© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5493 |
| Gene name | |
| Location | Contig_275:17435..18691 |
| Strand | + |
| Gene length (bp) | 1256 |
| Transcript length (bp) | 1143 |
| Coding sequence length (bp) | 1143 |
| Protein length (aa) | 381 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06775 | Seipin | Putative adipose-regulatory protein (Seipin) | 4.9E-57 | 32 | 246 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14119|BSCLH_SCHPO | Seipin homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.04 PE=3 SV=4 | 25 | 248 | 7.0E-09 |
| sp|Q9V3X4|BSCL2_DROME | Seipin OS=Drosophila melanogaster GN=Seipin PE=2 SV=1 | 16 | 261 | 8.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019915 | lipid storage | Yes |
| GO:0051235 | maintenance of location | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 242 | 264 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5493 MDALEETVRVATSKPVQRAAVNTALLVSGAATLFCLAAIATGLFFQNFVPDHLVKIPVHLQYGSGPNPYGVSSLK SPPMIKSQQAYDISVVLSIPRSPANVARGNFMVSLHLLGAEASAKLEADARAFSHMHDSFGSHPVIFSSRRSALV PYIDPMVSVAKRLILLLFHIIIPSSQTCTLKIDLAERLAFPKDSLLPASAYIEVEAGQEIQIYSAALTMTAQLSG LRWLMFYYRLPTYLAFTFVFWLCELLFMSLAWAAWAAVVTTDSAPSRKGRDAFDDKHIDDDKNQDDSSDYPHNFP TYGRQRPLKHEPGVKEEDNEEGKEYIYDIPVAGAEADDEDEPDVDEGSSGRRRHDSGLGTSYSEKGSGSMRRRTS RDTPE* |
| Coding | >Hirsu2|5493 ATGGACGCCCTCGAGGAGACTGTTCGTGTCGCGACGTCGAAGCCTGTGCAGAGGGCGGCCGTCAATACGGCGCTT CTGGTGTCCGGCGCAGCAACACTCTTCTGCCTGGCTGCTATTGCAACGGGTCTATTCTTCCAGAACTTCGTCCCG GATCACCTCGTCAAGATACCCGTACACCTTCAATATGGATCGGGTCCCAACCCGTACGGAGTGTCGTCCCTAAAG AGCCCCCCCATGATCAAGTCTCAGCAAGCATACGATATTTCCGTCGTTCTCTCGATCCCACGGTCCCCGGCCAAT GTTGCGCGTGGAAATTTCATGGTCTCCTTGCACCTGCTCGGGGCCGAGGCCAGCGCGAAGCTCGAGGCTGACGCG CGCGCTTTCTCTCACATGCACGATAGTTTCGGAAGTCATCCAGTCATCTTCAGCTCACGTCGCTCGGCGCTTGTG CCTTATATCGACCCAATGGTGTCCGTGGCCAAGCGACTGATCTTGTTGTTATTTCACATCATCATCCCCAGTTCC CAGACCTGCACCTTGAAGATTGACTTGGCCGAGCGCCTGGCCTTCCCCAAGGACTCTCTGCTTCCTGCCTCGGCG TACATCGAAGTGGAGGCCGGGCAGGAAATACAGATCTATAGTGCGGCTCTGACCATGACCGCACAACTGAGCGGG CTGCGGTGGCTCATGTTCTACTATCGGCTGCCCACGTACCTTGCTTTTACCTTTGTGTTCTGGCTCTGCGAATTA CTGTTCATGAGCCTTGCCTGGGCCGCCTGGGCTGCCGTTGTGACCACAGACAGTGCTCCTAGCAGGAAAGGCCGC GATGCCTTCGACGACAAACATATCGATGACGACAAAAATCAGGACGACTCCTCGGACTATCCCCACAACTTCCCT ACGTATGGGAGGCAGCGGCCGCTCAAGCACGAGCCAGGGGTCAAGGAGGAAGACAATGAGGAAGGGAAGGAGTAC ATCTATGATATCCCCGTCGCCGGAGCTGAAGCAGATGACGAAGATGAGCCGGATGTGGATGAGGGTAGCAGTGGC AGGCGGAGACATGATTCTGGTCTGGGTACGAGCTACAGCGAGAAAGGAAGCGGTAGTATGCGCAGAAGGACATCT CGCGATACGCCCGAGTAG |
| Transcript | >Hirsu2|5493 ATGGACGCCCTCGAGGAGACTGTTCGTGTCGCGACGTCGAAGCCTGTGCAGAGGGCGGCCGTCAATACGGCGCTT CTGGTGTCCGGCGCAGCAACACTCTTCTGCCTGGCTGCTATTGCAACGGGTCTATTCTTCCAGAACTTCGTCCCG GATCACCTCGTCAAGATACCCGTACACCTTCAATATGGATCGGGTCCCAACCCGTACGGAGTGTCGTCCCTAAAG AGCCCCCCCATGATCAAGTCTCAGCAAGCATACGATATTTCCGTCGTTCTCTCGATCCCACGGTCCCCGGCCAAT GTTGCGCGTGGAAATTTCATGGTCTCCTTGCACCTGCTCGGGGCCGAGGCCAGCGCGAAGCTCGAGGCTGACGCG CGCGCTTTCTCTCACATGCACGATAGTTTCGGAAGTCATCCAGTCATCTTCAGCTCACGTCGCTCGGCGCTTGTG CCTTATATCGACCCAATGGTGTCCGTGGCCAAGCGACTGATCTTGTTGTTATTTCACATCATCATCCCCAGTTCC CAGACCTGCACCTTGAAGATTGACTTGGCCGAGCGCCTGGCCTTCCCCAAGGACTCTCTGCTTCCTGCCTCGGCG TACATCGAAGTGGAGGCCGGGCAGGAAATACAGATCTATAGTGCGGCTCTGACCATGACCGCACAACTGAGCGGG CTGCGGTGGCTCATGTTCTACTATCGGCTGCCCACGTACCTTGCTTTTACCTTTGTGTTCTGGCTCTGCGAATTA CTGTTCATGAGCCTTGCCTGGGCCGCCTGGGCTGCCGTTGTGACCACAGACAGTGCTCCTAGCAGGAAAGGCCGC GATGCCTTCGACGACAAACATATCGATGACGACAAAAATCAGGACGACTCCTCGGACTATCCCCACAACTTCCCT ACGTATGGGAGGCAGCGGCCGCTCAAGCACGAGCCAGGGGTCAAGGAGGAAGACAATGAGGAAGGGAAGGAGTAC ATCTATGATATCCCCGTCGCCGGAGCTGAAGCAGATGACGAAGATGAGCCGGATGTGGATGAGGGTAGCAGTGGC AGGCGGAGACATGATTCTGGTCTGGGTACGAGCTACAGCGAGAAAGGAAGCGGTAGTATGCGCAGAAGGACATCT CGCGATACGCCCGAGTAG |
| Gene | >Hirsu2|5493 ATGGTGAGGCTCCTTGTTGCCGGCCACACACGACTGTTTCTGATACTTGCCGTCGGCAGGACGCCCTCGAGGAGA CTGTTCGTGTCGCGACGTCGAAGCCTGTGCAGAGGGCGGCCGTCAATACGGCGCTTCTGGTGTCCGGCGCAGCAA CACTCTTCTGCCTGGCTGCTATTGCAACGGGTCTATTCTTCCAGAACTTCGTCCCGGATCACCTCGTCAAGATAC CCGTACACCTTCAATATGGGTACGCCGACGTCGACCACTTTCCTCTACCGCACGCTGCTGACATGCCATCACTCA GATCGGGTCCCAACCCGTACGGAGTGTCGTCCCTAAAGAGCCCCCCCATGATCAAGTCTCAGCAAGCATACGATA TTTCCGTCGTTCTCTCGATCCCACGGTCCCCGGCCAATGTTGCGCGTGGAAATTTCATGGTCTCCTTGCACCTGC TCGGGGCCGAGGCCAGCGCGAAGCTCGAGGCTGACGCGCGCGCTTTCTCTCACATGCACGATAGTTTCGGAAGTC ATCCAGTCATCTTCAGCTCACGTCGCTCGGCGCTTGTGCCTTATATCGACCCAATGGTGTCCGTGGCCAAGCGAC TGATCTTGTTGTTATTTCACATCATCATCCCCAGTTCCCAGACCTGCACCTTGAAGATTGACTTGGCCGAGCGCC TGGCCTTCCCCAAGGACTCTCTGCTTCCTGCCTCGGCGTACATCGAAGTGGAGGCCGGGCAGGAAATACAGATCT ATAGTGCGGCTCTGACCATGACCGCACAACTGAGCGGGCTGCGGTGGCTCATGTTCTACTATCGGCTGCCCACGT ACCTTGCTTTTACCTTTGTGTTCTGGCTCTGCGAATTACTGTTCATGAGCCTTGCCTGGGCCGCCTGGGCTGCCG TTGTGACCACAGACAGTGCTCCTAGCAGGAAAGGCCGCGATGCCTTCGACGACAAACATATCGATGACGACAAAA ATCAGGACGACTCCTCGGACTATCCCCACAACTTCCCTACGTATGGGAGGCAGCGGCCGCTCAAGCACGAGCCAG GGGTCAAGGAGGAAGACAATGAGGAAGGGAAGGAGTACATCTATGATATCCCCGTCGCCGGAGCTGAAGCAGATG ACGAAGATGAGCCGGATGTGGATGAGGGTAGCAGTGGCAGGCGGAGACATGATTCTGGTCTGGGTACGAGCTACA GCGAGAAAGGAAGCGGTAGTATGCGCAGAAGGACATCTCGCGATACGCCCGAGTAG |