© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5551 |
| Gene name | |
| Location | Contig_2785:97..840 |
| Strand | + |
| Gene length (bp) | 743 |
| Transcript length (bp) | 666 |
| Coding sequence length (bp) | 666 |
| Protein length (aa) | 222 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 5.6E-12 | 90 | 146 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8N2U9|PQLC1_HUMAN | PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=1 SV=1 | 2 | 169 | 6.0E-15 |
| sp|Q03687|YMP0_YEAST | Uncharacterized membrane protein YMR010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR010W PE=1 SV=1 | 52 | 168 | 9.0E-14 |
| sp|Q5M880|PQLC1_RAT | PQ-loop repeat-containing protein 1 OS=Rattus norvegicus GN=Pqlc1 PE=1 SV=2 | 2 | 169 | 5.0E-13 |
| sp|Q80XM9|PQLC1_MOUSE | PQ-loop repeat-containing protein 1 OS=Mus musculus GN=Pqlc1 PE=1 SV=1 | 2 | 169 | 2.0E-12 |
| sp|Q0VCC1|PQLC1_BOVIN | PQ-loop repeat-containing protein 1 OS=Bos taurus GN=PQLC1 PE=2 SV=1 | 2 | 170 | 1.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8N2U9|PQLC1_HUMAN | PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=1 SV=1 | 2 | 169 | 6.0E-15 |
| sp|Q03687|YMP0_YEAST | Uncharacterized membrane protein YMR010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR010W PE=1 SV=1 | 52 | 168 | 9.0E-14 |
| sp|Q5M880|PQLC1_RAT | PQ-loop repeat-containing protein 1 OS=Rattus norvegicus GN=Pqlc1 PE=1 SV=2 | 2 | 169 | 5.0E-13 |
| sp|Q80XM9|PQLC1_MOUSE | PQ-loop repeat-containing protein 1 OS=Mus musculus GN=Pqlc1 PE=1 SV=1 | 2 | 169 | 2.0E-12 |
| sp|Q0VCC1|PQLC1_BOVIN | PQ-loop repeat-containing protein 1 OS=Bos taurus GN=PQLC1 PE=2 SV=1 | 2 | 170 | 1.0E-11 |
| sp|Q6NRS2|PQLC1_XENLA | PQ-loop repeat-containing protein 1 OS=Xenopus laevis GN=pqlc1 PE=2 SV=1 | 2 | 173 | 2.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 64 | 86 | 22 |
| 2 | 91 | 113 | 22 |
| 3 | 120 | 142 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5551 MQSLIMVGMQVVLLKIALDHRPGPSSKGGEASLPFAGAQQDNVLSAQRPYNFWQWRSPKPYWQFLIYLFGALLVC ELLLSFLPPLYAFYSAMLGYIGLSVEATLAIPQILANSQSRSCKGFRLSVLVAWLGGDAMKIFWFFTATTDIPVA FKVCGLFQAACDCFLGAQYLQYGDGDVDEVVKEHPLEEGQWSSAFMNGPRPHSRSFSQMKGSTLYSDSEAD* |
| Coding | >Hirsu2|5551 ATGCAGTCGCTCATCATGGTTGGCATGCAGGTTGTCCTGCTCAAGATTGCGCTCGACCACCGGCCGGGGCCCTCG TCCAAGGGCGGCGAGGCCAGTCTGCCCTTTGCCGGCGCGCAGCAGGACAACGTCCTGTCCGCGCAGCGGCCGTAC AACTTCTGGCAGTGGCGGTCCCCCAAGCCATACTGGCAGTTCCTCATCTACCTCTTCGGGGCCCTGCTCGTCTGC GAGCTGCTGCTCTCCTTCCTGCCGCCGCTCTACGCCTTCTACTCGGCCATGCTCGGCTACATTGGGCTTTCGGTT GAGGCCACGCTGGCCATACCGCAGATCCTGGCCAACTCGCAGTCGAGGTCGTGCAAGGGCTTCCGGCTGTCGGTG CTGGTGGCCTGGCTGGGCGGCGACGCCATGAAGATCTTCTGGTTCTTCACCGCCACGACCGACATACCCGTGGCC TTCAAGGTGTGCGGCCTGTTCCAGGCGGCGTGCGACTGCTTCCTGGGCGCGCAGTACCTCCAGTACGGCGACGGC GACGTCGACGAGGTCGTCAAGGAGCACCCGCTGGAGGAGGGCCAGTGGTCGAGCGCCTTCATGAACGGGCCGCGC CCGCACAGCAGGAGCTTCTCGCAGATGAAGGGCTCGACGCTCTACAGCGACTCCGAGGCCGACTAG |
| Transcript | >Hirsu2|5551 ATGCAGTCGCTCATCATGGTTGGCATGCAGGTTGTCCTGCTCAAGATTGCGCTCGACCACCGGCCGGGGCCCTCG TCCAAGGGCGGCGAGGCCAGTCTGCCCTTTGCCGGCGCGCAGCAGGACAACGTCCTGTCCGCGCAGCGGCCGTAC AACTTCTGGCAGTGGCGGTCCCCCAAGCCATACTGGCAGTTCCTCATCTACCTCTTCGGGGCCCTGCTCGTCTGC GAGCTGCTGCTCTCCTTCCTGCCGCCGCTCTACGCCTTCTACTCGGCCATGCTCGGCTACATTGGGCTTTCGGTT GAGGCCACGCTGGCCATACCGCAGATCCTGGCCAACTCGCAGTCGAGGTCGTGCAAGGGCTTCCGGCTGTCGGTG CTGGTGGCCTGGCTGGGCGGCGACGCCATGAAGATCTTCTGGTTCTTCACCGCCACGACCGACATACCCGTGGCC TTCAAGGTGTGCGGCCTGTTCCAGGCGGCGTGCGACTGCTTCCTGGGCGCGCAGTACCTCCAGTACGGCGACGGC GACGTCGACGAGGTCGTCAAGGAGCACCCGCTGGAGGAGGGCCAGTGGTCGAGCGCCTTCATGAACGGGCCGCGC CCGCACAGCAGGAGCTTCTCGCAGATGAAGGGCTCGACGCTCTACAGCGACTCCGAGGCCGACTAG |
| Gene | >Hirsu2|5551 ATGCAGTCGCTCATCATGGTTGGCATGCAGGTTGTCCTGCTCAAGATTGCGCTCGACCACCGGCCGGGGCCCTCG TCCAAGGGCGGCGAGGCCAGTCTGCCCTTTGCCGGCGCGCAGCAGGACAACGTCCTGTCCGCGCAGCGGCCGTAC AACTTCTGGCAGTGGCGGTCCCCCAAGCCGTACGTTTTTATCACCGCACCCCTCGTCTTGTTCGTCTCGCACCCG AGCGCAGTCTCTGACGTCATGTTGTCCATAGATACTGGCAGTTCCTCATCTACCTCTTCGGGGCCCTGCTCGTCT GCGAGCTGCTGCTCTCCTTCCTGCCGCCGCTCTACGCCTTCTACTCGGCCATGCTCGGCTACATTGGGCTTTCGG TTGAGGCCACGCTGGCCATACCGCAGATCCTGGCCAACTCGCAGTCGAGGTCGTGCAAGGGCTTCCGGCTGTCGG TGCTGGTGGCCTGGCTGGGCGGCGACGCCATGAAGATCTTCTGGTTCTTCACCGCCACGACCGACATACCCGTGG CCTTCAAGGTGTGCGGCCTGTTCCAGGCGGCGTGCGACTGCTTCCTGGGCGCGCAGTACCTCCAGTACGGCGACG GCGACGTCGACGAGGTCGTCAAGGAGCACCCGCTGGAGGAGGGCCAGTGGTCGAGCGCCTTCATGAACGGGCCGC GCCCGCACAGCAGGAGCTTCTCGCAGATGAAGGGCTCGACGCTCTACAGCGACTCCGAGGCCGACTAG |