Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5536
Gene name
LocationContig_2778:319..1653
Strand+
Gene length (bp)1334
Transcript length (bp)1149
Coding sequence length (bp)1149
Protein length (aa) 383

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF18261 Rpn9_C Rpn9 C-terminal helix 4.6E-17 344 376
PF01399 PCI PCI domain 5.7E-07 237 335

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9US13|RPN9_SCHPO Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn9 PE=3 SV=1 1 381 2.0E-104
sp|Q04062|RPN9_YEAST 26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN9 PE=1 SV=1 6 381 5.0E-85
sp|P84169|PSD13_CHICK 26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1 6 379 1.0E-73
sp|B0BN93|PSD13_RAT 26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1 6 379 3.0E-72
sp|Q9UNM6|PSD13_HUMAN 26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=2 6 379 8.0E-72
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Swissprot ID Swissprot Description Start End E-value
sp|Q9US13|RPN9_SCHPO Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn9 PE=3 SV=1 1 381 2.0E-104
sp|Q04062|RPN9_YEAST 26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN9 PE=1 SV=1 6 381 5.0E-85
sp|P84169|PSD13_CHICK 26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1 6 379 1.0E-73
sp|B0BN93|PSD13_RAT 26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1 6 379 3.0E-72
sp|Q9UNM6|PSD13_HUMAN 26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=2 6 379 8.0E-72
sp|Q9WVJ2|PSD13_MOUSE 26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1 6 379 7.0E-71
sp|Q5E964|PSD13_BOVIN 26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1 6 379 1.0E-70
sp|Q54NQ0|PSD13_DICDI 26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1 8 361 5.0E-66
sp|Q8GYA6|PS13B_ARATH 26S proteasome non-ATPase regulatory subunit 13 homolog B OS=Arabidopsis thaliana GN=RPN9B PE=1 SV=1 9 382 1.0E-61
sp|Q8RWF0|PS13A_ARATH 26S proteasome non-ATPase regulatory subunit 13 homolog A OS=Arabidopsis thaliana GN=RPN9A PE=1 SV=1 9 382 5.0E-61
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.7687 0.5453 0.0653 0.0433 0.1287 0.0472 0.0315 0.4088 0.1874 0.0087

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5391
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1306
Ophiocordyceps australis map64 (Brazil) OphauB2|5146
Ophiocordyceps camponoti-floridani Ophcf2|01801
Ophiocordyceps camponoti-rufipedis Ophun1|3264
Ophiocordyceps kimflemingae Ophio5|7914
Ophiocordyceps subramaniannii Hirsu2|5536 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5536
MNVDLIPDFLAELRDQAPEQLQPQFLDFENFWERKLWHQLTDALVQYFNHHDSGPQRLPLYKVFILKFADKINQL
KLVDLALKTATQCKDDQERLTFLQSVVKKVDNENSQDALVFASVAVARVRLNLNELDDARRDLDSAERILDTFDS
VETVVHAAFYDANANYYQRKMDFANYYRTALLYLACIDLTSLTAEERHRRAYYLSVAALVSNSIYNFGELLLHPI
LDALAQSKEDAWLRDLLFAYNRGDLTAYDVLSDNISSNKLLNEHAIHLQQKLYLAALTEAVFRRPPHDRTMTFAF
ISQETKVHIGEIEHLIMKALSLGLLRGTIDQVDEIARISWVQPKVLDMKQISNMRHRLLDWDSNVNQLGNWIEAA
GKDVWAA*
Coding >Hirsu2|5536
ATGAATGTCGACTTGATTCCCGACTTCCTGGCTGAGCTGCGGGACCAAGCCCCGGAACAGCTTCAACCTCAGTTT
CTCGACTTTGAAAACTTCTGGGAGCGAAAGCTTTGGCATCAACTAACAGATGCCTTAGTTCAGTATTTCAACCAT
CATGACAGTGGTCCCCAACGCCTTCCCCTCTATAAGGTCTTTATACTGAAGTTTGCCGATAAAATTAATCAGTTG
AAACTAGTCGACTTGGCGCTCAAGACCGCAACTCAGTGTAAAGACGATCAAGAGCGCCTTACATTTTTGCAGTCG
GTTGTGAAGAAGGTCGACAACGAAAACTCGCAAGACGCTCTTGTTTTCGCTTCGGTAGCTGTTGCGCGGGTGAGG
CTTAACCTGAATGAGCTAGATGACGCAAGAAGAGATCTAGACTCAGCCGAGCGCATACTGGATACGTTCGATTCC
GTCGAGACGGTTGTTCATGCGGCATTTTACGATGCAAATGCAAACTACTATCAACGCAAGATGGATTTCGCCAAC
TATTACCGAACTGCTCTGCTCTATCTTGCCTGCATAGATCTCACATCCCTGACCGCCGAAGAGCGGCACCGAAGA
GCCTACTATCTCAGTGTGGCTGCTTTGGTGTCCAACAGCATCTATAACTTTGGGGAGTTGCTCTTGCATCCTATT
TTAGATGCTCTCGCTCAGAGCAAAGAGGATGCGTGGCTCCGGGACCTTCTCTTCGCCTACAACCGTGGCGACCTG
ACCGCCTACGACGTGCTCTCCGACAACATATCCTCCAATAAGCTACTTAACGAGCATGCGATTCACCTTCAACAA
AAACTTTACCTCGCAGCTCTAACAGAGGCTGTATTCCGCCGACCGCCACATGACCGCACCATGACATTTGCGTTC
ATTTCACAGGAGACAAAGGTCCATATAGGGGAGATCGAGCATCTTATTATGAAGGCACTGAGCTTGGGCCTTCTG
CGCGGGACAATAGATCAGGTGGATGAAATTGCTCGGATTAGTTGGGTGCAGCCTAAGGTACTGGACATGAAGCAG
ATTAGCAACATGCGACACCGCCTGCTGGATTGGGACTCCAATGTTAACCAGCTGGGAAACTGGATTGAGGCTGCT
GGTAAGGATGTATGGGCCGCATAG
Transcript >Hirsu2|5536
ATGAATGTCGACTTGATTCCCGACTTCCTGGCTGAGCTGCGGGACCAAGCCCCGGAACAGCTTCAACCTCAGTTT
CTCGACTTTGAAAACTTCTGGGAGCGAAAGCTTTGGCATCAACTAACAGATGCCTTAGTTCAGTATTTCAACCAT
CATGACAGTGGTCCCCAACGCCTTCCCCTCTATAAGGTCTTTATACTGAAGTTTGCCGATAAAATTAATCAGTTG
AAACTAGTCGACTTGGCGCTCAAGACCGCAACTCAGTGTAAAGACGATCAAGAGCGCCTTACATTTTTGCAGTCG
GTTGTGAAGAAGGTCGACAACGAAAACTCGCAAGACGCTCTTGTTTTCGCTTCGGTAGCTGTTGCGCGGGTGAGG
CTTAACCTGAATGAGCTAGATGACGCAAGAAGAGATCTAGACTCAGCCGAGCGCATACTGGATACGTTCGATTCC
GTCGAGACGGTTGTTCATGCGGCATTTTACGATGCAAATGCAAACTACTATCAACGCAAGATGGATTTCGCCAAC
TATTACCGAACTGCTCTGCTCTATCTTGCCTGCATAGATCTCACATCCCTGACCGCCGAAGAGCGGCACCGAAGA
GCCTACTATCTCAGTGTGGCTGCTTTGGTGTCCAACAGCATCTATAACTTTGGGGAGTTGCTCTTGCATCCTATT
TTAGATGCTCTCGCTCAGAGCAAAGAGGATGCGTGGCTCCGGGACCTTCTCTTCGCCTACAACCGTGGCGACCTG
ACCGCCTACGACGTGCTCTCCGACAACATATCCTCCAATAAGCTACTTAACGAGCATGCGATTCACCTTCAACAA
AAACTTTACCTCGCAGCTCTAACAGAGGCTGTATTCCGCCGACCGCCACATGACCGCACCATGACATTTGCGTTC
ATTTCACAGGAGACAAAGGTCCATATAGGGGAGATCGAGCATCTTATTATGAAGGCACTGAGCTTGGGCCTTCTG
CGCGGGACAATAGATCAGGTGGATGAAATTGCTCGGATTAGTTGGGTGCAGCCTAAGGTACTGGACATGAAGCAG
ATTAGCAACATGCGACACCGCCTGCTGGATTGGGACTCCAATGTTAACCAGCTGGGAAACTGGATTGAGGCTGCT
GGTAAGGATGTATGGGCCGCATAG
Gene >Hirsu2|5536
ATGAATGTCGACTTGATTCCCGACTTCCTGGCTGAGCTGCGGGACCAAGCCCCGGAACAGCTTCAACCTCAGTTT
CTCGACTTTGAAAACTTCTGGGAGCGAAAGCTTTGGCATCAACTAACAGATGCCTTAGTTCAGTATTTCAACCAT
CATGACAGTGGTCCCCAACGCCTTCCCCTCTATAAGGTCTTTATACTGAAGTTTGCCGATAAAATTAATCAGTTG
AAACTAGTCGACTTGGCGCTCAAGACCGCAACTCAGTGTAAAGGTGCGGTTACGCTGATGCCATCCTTGCGGTCT
CGGTGGTGCTGACTAGCCTTAAGACGATCAAGAGCGCCTTACATTTTTGCAGTCGGTTGTGAAGAAGGTCGACAA
CGAAAACTCGCAAGACGCTCTTGTTTTCGCTTCGGTAGCTGTTGCGCGGGTGAGGCTTAACCTGAATGAGCTAGA
TGACGCAAGAAGAGATCTAGACTCAGCCGAGCGCATACTGGATACGTTCGATTCCGTCGAGACGGTTGTTCATGC
GGCATTTTACGATGCAAATGCAAACTACTATCAAGTGCGTTGCATCATCTCACTCTACCATCATCACTGCACCTA
CTACTATTCTTTCGGGGTTCATAGATCGGGATGACTGGTATTTGCTCTAGCGAATTCGAGTCGAGGTCGGGCTGA
CTTGTTTCACACAGCGCAAGATGGATTTCGCCAACTATTACCGAACTGCTCTGCTCTATCTTGCCTGCATAGATC
TCACATCCCTGACCGCCGAAGAGCGGCACCGAAGAGCCTACTATCTCAGTGTGGCTGCTTTGGTGTCCAACAGCA
TCTATAACTTTGGGGAGTTGCTCTTGCATCCTATTTTAGATGCTCTCGCTCAGAGCAAAGAGGATGCGTGGCTCC
GGGACCTTCTCTTCGCCTACAACCGTGGCGACCTGACCGCCTACGACGTGCTCTCCGACAACATATCCTCCAATA
AGCTACTTAACGAGCATGCGATTCACCTTCAACAAAAACTTTACCTCGCAGCTCTAACAGAGGCTGTATTCCGCC
GACCGCCACATGACCGCACCATGACATTTGCGTTCATTTCACAGGAGACAAAGGTCCATATAGGGGAGATCGAGC
ATCTTATTATGAAGGCACTGAGCTTGGGCCTTCTGCGCGGGACAATAGATCAGGTGGATGAAATTGCTCGGATTA
GTTGGGTGCAGCCTAAGGTACTGGACATGAAGCAGATTAGCAACATGCGACACCGCCTGCTGGATTGGGACTCCA
ATGTTAACCAGCTGGGAAACTGGATTGAGGCTGCTGGTAAGGATGTATGGGCCGCATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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