGGTATCGCAACTATCTCGTCTGCGGCGAGCGGCAGCGCAAGGATGCGTGGGACGACACCG
AGGAGAAGAACCTGACACAATACATCATCGAGGCCATGGAGCAGATTGACGAGCTGAGGACGGACAAGAATCCGA
ACCGGGATATCGTCACCCTGTCATACGAGGAGCTCATCGACTGGCAGAACATAAGCGAGAGAATGGGCCGGACCA
GGAGTCGGCTACAGTGCATCACCAAGTGGAAGTCGCTCAACATCCGCACGCACGGCAAGGACAAACTGGTCTCGA
CCGAGCCGGATGCCAGCATCTCGTTCCGGCTGGAGAGGGCCAGGCGGCAGATCGCGGCCATGCCGGAGGAGGAGA
AGTTCCGGATGGTGCTGGCCATACAGGGGACGGCGGCGGGCAAGGATTCCAAGATCCCGTGGCATCGGCTGGTGG
ACAAGCCGTTTCGCCACCGCTGGCACCGCTCCACCCTGATGCTCCTGTGGCAGAGGCTGAGGCAGATGGTCCCCG
GCGGGGAGAACAAGACGTCGCGTGACTGCGCCCACTACCTGGCCGAGGTATACAACGAGACCGGGGAGCTGCCCG
AGGTGGAGCAGGGCTTCGACGACGTGCAGGAGATGGCGTTCATGGAGAAGATCCCGCCGGCGTTTGGTGGGCGCC
TCGGCCCGCCGCCGGCGCAGGAGCAGGAGAAGAAGAGCGCCGAATTCGTGGTGGACTCGGACGTGGAGGGGGCGG
ACGTGACGGCGAACGGCATCGGGGCCGAGGGCGTCAAGGAAGACGACCTCCAGATCGACCCAGCGCTCACGCAGG
TGGACGTGCCGGCCAGGAAGTCGGTCGCGGCGAAGAGGACGGGCTCGGGGAAGCCGCCGTCGCGGAAGAAGACCA
AAAAGGCACCGACGGCCAACATGGGCCCGGGCCCGATGGAGGATGAGGATGACGGCCCGAGCGAAGAGCAGGCAT
CCGGAAGCGACAAGGAGGGCGAAGCGGGAGAGGATGCGGTGGGCCCTCGACAGCAGACGTCGACGCAATCAGAGC
AGCAGCCACCTTCACCTCACAGCGAGGGATCGGACAGCCTCATGGACGACATGGACGACCTGCCGGCTCGGCTGC
CGGCCGTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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