Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|55
Gene name
LocationContig_1005:447..1258
Strand-
Gene length (bp)811
Transcript length (bp)732
Coding sequence length (bp)732
Protein length (aa) 244

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02466 Tim17 Tim17/Tim22/Tim23/Pmp24 family 7.2E-25 110 217

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9USM7|TIM23_SCHPO Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1 48 230 2.0E-61
sp|P32897|TIM23_YEAST Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM23 PE=1 SV=1 64 231 3.0E-52
sp|Q9LNQ1|TI231_ARATH Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1 97 207 2.0E-11
sp|Q7T2P6|TIM23_DANRE Mitochondrial import inner membrane translocase subunit Tim23 OS=Danio rerio GN=timm23 PE=2 SV=1 75 225 1.0E-09
sp|O35093|TIM23_RAT Mitochondrial import inner membrane translocase subunit Tim23 OS=Rattus norvegicus GN=Timm23 PE=2 SV=1 71 225 1.0E-09
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9USM7|TIM23_SCHPO Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=3 SV=1 48 230 2.0E-61
sp|P32897|TIM23_YEAST Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM23 PE=1 SV=1 64 231 3.0E-52
sp|Q9LNQ1|TI231_ARATH Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1 97 207 2.0E-11
sp|Q7T2P6|TIM23_DANRE Mitochondrial import inner membrane translocase subunit Tim23 OS=Danio rerio GN=timm23 PE=2 SV=1 75 225 1.0E-09
sp|O35093|TIM23_RAT Mitochondrial import inner membrane translocase subunit Tim23 OS=Rattus norvegicus GN=Timm23 PE=2 SV=1 71 225 1.0E-09
sp|Q38820|TI232_ARATH Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana GN=TIM23-2 PE=1 SV=1 59 207 5.0E-09
sp|Q6INU6|TIM23_XENLA Mitochondrial import inner membrane translocase subunit Tim23 OS=Xenopus laevis GN=timm23 PE=2 SV=1 75 225 1.0E-08
sp|Q5RDD0|TIM23_PONAB Mitochondrial import inner membrane translocase subunit Tim23 OS=Pongo abelii GN=TIMM23 PE=2 SV=1 71 225 6.0E-08
sp|Q9WTQ8|TIM23_MOUSE Mitochondrial import inner membrane translocase subunit Tim23 OS=Mus musculus GN=Timm23 PE=1 SV=1 71 225 7.0E-08
sp|O14925|TIM23_HUMAN Mitochondrial import inner membrane translocase subunit Tim23 OS=Homo sapiens GN=TIMM23 PE=1 SV=1 71 225 8.0E-08
sp|Q5XH94|TIM23_XENTR Mitochondrial import inner membrane translocase subunit Tim23 OS=Xenopus tropicalis GN=timm23 PE=2 SV=1 75 217 2.0E-07
sp|Q5SRD1|TI23B_HUMAN Putative mitochondrial import inner membrane translocase subunit Tim23B OS=Homo sapiens GN=TIMM23B PE=5 SV=2 71 203 2.0E-06
sp|A4IFL0|TIM23_BOVIN Mitochondrial import inner membrane translocase subunit Tim23 OS=Bos taurus GN=TIMM23 PE=2 SV=1 71 203 2.0E-06
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.1242 0.2789 0.0101 0.0272 0.8372 0.4839 0.1565 0.1496 0.1033 0.0371

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup184
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3806
Ophiocordyceps australis 1348a (Ghana) OphauG2|3807
Ophiocordyceps australis map64 (Brazil) OphauB2|6784
Ophiocordyceps australis map64 (Brazil) OphauB2|6785
Ophiocordyceps camponoti-floridani Ophcf2|03634
Ophiocordyceps camponoti-floridani Ophcf2|03635
Ophiocordyceps camponoti-floridani Ophcf2|03636
Ophiocordyceps camponoti-rufipedis Ophun1|2598
Ophiocordyceps kimflemingae Ophio5|109
Ophiocordyceps kimflemingae Ophio5|110
Ophiocordyceps subramaniannii Hirsu2|4254
Ophiocordyceps subramaniannii Hirsu2|55 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|55
MSSLWNALTGGSSKSSSSSAQTSQQQAQHQQQLPAAAHSAPSYTSFDPSEGQGVEAFLQNSSFADPSQLHPLAGL
NRDALEYLTLDESALSDLPGGQSVLPSRGFTDDLCYGTGITYLAALSIGGAWGLQEGLRRSHGQPPKLRLNSVLN
AVTRRGPFLGNSAGVVAITYNCVNSLIGYARGKHDAGNSVLAGLLSGVIFKSTRGVRPMMISGGIVGSMAAVWAI
TRRAFFPVPEPVAPMEAL*
Coding >Hirsu2|55
ATGTCGTCGCTCTGGAACGCCCTCACGGGGGGCAGCAGCAAGTCTTCGTCCTCGTCGGCGCAGACGTCACAGCAG
CAAGCACAGCACCAGCAGCAGCTGCCGGCGGCGGCGCACAGCGCGCCGTCGTACACGTCGTTCGACCCGTCCGAG
GGCCAGGGCGTCGAGGCCTTCCTGCAGAACTCGTCGTTCGCGGACCCGTCGCAGCTGCACCCGCTGGCGGGCCTC
AACCGCGACGCGCTCGAGTACCTGACGCTGGACGAGTCGGCGCTGTCGGACCTTCCGGGCGGGCAGTCGGTGCTG
CCGTCGCGCGGCTTCACCGACGACCTGTGCTACGGCACGGGCATCACCTACCTGGCGGCGCTGTCGATCGGGGGC
GCGTGGGGCCTGCAGGAGGGCCTGCGGCGGTCGCACGGGCAGCCGCCCAAGCTGCGGCTCAACTCGGTCCTCAAC
GCCGTCACGCGGCGCGGGCCCTTCCTCGGCAACTCGGCCGGCGTCGTCGCCATCACGTACAACTGCGTCAACTCG
CTCATCGGCTACGCGCGCGGCAAGCACGACGCCGGCAACAGCGTCCTGGCCGGCCTGCTGAGCGGCGTCATCTTC
AAGAGCACGAGGGGCGTGCGGCCCATGATGATCTCGGGCGGCATCGTCGGCTCCATGGCCGCCGTCTGGGCGATC
ACTCGCCGTGCCTTCTTCCCCGTGCCGGAGCCGGTAGCCCCGATGGAGGCTCTATAA
Transcript >Hirsu2|55
ATGTCGTCGCTCTGGAACGCCCTCACGGGGGGCAGCAGCAAGTCTTCGTCCTCGTCGGCGCAGACGTCACAGCAG
CAAGCACAGCACCAGCAGCAGCTGCCGGCGGCGGCGCACAGCGCGCCGTCGTACACGTCGTTCGACCCGTCCGAG
GGCCAGGGCGTCGAGGCCTTCCTGCAGAACTCGTCGTTCGCGGACCCGTCGCAGCTGCACCCGCTGGCGGGCCTC
AACCGCGACGCGCTCGAGTACCTGACGCTGGACGAGTCGGCGCTGTCGGACCTTCCGGGCGGGCAGTCGGTGCTG
CCGTCGCGCGGCTTCACCGACGACCTGTGCTACGGCACGGGCATCACCTACCTGGCGGCGCTGTCGATCGGGGGC
GCGTGGGGCCTGCAGGAGGGCCTGCGGCGGTCGCACGGGCAGCCGCCCAAGCTGCGGCTCAACTCGGTCCTCAAC
GCCGTCACGCGGCGCGGGCCCTTCCTCGGCAACTCGGCCGGCGTCGTCGCCATCACGTACAACTGCGTCAACTCG
CTCATCGGCTACGCGCGCGGCAAGCACGACGCCGGCAACAGCGTCCTGGCCGGCCTGCTGAGCGGCGTCATCTTC
AAGAGCACGAGGGGCGTGCGGCCCATGATGATCTCGGGCGGCATCGTCGGCTCCATGGCCGCCGTCTGGGCGATC
ACTCGCCGTGCCTTCTTCCCCGTGCCGGAGCCGGTAGCCCCGATGGAGGCTCTATAA
Gene >Hirsu2|55
ATGTCGTCGCTCTGGAACGCCCTCACGGGGGGCAGCAGCAAGTCTTCGTCCTCGTCGGCGCAGACGTCACAGCAG
CAAGCACAGCACCAGCAGCAGCTGCCGGCGGCGGCGCACAGCGCGCCGTCGTACACGTCGTTCGACCCGTCCGAG
GGCCAGGGCGTCGAGGCCTTCCTGCAGAACTCGTCGTTCGCGGACCCGTCGCAGCTGCACCCGCTGGCGGGCCTC
AACCGCGACGCGCTCGAGTACCTGACGCTGGACGAGTCGGCGCTGTCGGACCTTCCGGGCGGGCAGTCGGTGCTG
CCGTCGCGCGGCTTCACCGACGACCTGTGCTACGGCACGGGCATCACCTACCTGGCGGCGCTGTCGATCGGGGGC
GCGTGGGGCCTGCAGGAGGGCCTGCGGCGGTCGCACGGGCAGCCGCCCAAGCTGCGGCTCAACTCGGTCCTCAAC
GCCGTCACGCGGCGCGGGCCCTTCCTCGGCAACTCGGCCGGCGTCGTCGCCATCACGTACAACTGCGTCAACTCG
CTCATCGGCTACGCGCGCGGCAAGCACGACGCCGGCAACAGCGTCCTGGCCGGCCTGCTGAGCGGCGTCATCTTC
AAGAGCACGAGGGGCGTGCGGCCCATGATGATCTCGGGCGGCATCGTCGGCTCCATGGCCGCCGTCTGGGCGGTA
AGTCTGCGTGGTCAAAAAAAAAAAAAAAGATAAAATGGCGTAAATGCTGACTGACGATGACGCGACGCCGACACA
GATCACTCGCCGTGCCTTCTTCCCCGTGCCGGAGCCGGTAGCCCCGATGGAGGCTCTATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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