© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5589 |
| Gene name | |
| Location | Contig_280:4473..5460 |
| Strand | - |
| Gene length (bp) | 987 |
| Transcript length (bp) | 987 |
| Coding sequence length (bp) | 987 |
| Protein length (aa) | 329 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2871 | 0.0804 | 0.8026 | 0.141 | 0.1756 | 0.0092 | 0.4764 | 0.4306 | 0.1734 | 0.0138 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999762 |
| Orthofinder run ID | 4 |
| Orthogroup | 6084 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5589 MRLPLLFLAALLGWLCHASCTASCERRVQEVFRFDNNTFIENLVSTTDGRLLLTSLSTNALMVLDPAEPRPTAQT VLTLANVTGLTGITHLGNDVYAVTGGRPASQPFLFERGSMRLFVVSLPLGAVVADMAVEGTAMMNGLASLKPQPH LVLSADSIEGRILRVDTRAQTWDVAFSDDSLKPFNASVFPLGVNGLKYARGHLYYTNSARGTFSRIRVTDRGLRA GPAEPLAALEKPATDRFAYDDFDLDHRGNAYVSLHPSSVRRVSSRGLQSVFAEGGVGNVPPMYEVTATACDAGGS YLYIATGGSEQNPGGQILRASLGETAVD* |
| Coding | >Hirsu2|5589 ATGCGTCTTCCCCTTCTCTTCCTCGCCGCCCTGCTCGGCTGGCTCTGCCATGCCTCCTGTACCGCCTCCTGCGAG AGGCGGGTGCAGGAGGTGTTCCGGTTCGACAACAACACCTTCATCGAGAACCTGGTCTCCACGACTGACGGCCGA CTGCTCCTCACCTCCCTGAGCACCAATGCCCTCATGGTTCTCGATCCGGCCGAGCCGCGGCCCACGGCGCAGACG GTCCTCACCCTCGCCAACGTCACGGGCCTGACGGGCATCACGCACCTCGGCAACGACGTGTACGCCGTCACCGGC GGCCGGCCGGCCTCGCAGCCCTTTCTGTTCGAGCGCGGCAGCATGAGGCTCTTCGTCGTGTCGCTGCCGCTTGGC GCCGTCGTTGCCGACATGGCCGTCGAGGGGACGGCCATGATGAACGGCCTGGCGTCGCTGAAGCCGCAGCCGCAC CTTGTCTTGAGCGCCGACTCGATCGAGGGCCGCATCTTGCGCGTCGACACGCGCGCCCAGACGTGGGACGTGGCC TTTTCCGACGACAGCCTGAAGCCCTTCAACGCGTCCGTCTTCCCGCTCGGCGTCAACGGCCTCAAGTACGCCCGT GGGCATCTCTACTACACCAACTCGGCCCGCGGCACCTTCTCGCGCATCAGAGTCACCGACCGGGGCCTCAGGGCC GGCCCGGCCGAGCCGCTGGCCGCGCTGGAGAAGCCGGCGACGGACAGGTTCGCCTACGACGACTTCGACCTGGAC CACCGGGGCAACGCCTACGTTTCCCTGCATCCGTCCTCCGTCCGCAGAGTCTCCTCCCGCGGCCTGCAGTCGGTC TTCGCCGAGGGCGGCGTTGGCAACGTCCCGCCCATGTACGAGGTCACGGCGACTGCGTGTGATGCCGGCGGTAGC TATCTCTACATCGCCACGGGAGGAAGCGAGCAAAATCCGGGCGGCCAGATCCTCAGGGCCAGCTTGGGCGAGACG GCCGTTGACTAG |
| Transcript | >Hirsu2|5589 ATGCGTCTTCCCCTTCTCTTCCTCGCCGCCCTGCTCGGCTGGCTCTGCCATGCCTCCTGTACCGCCTCCTGCGAG AGGCGGGTGCAGGAGGTGTTCCGGTTCGACAACAACACCTTCATCGAGAACCTGGTCTCCACGACTGACGGCCGA CTGCTCCTCACCTCCCTGAGCACCAATGCCCTCATGGTTCTCGATCCGGCCGAGCCGCGGCCCACGGCGCAGACG GTCCTCACCCTCGCCAACGTCACGGGCCTGACGGGCATCACGCACCTCGGCAACGACGTGTACGCCGTCACCGGC GGCCGGCCGGCCTCGCAGCCCTTTCTGTTCGAGCGCGGCAGCATGAGGCTCTTCGTCGTGTCGCTGCCGCTTGGC GCCGTCGTTGCCGACATGGCCGTCGAGGGGACGGCCATGATGAACGGCCTGGCGTCGCTGAAGCCGCAGCCGCAC CTTGTCTTGAGCGCCGACTCGATCGAGGGCCGCATCTTGCGCGTCGACACGCGCGCCCAGACGTGGGACGTGGCC TTTTCCGACGACAGCCTGAAGCCCTTCAACGCGTCCGTCTTCCCGCTCGGCGTCAACGGCCTCAAGTACGCCCGT GGGCATCTCTACTACACCAACTCGGCCCGCGGCACCTTCTCGCGCATCAGAGTCACCGACCGGGGCCTCAGGGCC GGCCCGGCCGAGCCGCTGGCCGCGCTGGAGAAGCCGGCGACGGACAGGTTCGCCTACGACGACTTCGACCTGGAC CACCGGGGCAACGCCTACGTTTCCCTGCATCCGTCCTCCGTCCGCAGAGTCTCCTCCCGCGGCCTGCAGTCGGTC TTCGCCGAGGGCGGCGTTGGCAACGTCCCGCCCATGTACGAGGTCACGGCGACTGCGTGTGATGCCGGCGGTAGC TATCTCTACATCGCCACGGGAGGAAGCGAGCAAAATCCGGGCGGCCAGATCCTCAGGGCCAGCTTGGGCGAGACG GCCGTTGACTAG |
| Gene | >Hirsu2|5589 ATGCGTCTTCCCCTTCTCTTCCTCGCCGCCCTGCTCGGCTGGCTCTGCCATGCCTCCTGTACCGCCTCCTGCGAG AGGCGGGTGCAGGAGGTGTTCCGGTTCGACAACAACACCTTCATCGAGAACCTGGTCTCCACGACTGACGGCCGA CTGCTCCTCACCTCCCTGAGCACCAATGCCCTCATGGTTCTCGATCCGGCCGAGCCGCGGCCCACGGCGCAGACG GTCCTCACCCTCGCCAACGTCACGGGCCTGACGGGCATCACGCACCTCGGCAACGACGTGTACGCCGTCACCGGC GGCCGGCCGGCCTCGCAGCCCTTTCTGTTCGAGCGCGGCAGCATGAGGCTCTTCGTCGTGTCGCTGCCGCTTGGC GCCGTCGTTGCCGACATGGCCGTCGAGGGGACGGCCATGATGAACGGCCTGGCGTCGCTGAAGCCGCAGCCGCAC CTTGTCTTGAGCGCCGACTCGATCGAGGGCCGCATCTTGCGCGTCGACACGCGCGCCCAGACGTGGGACGTGGCC TTTTCCGACGACAGCCTGAAGCCCTTCAACGCGTCCGTCTTCCCGCTCGGCGTCAACGGCCTCAAGTACGCCCGT GGGCATCTCTACTACACCAACTCGGCCCGCGGCACCTTCTCGCGCATCAGAGTCACCGACCGGGGCCTCAGGGCC GGCCCGGCCGAGCCGCTGGCCGCGCTGGAGAAGCCGGCGACGGACAGGTTCGCCTACGACGACTTCGACCTGGAC CACCGGGGCAACGCCTACGTTTCCCTGCATCCGTCCTCCGTCCGCAGAGTCTCCTCCCGCGGCCTGCAGTCGGTC TTCGCCGAGGGCGGCGTTGGCAACGTCCCGCCCATGTACGAGGTCACGGCGACTGCGTGTGATGCCGGCGGTAGC TATCTCTACATCGCCACGGGAGGAAGCGAGCAAAATCCGGGCGGCCAGATCCTCAGGGCCAGCTTGGGCGAGACG GCCGTTGACTAG |